Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 155-401 |
| Cow position: | chr8:2168936-2168689 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 55, 180 |
| Conread position: | 166-405 |
| Cow position: | chr8:34109471-34109715 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 168-380 |
| Cow position: | chr8:42578986-42578780 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 170-394 |
| Cow position: | chr8:42747194-42746969 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 31, 165 |
| Conread position: | 170-394 |
| Cow position: | chr8:51666214-51665992 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 209, 17 |
| Conread position: | 170-394 |
| Cow position: | chr8:51857569-51857792 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 114 |
| Conread position: | 170-401 |
| Cow position: | chr8:25523998-25524223 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 17, 49 |
| Conread position: | 170-401 |
| Cow position: | chr8:47887450-47887675 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 211, 19 |
| Conread position: | 170-402 |
| Cow position: | chr8:45691410-45691191 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 170-405 |
| Cow position: | chr8:6726385-6726151 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 170-405 |
| Cow position: | chr8:9639475-9639711 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 178 |
| Conread position: | 170-405 |
| Cow position: | chr8:9963908-9963684 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 31, 36 |
| Conread position: | 170-405 |
| Cow position: | chr8:31252094-31252324 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 170-405 |
| Cow position: | chr8:38584519-38584282 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 170-405 |
| Cow position: | chr8:50960010-50959778 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 171-335 |
| Cow position: | chr8:25775060-25774895 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 171-393 |
| Cow position: | chr8:39591652-39591432 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 171-394 |
| Cow position: | chr8:28878615-28878834 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 171-405 |
| Cow position: | chr8:44939-44707 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 88 |
| Conread position: | 171-405 |
| Cow position: | chr8:2235374-2235150 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 210, 87 |
| Conread position: | 171-405 |
| Cow position: | chr8:23135009-23134766 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 31, 54 |
| Conread position: | 171-405 |
| Cow position: | chr8:24871183-24870957 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 112 |
| Conread position: | 171-405 |
| Cow position: | chr8:56884132-56884362 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 200, 39 |
| Conread position: | 172-333 |
| Cow position: | chr8:20135843-20135681 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 172-376 |
| Cow position: | chr8:59261338-59261139 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 102 |
| Conread position: | 172-380 |
| Cow position: | chr8:3748599-3748391 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-394 |
| Cow position: | chr8:45794151-45793927 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 38, 164 |
| Conread position: | 172-394 |
| Cow position: | chr8:50995389-50995611 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 198, 162 |
| Conread position: | 172-397 |
| Cow position: | chr8:3855423-3855196 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-399 |
| Cow position: | chr8:50929513-50929276 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 172 |
| Conread position: | 172-401 |
| Cow position: | chr8:3786232-3786461 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 172-401 |
| Cow position: | chr8:4688003-4688232 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 93 |
| Conread position: | 172-401 |
| Cow position: | chr8:5017788-5018009 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 172-401 |
| Cow position: | chr8:8912085-8912312 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 149 |
| Conread position: | 172-401 |
| Cow position: | chr8:10742046-10741814 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 30, 165 |
| Conread position: | 172-401 |
| Cow position: | chr8:12313805-12313572 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 38, 160 |
| Conread position: | 172-401 |
| Cow position: | chr8:12450645-12450873 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 163 |
| Conread position: | 172-401 |
| Cow position: | chr8:14927277-14927053 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 209, 21 |
| Conread position: | 172-401 |
| Cow position: | chr8:17312657-17312885 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 30, 132 |
| Conread position: | 172-401 |
| Cow position: | chr8:19052053-19052283 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr8:24914718-24914490 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 172-401 |
| Cow position: | chr8:36634908-36634678 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 31, 163 |
| Conread position: | 172-401 |
| Cow position: | chr8:47660720-47660490 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-402 |
| Cow position: | chr8:7162499-7162730 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-405 |
| Cow position: | chr8:11824496-11824732 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 172-405 |
| Cow position: | chr8:39194612-39194378 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-405 |
| Cow position: | chr8:47674447-47674671 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 174-402 |
| Cow position: | chr8:21584789-21585021 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 164 |
| Conread position: | 174-405 |
| Cow position: | chr8:18054331-18054558 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 174-405 |
| Cow position: | chr8:53428090-53428323 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 178-369 |
| Cow position: | chr8:47453991-47453800 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-377 |
| Cow position: | chr8:9736850-9737052 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 163 |
| Conread position: | 178-399 |
| Cow position: | chr8:37654251-37654029 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-401 |
| Cow position: | chr8:33589990-33590214 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 156 |
| Conread position: | 178-401 |
| Cow position: | chr8:38392235-38392458 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 178-405 |
| Cow position: | chr8:1347643-1347415 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr8:21157183-21156954 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 178-405 |
| Cow position: | chr8:21230684-21230919 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 64, 164 |
| Conread position: | 178-405 |
| Cow position: | chr8:25377586-25377812 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 132 |
| Conread position: | 178-405 |
| Cow position: | chr8:34349278-34349506 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 156 |
| Conread position: | 178-405 |
| Cow position: | chr8:37655948-37655720 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-405 |
| Cow position: | chr8:55086138-55086363 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 35, 91 |
| Conread position: | 179-405 |
| Cow position: | chr8:14631055-14630828 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 23, 156 |
| Conread position: | 180-373 |
| Cow position: | chr8:16090460-16090644 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 181-405 |
| Cow position: | chr8:31984747-31984969 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 20, 77 |
| Conread position: | 185-405 |
| Cow position: | chr8:18210836-18210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 16, 53 |
| Conread position: | 190-382 |
| Cow position: | chr8:46632064-46631878 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 190-401 |
| Cow position: | chr8:19332193-19332404 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 119 |
| Conread position: | 197-405 |
| Cow position: | chr8:13316253-13316461 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 139, 57 |
| Conread position: | 200-339 |
| Cow position: | chr8:46949383-46949522 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 200-361 |
| Cow position: | chr8:49218356-49218514 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 230-405 |
| Cow position: | chr8:47068156-47067981 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 151, 103 |
| Conread position: | 253-405 |
| Cow position: | chr8:11776298-11776453 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 13 |
Show alignments to all cow chromosomes.