Cow genome map
| Conread name: | rpigcf0_002377.y1 |
| Conread position: | 160-401 |
| Cow position: | chr9:30673622-30673863 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 50, 138 |
| Conread position: | 168-405 |
| Cow position: | chr9:1638106-1638342 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 59 |
| Conread position: | 170-340 |
| Cow position: | chr9:30191135-30190965 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 170-355 |
| Cow position: | chr9:59447762-59447945 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 98 |
| Conread position: | 170-394 |
| Cow position: | chr9:9211789-9211567 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 113 |
| Conread position: | 170-394 |
| Cow position: | chr9:54925786-54926013 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 113 |
| Conread position: | 170-401 |
| Cow position: | chr9:9014327-9014555 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 46, 95 |
| Conread position: | 170-401 |
| Cow position: | chr9:26737165-26737394 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 32, 103 |
| Conread position: | 170-401 |
| Cow position: | chr9:28023055-28023284 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 17, 46 |
| Conread position: | 170-405 |
| Cow position: | chr9:3936192-3935969 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 57 |
| Conread position: | 170-405 |
| Cow position: | chr9:4717428-4717656 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 170-405 |
| Cow position: | chr9:5141953-5142185 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 32, 99 |
| Conread position: | 170-405 |
| Cow position: | chr9:20939563-20939799 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 32, 165 |
| Conread position: | 170-405 |
| Cow position: | chr9:29332503-29332738 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 170-405 |
| Cow position: | chr9:35594827-35594594 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 211, 17 |
| Conread position: | 171-359 |
| Cow position: | chr9:26083316-26083125 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 133 |
| Conread position: | 171-405 |
| Cow position: | chr9:3224385-3224153 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 133 |
| Conread position: | 171-405 |
| Cow position: | chr9:13474520-13474287 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 95 |
| Conread position: | 171-405 |
| Cow position: | chr9:26567856-26568090 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 87, 180 |
| Conread position: | 172-310 |
| Cow position: | chr9:1995132-1994993 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 172-318 |
| Cow position: | chr9:6250555-6250702 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 172-358 |
| Cow position: | chr9:60276762-60276577 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 58 |
| Conread position: | 172-361 |
| Cow position: | chr9:29026953-29026764 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-361 |
| Cow position: | chr9:59481543-59481355 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-380 |
| Cow position: | chr9:47003431-47003639 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-394 |
| Cow position: | chr9:3962870-3962647 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 188 |
| Conread position: | 172-397 |
| Cow position: | chr9:17304721-17304495 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr9:5005240-5005469 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 209, 162 |
| Conread position: | 172-401 |
| Cow position: | chr9:7003984-7004217 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 172 |
| Conread position: | 172-401 |
| Cow position: | chr9:7158683-7158459 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 187, 94 |
| Conread position: | 172-401 |
| Cow position: | chr9:22654833-22655063 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-401 |
| Cow position: | chr9:27036157-27036384 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 172-401 |
| Cow position: | chr9:32970198-32970427 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 172-401 |
| Cow position: | chr9:42310933-42311162 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 209, 162 |
| Conread position: | 172-401 |
| Cow position: | chr9:51180925-51180696 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 163 |
| Conread position: | 172-401 |
| Cow position: | chr9:59537352-59537584 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 30, 165 |
| Conread position: | 172-405 |
| Cow position: | chr9:3727848-3728073 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 172-405 |
| Cow position: | chr9:7060822-7060588 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 30, 163 |
| Conread position: | 172-405 |
| Cow position: | chr9:59428260-59428488 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 128 |
| Conread position: | 173-347 |
| Cow position: | chr9:60462670-60462497 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 155 |
| Conread position: | 173-354 |
| Cow position: | chr9:3168167-3168344 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 173-364 |
| Cow position: | chr9:20176451-20176264 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 173-405 |
| Cow position: | chr9:30435838-30436060 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 33 |
| Conread position: | 176-401 |
| Cow position: | chr9:37161552-37161330 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 26, 92 |
| Conread position: | 178-394 |
| Cow position: | chr9:7105168-7104951 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 178-401 |
| Cow position: | chr9:4533753-4533977 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 22, 158 |
| Conread position: | 178-401 |
| Cow position: | chr9:27783451-27783669 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 178-405 |
| Cow position: | chr9:12913039-12913265 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 87, 126 |
| Conread position: | 178-405 |
| Cow position: | chr9:18508563-18508338 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 24, 124 |
| Conread position: | 178-405 |
| Cow position: | chr9:31065980-31066206 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 203, 15 |
| Conread position: | 178-405 |
| Cow position: | chr9:38677407-38677632 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 178-405 |
| Cow position: | chr9:50093977-50093749 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 163 |
| Conread position: | 179-394 |
| Cow position: | chr9:3004983-3004767 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 23, 156 |
| Conread position: | 179-394 |
| Cow position: | chr9:31808845-31809052 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 95 |
| Conread position: | 182-380 |
| Cow position: | chr9:21410565-21410767 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 159 |
| Conread position: | 182-394 |
| Cow position: | chr9:650760-650548 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 76, 54 |
| Conread position: | 186-401 |
| Cow position: | chr9:19158266-19158049 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 16, 150 |
| Conread position: | 195-405 |
| Cow position: | chr9:34724784-34724995 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 72, 138 |
| Conread position: | 218-405 |
| Cow position: | chr9:4308060-4307878 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 250-405 |
| Cow position: | chr9:28679298-28679453 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 131, 84 |
| Conread position: | 251-405 |
| Cow position: | chr9:10976449-10976603 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 130, 89 |
Show alignments to all cow chromosomes.