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Cow genome map

           
Conread name:
           
rpigcf0_002703.y1
        

               
Conread position:
               
6-303
               

               
Cow position:
               
chr21:49699739-49700020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
5, 32
               

               
Conread position:
               
7-310
               

               
Cow position:
               
chr21:9416537-9416257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
206, 30
               

               
Conread position:
               
9-310
               

               
Cow position:
               
chr21:28919236-28919515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
12, 20
               

               
Conread position:
               
10-310
               

               
Cow position:
               
chr21:742567-742294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
263, 14
               

               
Conread position:
               
12-267
               

               
Cow position:
               
chr21:9417851-9418104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
14-310
               

               
Cow position:
               
chr21:38720540-38720261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
15-242
               

               
Cow position:
               
chr21:27744317-27744100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
15-274
               

               
Cow position:
               
chr21:20213484-20213733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
15-310
               

               
Cow position:
               
chr21:17184208-17183932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
15-310
               

               
Cow position:
               
chr21:30255967-30256261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
97, 194
               

               
Conread position:
               
16-227
               

               
Cow position:
               
chr21:32272217-32272011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
17-241
               

               
Cow position:
               
chr21:7539232-7539451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
17-307
               

               
Cow position:
               
chr21:4281591-4281861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
21, 94
               

               
Conread position:
               
17-310
               

               
Cow position:
               
chr21:8430811-8431093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
259, 25
               

               
Conread position:
               
17-310
               

               
Cow position:
               
chr21:20160966-20160687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
18-222
               

               
Cow position:
               
chr21:48334501-48334696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
18-308
               

               
Cow position:
               
chr21:31652674-31652403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
18-309
               

               
Cow position:
               
chr21:26245215-26244928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
18-310
               

               
Cow position:
               
chr21:41974078-41974366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
19-275
               

               
Cow position:
               
chr21:40475785-40475542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
19-278
               

               
Cow position:
               
chr21:27711950-27712203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
164, 9
               

               
Conread position:
               
19-309
               

               
Cow position:
               
chr21:40432748-40432459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
95, 13
               

               
Conread position:
               
20-274
               

               
Cow position:
               
chr21:30938382-30938628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
206, 8
               

               
Conread position:
               
21-238
               

               
Cow position:
               
chr21:41738188-41737988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
21-254
               

               
Cow position:
               
chr21:29418856-29418636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
21-255
               

               
Cow position:
               
chr21:32297223-32297456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 89
               

               
Conread position:
               
21-265
               

               
Cow position:
               
chr21:5218992-5218755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
184, 88
               

               
Conread position:
               
21-268
               

               
Cow position:
               
chr21:6154083-6153852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
22-238
               

               
Cow position:
               
chr21:22720849-22720654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
22-247
               

               
Cow position:
               
chr21:5214638-5214419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
22-310
               

               
Cow position:
               
chr21:40589198-40589476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
227, 25
               

               
Conread position:
               
23-238
               

               
Cow position:
               
chr21:25159474-25159251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
24-279
               

               
Cow position:
               
chr21:42131056-42131314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 241
               

               
Conread position:
               
24-299
               

               
Cow position:
               
chr21:9278809-9278544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
189, 62
               

               
Conread position:
               
24-308
               

               
Cow position:
               
chr21:34014-33732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 85
               

               
Conread position:
               
25-307
               

               
Cow position:
               
chr21:37296785-37297073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 259
               

               
Conread position:
               
25-308
               

               
Cow position:
               
chr21:16915061-16914785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
217, 83
               

               
Conread position:
               
25-310
               

               
Cow position:
               
chr21:47327-47047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
257, 84
               

               
Conread position:
               
26-237
               

               
Cow position:
               
chr21:16797132-16796932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
28-296
               

               
Cow position:
               
chr21:42145098-42144850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 69
               

               
Conread position:
               
28-307
               

               
Cow position:
               
chr21:6051783-6051518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
7, 89
               

               
Conread position:
               
28-309
               

               
Cow position:
               
chr21:13365642-13365350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
80, 210
               

               
Conread position:
               
28-310
               

               
Cow position:
               
chr21:30835642-30835372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
246, 8
               

               
Conread position:
               
28-310
               

               
Cow position:
               
chr21:41621406-41621133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
8, 82
               

               
Conread position:
               
28-310
               

               
Cow position:
               
chr21:46132868-46132584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
29-310
               

               
Cow position:
               
chr21:28924402-28924119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 100
               

               
Conread position:
               
30-310
               

               
Cow position:
               
chr21:12461693-12461961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 80
               

               
Conread position:
               
30-310
               

               
Cow position:
               
chr21:13584776-13585045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 85
               

               
Conread position:
               
30-310
               

               
Cow position:
               
chr21:28733638-28733905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
251, 17
               

               
Conread position:
               
31-239
               

               
Cow position:
               
chr21:30970209-30970014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
31-308
               

               
Cow position:
               
chr21:42841311-42841589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
256, 94
               

               
Conread position:
               
31-310
               

               
Cow position:
               
chr21:28244744-28244478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
11, 80
               

               
Conread position:
               
32-275
               

               
Cow position:
               
chr21:20318785-20318556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
32-309
               

               
Cow position:
               
chr21:45835117-45835392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
148, 77
               

               
Conread position:
               
32-310
               

               
Cow position:
               
chr21:16152713-16152445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
211, 77
               

               
Conread position:
               
32-310
               

               
Cow position:
               
chr21:42501325-42501048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
207, 77
               

               
Conread position:
               
32-310
               

               
Cow position:
               
chr21:44825602-44825882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
97, 62
               

               
Conread position:
               
33-195
               

               
Cow position:
               
chr21:48242779-48242933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
33-308
               

               
Cow position:
               
chr21:40266396-40266135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
34-307
               

               
Cow position:
               
chr21:11779267-11779519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
34-310
               

               
Cow position:
               
chr21:23673018-23672759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
34-310
               

               
Cow position:
               
chr21:44251570-44251834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
35-275
               

               
Cow position:
               
chr21:18341489-18341261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
194, 30
               

               
Conread position:
               
37-227
               

               
Cow position:
               
chr21:40089497-40089678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 21
               

               
Conread position:
               
37-247
               

               
Cow position:
               
chr21:8986294-8986093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
37-273
               

               
Cow position:
               
chr21:40291486-40291701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
37-294
               

               
Cow position:
               
chr21:42562917-42562658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
75, 191
               

               
Conread position:
               
37-295
               

               
Cow position:
               
chr21:36763330-36763085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
37-306
               

               
Cow position:
               
chr21:39888458-39888735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 110
               

               
Conread position:
               
37-308
               

               
Cow position:
               
chr21:868651-868915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 72
               

               
Conread position:
               
37-308
               

               
Cow position:
               
chr21:5465015-5464758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
253, 72
               

               
Conread position:
               
37-310
               

               
Cow position:
               
chr21:6713256-6713517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
194, 78
               

               
Conread position:
               
38-279
               

               
Cow position:
               
chr21:41041215-41040983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
38-310
               

               
Cow position:
               
chr21:11739854-11740112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
243, 13
               

               
Conread position:
               
39-248
               

               
Cow position:
               
chr21:46264457-46264237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
39-269
               

               
Cow position:
               
chr21:8648543-8648312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
69, 87
               

               
Conread position:
               
39-284
               

               
Cow position:
               
chr21:30980293-30980543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
69, 182
               

               
Conread position:
               
39-306
               

               
Cow position:
               
chr21:27568893-27569158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
69, 177
               

               
Conread position:
               
40-272
               

               
Cow position:
               
chr21:1562265-1562496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
68, 87
               

               
Conread position:
               
42-245
               

               
Cow position:
               
chr21:26658698-26658909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
42-303
               

               
Cow position:
               
chr21:10264298-10264048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
42-303
               

               
Cow position:
               
chr21:37706149-37706404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
234, 67
               

               
Conread position:
               
42-310
               

               
Cow position:
               
chr21:26647735-26648002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
61, 125
               

               
Conread position:
               
42-310
               

               
Cow position:
               
chr21:47363461-47363729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
44-304
               

               
Cow position:
               
chr21:12739349-12739094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
215, 59
               

               
Conread position:
               
44-310
               

               
Cow position:
               
chr21:22209982-22210235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
96, 71
               

               
Conread position:
               
44-310
               

               
Cow position:
               
chr21:36795885-36795609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
46-238
               

               
Cow position:
               
chr21:40457867-40457681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
74, 51
               

               
Conread position:
               
46-244
               

               
Cow position:
               
chr21:15305036-15305225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
46-248
               

               
Cow position:
               
chr21:11006509-11006700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
46-257
               

               
Cow position:
               
chr21:48482271-48482467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
46-266
               

               
Cow position:
               
chr21:2536877-2537087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
46-274
               

               
Cow position:
               
chr21:41610438-41610211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
133, 61
               

               
Conread position:
               
46-307
               

               
Cow position:
               
chr21:44829497-44829744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
46-308
               

               
Cow position:
               
chr21:23535972-23535723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
46-309
               

               
Cow position:
               
chr21:42384795-42384520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
62, 245
               

               
Conread position:
               
46-310
               

               
Cow position:
               
chr21:20153216-20152963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
104, 62
               

               
Conread position:
               
46-310
               

               
Cow position:
               
chr21:22718524-22718775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
230, 48
               

               
Conread position:
               
46-310
               

               
Cow position:
               
chr21:36910210-36909944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
47-249
               

               
Cow position:
               
chr21:11743235-11743435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
103, 70
               

               
Conread position:
               
47-274
               

               
Cow position:
               
chr21:46809506-46809727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
194, 50
               

               
Conread position:
               
47-308
               

               
Cow position:
               
chr21:29069065-29069318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
170, 59
               

               
Conread position:
               
47-310
               

               
Cow position:
               
chr21:957927-957681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
48-261
               

               
Cow position:
               
chr21:29001890-29002098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
178, 5
               

               
Conread position:
               
48-274
               

               
Cow position:
               
chr21:13164136-13163903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
68, 25
               

               
Conread position:
               
48-308
               

               
Cow position:
               
chr21:3585107-3585357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
48-309
               

               
Cow position:
               
chr21:47713750-47713995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
233, 75
               

               
Conread position:
               
49-306
               

               
Cow position:
               
chr21:11644710-11644957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
101, 60
               

               
Conread position:
               
50-310
               

               
Cow position:
               
chr21:29014282-29014553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 229
               

               
Conread position:
               
51-226
               

               
Cow position:
               
chr21:48478619-48478806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
51-258
               

               
Cow position:
               
chr21:32647932-32648131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
196, 57
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr21:1764605-1764853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
126, 49
               

               
Conread position:
               
53-310
               

               
Cow position:
               
chr21:13589014-13588771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
235, 54
               

               
Conread position:
               
56-239
               

               
Cow position:
               
chr21:42355890-42355709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
56-267
               

               
Cow position:
               
chr21:8978718-8978500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 182
               

               
Conread position:
               
56-268
               

               
Cow position:
               
chr21:14228011-14228230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
56-271
               

               
Cow position:
               
chr21:28237450-28237659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
56-287
               

               
Cow position:
               
chr21:24266312-24266534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
212, 53
               

               
Conread position:
               
57-310
               

               
Cow position:
               
chr21:10410471-10410229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
217, 38
               

               
Conread position:
               
59-309
               

               
Cow position:
               
chr21:19359914-19360167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
66-309
               

               
Cow position:
               
chr21:7377684-7377917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
75-257
               

               
Cow position:
               
chr21:5406060-5405877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
79-283
               

               
Cow position:
               
chr21:44591968-44592173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
44, 199
               

               
Conread position:
               
79-308
               

               
Cow position:
               
chr21:23321837-23322067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
61, 200
               

               
Conread position:
               
80-310
               

               
Cow position:
               
chr21:15911643-15911409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
119-310
               

               
Cow position:
               
chr21:641786-641595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
169, 150
               

               
Conread position:
               
120-257
               

               
Cow position:
               
chr21:41051085-41050950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
120-310
               

               
Cow position:
               
chr21:28030486-28030297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
122-306
               

               
Cow position:
               
chr21:19868759-19868944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
124-274
               

               
Cow position:
               
chr21:713139-712986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
124-308
               

               
Cow position:
               
chr21:24642706-24642531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
170, 50
               

               
Conread position:
               
124-309
               

               
Cow position:
               
chr21:976947-977133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 159
               

               
Conread position:
               
124-310
               

               
Cow position:
               
chr21:734783-734605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
124-310
               

               
Cow position:
               
chr21:1591747-1591561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
124-310
               

               
Cow position:
               
chr21:7581711-7581893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
124-310
               

               
Cow position:
               
chr21:18779782-18779962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
125-295
               

               
Cow position:
               
chr21:17983170-17983003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
125-307
               

               
Cow position:
               
chr21:1511484-1511304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
125-309
               

               
Cow position:
               
chr21:3360822-3361004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
83, 118
               

               
Conread position:
               
125-309
               

               
Cow position:
               
chr21:17642793-17642974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
125-310
               

               
Cow position:
               
chr21:643517-643333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
126-309
               

               
Cow position:
               
chr21:23587073-23586890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
150, 42
               

               
Conread position:
               
127-273
               

               
Cow position:
               
chr21:46470374-46470231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
127-283
               

               
Cow position:
               
chr21:8213092-8213243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
127-283
               

               
Cow position:
               
chr21:30119885-30119730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
127-283
               

               
Cow position:
               
chr21:41598002-41597847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
127-308
               

               
Cow position:
               
chr21:19259010-19258835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 102
               

               
Conread position:
               
127-308
               

               
Cow position:
               
chr21:41287602-41287784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
127-310
               

               
Cow position:
               
chr21:7768629-7768443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
149, 168
               

               
Conread position:
               
127-310
               

               
Cow position:
               
chr21:44565531-44565711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
157, 85
               

               
Conread position:
               
128-309
               

               
Cow position:
               
chr21:33413898-33414076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
163, 114
               

               
Conread position:
               
129-257
               

               
Cow position:
               
chr21:26735593-26735470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
129-310
               

               
Cow position:
               
chr21:42135427-42135611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
129-310
               

               
Cow position:
               
chr21:45970985-45971162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
131-273
               

               
Cow position:
               
chr21:22939957-22939812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
131-310
               

               
Cow position:
               
chr21:30157619-30157800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
157, 22
               

               
Conread position:
               
133-310
               

               
Cow position:
               
chr21:15544043-15544209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 87
               

               
Conread position:
               
133-310
               

               
Cow position:
               
chr21:37344916-37345088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
135-242
               

               
Cow position:
               
chr21:41994867-41994974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
135-283
               

               
Cow position:
               
chr21:25383209-25383059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
135-291
               

               
Cow position:
               
chr21:10673304-10673147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
135-304
               

               
Cow position:
               
chr21:10151988-10151813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
135-304
               

               
Cow position:
               
chr21:38900957-38900791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
5, 61
               

               
Conread position:
               
135-308
               

               
Cow position:
               
chr21:14760748-14760583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
149, 107
               

               
Conread position:
               
135-309
               

               
Cow position:
               
chr21:18064735-18064904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
135-310
               

               
Cow position:
               
chr21:8206953-8206777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
155, 48
               

               
Conread position:
               
135-310
               

               
Cow position:
               
chr21:13395781-13395605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
70, 148
               

               
Conread position:
               
135-310
               

               
Cow position:
               
chr21:15976815-15976642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
156, 55
               

               
Conread position:
               
135-310
               

               
Cow position:
               
chr21:29978577-29978751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
135-310
               

               
Cow position:
               
chr21:33350924-33350749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
146, 134
               

               
Conread position:
               
135-310
               

               
Cow position:
               
chr21:36508417-36508250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
135-310
               

               
Cow position:
               
chr21:46848945-46849118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
157, 93
               

               
Conread position:
               
135-310
               

               
Cow position:
               
chr21:47763935-47764106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
136-263
               

               
Cow position:
               
chr21:21940226-21940352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
136-283
               

               
Cow position:
               
chr21:37837884-37838030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
136-309
               

               
Cow position:
               
chr21:396049-395880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
136-309
               

               
Cow position:
               
chr21:7584032-7583856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
140, 158
               

               
Conread position:
               
136-309
               

               
Cow position:
               
chr21:32339558-32339727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
136-310
               

               
Cow position:
               
chr21:2657991-2657817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
152, 164
               

               
Conread position:
               
136-310
               

               
Cow position:
               
chr21:40168444-40168618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 77
               

               
Conread position:
               
137-257
               

               
Cow position:
               
chr21:8686962-8687082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
137-257
               

               
Cow position:
               
chr21:34738759-34738638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
137-274
               

               
Cow position:
               
chr21:13225896-13225759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
137-308
               

               
Cow position:
               
chr21:28810081-28810252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
90, 58
               

               
Conread position:
               
137-310
               

               
Cow position:
               
chr21:6998128-6997949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
101, 146
               

               
Conread position:
               
137-310
               

               
Cow position:
               
chr21:10001256-10001084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
72, 79
               

               
Conread position:
               
137-310
               

               
Cow position:
               
chr21:10118746-10118568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
137-310
               

               
Cow position:
               
chr21:27863333-27863507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
151, 25
               

               
Conread position:
               
137-310
               

               
Cow position:
               
chr21:42209448-42209622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
138-299
               

               
Cow position:
               
chr21:42463514-42463669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 87
               

               
Conread position:
               
138-310
               

               
Cow position:
               
chr21:10538075-10538243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
139-310
               

               
Cow position:
               
chr21:15584240-15584411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
154, 137
               

               
Conread position:
               
141-249
               

               
Cow position:
               
chr21:17302680-17302572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
141-273
               

               
Cow position:
               
chr21:7493096-7493222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
141-306
               

               
Cow position:
               
chr21:40769470-40769303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
141-307
               

               
Cow position:
               
chr21:31159574-31159415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
147-281
               

               
Cow position:
               
chr21:12207631-12207765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
148-274
               

               
Cow position:
               
chr21:7221170-7221296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
149-280
               

               
Cow position:
               
chr21:35647659-35647790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
149-310
               

               
Cow position:
               
chr21:21907265-21907420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
153-283
               

               
Cow position:
               
chr21:8231513-8231641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
153-310
               

               
Cow position:
               
chr21:23460298-23460149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
157-308
               

               
Cow position:
               
chr21:5567147-5566996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
134, 64
               

               
Conread position:
               
164-308
               

               
Cow position:
               
chr21:36789950-36789802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 131
               

               
Conread position:
               
168-310
               

               
Cow position:
               
chr21:10561433-10561575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
118, 129
               

               
Conread position:
               
169-310
               

               
Cow position:
               
chr21:30606937-30607080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
170-309
               

               
Cow position:
               
chr21:43357108-43357249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
106, 59
               
Show alignments to all cow chromosomes.