Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-114 |
| Cow position: | chr12:44542244-44542359 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-119 |
| Cow position: | chr12:41159568-41159685 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-140 |
| Cow position: | chr12:34161391-34161531 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 1-148 |
| Cow position: | chr12:29969557-29969707 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 1-193 |
| Cow position: | chr12:27572262-27572056 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-194 |
| Cow position: | chr12:18020836-18021032 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-194 |
| Cow position: | chr12:18765995-18765791 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 180 |
| Conread position: | 1-197 |
| Cow position: | chr12:32419393-32419188 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 1-200 |
| Cow position: | chr12:36261667-36261854 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-200 |
| Cow position: | chr12:45168041-45167848 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 1-202 |
| Cow position: | chr12:8943246-8943054 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 1-204 |
| Cow position: | chr12:7110175-7110373 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 1-204 |
| Cow position: | chr12:19502450-19502250 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 1-204 |
| Cow position: | chr12:44622333-44622525 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 1-205 |
| Cow position: | chr12:1106280-1106080 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 90, 23 |
| Conread position: | 1-205 |
| Cow position: | chr12:5543815-5543603 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 104, 28 |
| Conread position: | 1-205 |
| Cow position: | chr12:24568751-24568555 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 1-208 |
| Cow position: | chr12:7854232-7854016 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-208 |
| Cow position: | chr12:20355193-20355390 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 1-208 |
| Cow position: | chr12:44920013-44920226 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-208 |
| Cow position: | chr12:46120854-46120650 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 101 |
| Conread position: | 1-209 |
| Cow position: | chr12:31883316-31883517 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 98 |
| Conread position: | 1-212 |
| Cow position: | chr12:32051488-32051692 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 1-215 |
| Cow position: | chr12:34473643-34473433 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 1-220 |
| Cow position: | chr12:33319690-33319461 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 206 |
| Conread position: | 1-222 |
| Cow position: | chr12:29200416-29200195 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 113 |
| Conread position: | 1-225 |
| Cow position: | chr12:34165561-34165777 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 2-197 |
| Cow position: | chr12:36994137-36993936 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 2-200 |
| Cow position: | chr12:15832176-15832367 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 2-203 |
| Cow position: | chr12:41214206-41214009 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 2-205 |
| Cow position: | chr12:12300902-12301093 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 194, 14 |
| Conread position: | 2-205 |
| Cow position: | chr12:23913032-23912814 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 2-208 |
| Cow position: | chr12:23836309-23836505 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 2-210 |
| Cow position: | chr12:32391897-32392102 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 2-215 |
| Cow position: | chr12:34877809-34878015 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 3-189 |
| Cow position: | chr12:6226164-6225973 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 48 |
| Conread position: | 3-197 |
| Cow position: | chr12:25444894-25445094 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 142 |
| Conread position: | 3-200 |
| Cow position: | chr12:27430486-27430680 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 97 |
| Conread position: | 3-204 |
| Cow position: | chr12:43860683-43860482 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 111 |
| Conread position: | 3-205 |
| Cow position: | chr12:15163118-15163323 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 6, 128 |
| Conread position: | 3-205 |
| Cow position: | chr12:22882036-22882246 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-205 |
| Cow position: | chr12:25456388-25456586 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 101 |
| Conread position: | 3-208 |
| Cow position: | chr12:43551242-43551048 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 3-209 |
| Cow position: | chr12:30919405-30919603 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 28, 96 |
| Conread position: | 3-222 |
| Cow position: | chr12:28651093-28651304 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 165 |
| Conread position: | 3-228 |
| Cow position: | chr12:3675547-3675329 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 27, 68 |
| Conread position: | 3-231 |
| Cow position: | chr12:7000623-7000392 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 4-193 |
| Cow position: | chr12:14131787-14131595 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 4-200 |
| Cow position: | chr12:34148380-34148179 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 4-203 |
| Cow position: | chr12:22469493-22469685 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 101 |
| Conread position: | 5-200 |
| Cow position: | chr12:22341228-22341419 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 26, 95 |
| Conread position: | 5-200 |
| Cow position: | chr12:34275600-34275807 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 5-211 |
| Cow position: | chr12:6720309-6720518 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 84 |
| Conread position: | 7-171 |
| Cow position: | chr12:42698261-42698102 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 8-215 |
| Cow position: | chr12:28598248-28598446 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 11-185 |
| Cow position: | chr12:24186503-24186332 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 6, 106 |
| Conread position: | 11-208 |
| Cow position: | chr12:4962622-4962822 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 19, 108 |
| Conread position: | 11-209 |
| Cow position: | chr12:15790046-15790246 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 17, 81 |
| Conread position: | 11-225 |
| Cow position: | chr12:23764473-23764685 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 15-143 |
| Cow position: | chr12:45723304-45723432 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 102 |
| Conread position: | 17-225 |
| Cow position: | chr12:11583703-11583905 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 29-204 |
| Cow position: | chr12:29770571-29770387 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 30-208 |
| Cow position: | chr12:38002133-38002304 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 33-200 |
| Cow position: | chr12:1848485-1848312 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 37-210 |
| Cow position: | chr12:11950153-11950327 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 39-205 |
| Cow position: | chr12:36012612-36012447 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 51-192 |
| Cow position: | chr12:3598701-3598559 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 138 |
| Conread position: | 52-206 |
| Cow position: | chr12:45606864-45607016 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 96-566 |
| Cow position: | chr12:25551433-25550957 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 35, 7 |
| Conread position: | 119-565 |
| Cow position: | chr12:21304981-21304535 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 80, 188 |
| Conread position: | 187-543 |
| Cow position: | chr12:32285379-32285725 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 52, 101 |
| Conread position: | 202-569 |
| Cow position: | chr12:10486914-10487281 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 221 |
| Conread position: | 228-569 |
| Cow position: | chr12:1994327-1993990 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 235-570 |
| Cow position: | chr12:36199577-36199910 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 126, 82 |
| Conread position: | 278-563 |
| Cow position: | chr12:27094477-27094196 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 295-564 |
| Cow position: | chr12:27809145-27808876 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 68, 109 |
| Conread position: | 306-565 |
| Cow position: | chr12:10189156-10188903 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 62, 86 |
Show alignments to all cow chromosomes.