Cow genome map

Conread name: rpigcf0_003029.y1

Conread position: 1-109
Cow position: chr13:34261200-34261088 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 29, 0

Conread position: 1-112
Cow position: chr13:24110449-24110336 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 30, 46

Conread position: 1-119
Cow position: chr13:24230183-24230062 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 29, 0

Conread position: 1-120
Cow position: chr13:14576182-14576061 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 67

Conread position: 1-130
Cow position: chr13:21295044-21294913 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 1-135
Cow position: chr13:14771421-14771285 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 77

Conread position: 1-135
Cow position: chr13:17439802-17439935 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 28, 0

Conread position: 1-135
Cow position: chr13:37640558-37640423 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 29, 87

Conread position: 1-162
Cow position: chr13:39367932-39367764 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 19, 114

Conread position: 1-183
Cow position: chr13:1043000-1043190 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 1-187
Cow position: chr13:42229278-42229102 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 1-192
Cow position: chr13:5079395-5079583 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 100

Conread position: 1-194
Cow position: chr13:17977319-17977136 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 1-197
Cow position: chr13:37803861-37803670 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 30, 101

Conread position: 1-197
Cow position: chr13:52586068-52586271 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 1-200
Cow position: chr13:7076226-7076028 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 29, 116

Conread position: 1-200
Cow position: chr13:17619581-17619381 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 29, 119

Conread position: 1-200
Cow position: chr13:18696809-18696611 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 75

Conread position: 1-200
Cow position: chr13:39398620-39398418 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 0

Conread position: 1-200
Cow position: chr13:42640355-42640168 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 116

Conread position: 1-201
Cow position: chr13:17350319-17350130 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 1-201
Cow position: chr13:45023243-45023436 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 1-202
Cow position: chr13:20679308-20679099 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 29, 190

Conread position: 1-204
Cow position: chr13:25520946-25521140 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 100

Conread position: 1-204
Cow position: chr13:51116055-51116272 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 29, 0

Conread position: 1-204
Cow position: chr13:55316222-55316440 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 1-205
Cow position: chr13:52880899-52881101 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 141
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 1-206
Cow position: chr13:8355173-8354960 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 0

Conread position: 1-208
Cow position: chr13:20531505-20531716 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 32, 0

Conread position: 1-208
Cow position: chr13:20706236-20706445 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 141
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 126

Conread position: 1-208
Cow position: chr13:37621391-37621595 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 28, 0

Conread position: 1-208
Cow position: chr13:47644033-47643828 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 120

Conread position: 1-209
Cow position: chr13:8609578-8609791 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 1-210
Cow position: chr13:3211518-3211288 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 29, 0

Conread position: 1-210
Cow position: chr13:51940703-51940490 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 1-211
Cow position: chr13:17563708-17563496 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 87

Conread position: 1-211
Cow position: chr13:19750684-19750473 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 43

Conread position: 1-212
Cow position: chr13:23167132-23167341 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 29, 175

Conread position: 1-228
Cow position: chr13:3315706-3315925 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 29, 128

Conread position: 1-246
Cow position: chr13:49255271-49255522 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 141

Conread position: 2-148
Cow position: chr13:32363212-32363359 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 28, 140

Conread position: 2-195
Cow position: chr13:2413997-2413797 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 51

Conread position: 2-200
Cow position: chr13:185498-185293 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 28, 0

Conread position: 2-205
Cow position: chr13:13775275-13775470 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 29, 98

Conread position: 2-213
Cow position: chr13:6183452-6183656 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 28, 101

Conread position: 2-215
Cow position: chr13:7702161-7702371 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 196, 112

Conread position: 3-113
Cow position: chr13:7104621-7104508 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 3-149
Cow position: chr13:36771455-36771604 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 43

Conread position: 3-205
Cow position: chr13:29631575-29631371 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 166

Conread position: 3-205
Cow position: chr13:43787870-43788065 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 28, 101

Conread position: 3-205
Cow position: chr13:43839709-43839904 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 101

Conread position: 3-208
Cow position: chr13:25450519-25450735 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 27, 77

Conread position: 3-208
Cow position: chr13:42017842-42018060 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 5

Conread position: 3-215
Cow position: chr13:9265862-9266075 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 27, 12

Conread position: 4-191
Cow position: chr13:8350289-8350099 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 101

Conread position: 4-199
Cow position: chr13:29957987-29957797 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 134
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 17, 0

Conread position: 4-205
Cow position: chr13:18215332-18215141 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 26, 88

Conread position: 4-208
Cow position: chr13:4981010-4980794 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 73, 25

Conread position: 5-201
Cow position: chr13:38872979-38873170 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 25, 102

Conread position: 5-208
Cow position: chr13:13182159-13181948 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 24

Conread position: 5-219
Cow position: chr13:9900119-9899918 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 155, 15

Conread position: 6-205
Cow position: chr13:19178142-19177953 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 72

Conread position: 7-201
Cow position: chr13:38702666-38702850 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 46

Conread position: 8-152
Cow position: chr13:41616086-41616230 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 23, 35

Conread position: 9-229
Cow position: chr13:32186241-32186024 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 95

Conread position: 11-205
Cow position: chr13:32914301-32914479 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 11-225
Cow position: chr13:5930349-5930549 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 189, 18

Conread position: 13-204
Cow position: chr13:29907997-29908198 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 15-206
Cow position: chr13:27419121-27419307 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 84

Conread position: 15-207
Cow position: chr13:17619847-17619659 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 16, 86

Conread position: 17-209
Cow position: chr13:43811893-43811707 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 81

Conread position: 19-204
Cow position: chr13:26743097-26742909 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 32-203
Cow position: chr13:4420267-4420086 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 37-200
Cow position: chr13:45141991-45142148 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 66

Conread position: 39-208
Cow position: chr13:20684199-20684371 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 42-200
Cow position: chr13:37820608-37820770 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 74

Conread position: 51-208
Cow position: chr13:54689458-54689303 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 58-210
Cow position: chr13:372489-372633 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 71-206
Cow position: chr13:9589243-9589106 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 102

Conread position: 98-203
Cow position: chr13:50712949-50712842 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 99-566
Cow position: chr13:1840224-1839753 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 34

Conread position: 100-233
Cow position: chr13:41616515-41616645 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 113-569
Cow position: chr13:24109888-24109424 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 30

Conread position: 127-569
Cow position: chr13:41607585-41608030 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 137

Conread position: 196-563
Cow position: chr13:46465941-46465571 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 154

Conread position: 196-566
Cow position: chr13:60219369-60219737 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 77

Conread position: 197-569
Cow position: chr13:20977610-20977230 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 253
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 16

Conread position: 198-565
Cow position: chr13:46459364-46458997 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 104

Conread position: 202-569
Cow position: chr13:1882232-1881863 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 106

Conread position: 249-566
Cow position: chr13:49514079-49514394 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 175

Conread position: 282-569
Cow position: chr13:48334208-48334487 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 83, 31

Conread position: 313-569
Cow position: chr13:1636599-1636346 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 15

Conread position: 356-566
Cow position: chr13:2559468-2559265 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 62

Show alignments to all cow chromosomes.