Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-112 |
| Cow position: | chr14:24785684-24785571 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-112 |
| Cow position: | chr14:42153378-42153491 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-116 |
| Cow position: | chr14:47672855-47672971 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 1-131 |
| Cow position: | chr14:16761584-16761718 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-184 |
| Cow position: | chr14:16749659-16749836 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 87 |
| Conread position: | 1-189 |
| Cow position: | chr14:18350831-18351012 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 111 |
| Conread position: | 1-190 |
| Cow position: | chr14:27077003-27076820 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 1-190 |
| Cow position: | chr14:38673894-38674076 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 1-193 |
| Cow position: | chr14:25073151-25072956 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 1-195 |
| Cow position: | chr14:41302804-41302994 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 1-197 |
| Cow position: | chr14:20481817-20482005 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-197 |
| Cow position: | chr14:36709150-36708947 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 1-200 |
| Cow position: | chr14:10078294-10078098 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 1-200 |
| Cow position: | chr14:27044746-27044946 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 1-200 |
| Cow position: | chr14:39422856-39423051 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 1-203 |
| Cow position: | chr14:25779128-25778937 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 97 |
| Conread position: | 1-205 |
| Cow position: | chr14:15491182-15490963 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-205 |
| Cow position: | chr14:42439883-42440082 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 1-206 |
| Cow position: | chr14:39926234-39926019 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 155 |
| Conread position: | 1-207 |
| Cow position: | chr14:20071097-20070899 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 1-208 |
| Cow position: | chr14:33828146-33827943 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-209 |
| Cow position: | chr14:37883890-37884097 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 30, 171 |
| Conread position: | 1-211 |
| Cow position: | chr14:37436684-37436891 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 1-212 |
| Cow position: | chr14:45577066-45577284 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-213 |
| Cow position: | chr14:18306230-18306023 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 1-214 |
| Cow position: | chr14:34199817-34200030 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 30, 76 |
| Conread position: | 1-215 |
| Cow position: | chr14:12033215-12033417 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 198, 28 |
| Conread position: | 1-216 |
| Cow position: | chr14:5639354-5639576 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 16 |
| Conread position: | 1-225 |
| Cow position: | chr14:38285943-38286167 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-236 |
| Cow position: | chr14:6226599-6226831 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 2-147 |
| Cow position: | chr14:42437050-42436903 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 2-199 |
| Cow position: | chr14:22583174-22582969 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 2-200 |
| Cow position: | chr14:30260793-30260594 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 109 |
| Conread position: | 2-203 |
| Cow position: | chr14:42330380-42330187 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 2-204 |
| Cow position: | chr14:20361945-20362139 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 193, 18 |
| Conread position: | 2-207 |
| Cow position: | chr14:18763413-18763627 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 2-215 |
| Cow position: | chr14:29631956-29631732 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 2-246 |
| Cow position: | chr14:44152951-44153190 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 107 |
| Conread position: | 3-134 |
| Cow position: | chr14:42276647-42276512 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 3-191 |
| Cow position: | chr14:26148691-26148878 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 3-202 |
| Cow position: | chr14:22997553-22997755 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 3-203 |
| Cow position: | chr14:34331302-34331505 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-205 |
| Cow position: | chr14:25290835-25290647 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-211 |
| Cow position: | chr14:34983894-34983680 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 149 |
| Conread position: | 3-234 |
| Cow position: | chr14:24981479-24981262 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 197, 18 |
| Conread position: | 3-257 |
| Cow position: | chr14:22941704-22941954 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 27, 102 |
| Conread position: | 4-140 |
| Cow position: | chr14:41267709-41267846 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 107 |
| Conread position: | 4-212 |
| Cow position: | chr14:47200102-47200303 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 8, 89 |
| Conread position: | 6-200 |
| Cow position: | chr14:9769935-9770126 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 10-200 |
| Cow position: | chr14:9029630-9029826 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 15-143 |
| Cow position: | chr14:6384464-6384590 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 15, 85 |
| Conread position: | 19-205 |
| Cow position: | chr14:48762396-48762207 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 27-247 |
| Cow position: | chr14:27312411-27312185 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 85, 174 |
| Conread position: | 42-205 |
| Cow position: | chr14:37109788-37109953 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 51-210 |
| Cow position: | chr14:7481630-7481471 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 55-206 |
| Cow position: | chr14:23038747-23038894 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 76-366 |
| Cow position: | chr14:33680088-33680377 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 98-200 |
| Cow position: | chr14:17238249-17238147 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 197-569 |
| Cow position: | chr14:40736888-40737259 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 198-570 |
| Cow position: | chr14:17771031-17770662 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 202-374 |
| Cow position: | chr14:23916718-23916889 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 150 |
| Conread position: | 209-563 |
| Cow position: | chr14:43793123-43792766 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 223 |
| Conread position: | 212-569 |
| Cow position: | chr14:39301627-39301979 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 144 |
| Conread position: | 220-566 |
| Cow position: | chr14:28008551-28008210 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 235-569 |
| Cow position: | chr14:4991989-4991658 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 128, 26 |
| Conread position: | 237-563 |
| Cow position: | chr14:23728095-23728430 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 25, 232 |
| Conread position: | 247-569 |
| Cow position: | chr14:23230366-23230687 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 122, 166 |
| Conread position: | 262-569 |
| Cow position: | chr14:35935782-35936088 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 98, 157 |
| Conread position: | 365-569 |
| Cow position: | chr14:40246510-40246310 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 59 |
Show alignments to all cow chromosomes.