Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-110 |
| Cow position: | chr15:14176426-14176537 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-119 |
| Cow position: | chr15:20487130-20487250 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-122 |
| Cow position: | chr15:22939252-22939375 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-131 |
| Cow position: | chr15:12870791-12870925 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-133 |
| Cow position: | chr15:39316769-39316903 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-138 |
| Cow position: | chr15:10608233-10608369 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 1-160 |
| Cow position: | chr15:44280175-44280011 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-163 |
| Cow position: | chr15:33976622-33976790 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-171 |
| Cow position: | chr15:39520241-39520077 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 1-185 |
| Cow position: | chr15:21166352-21166548 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-187 |
| Cow position: | chr15:52432416-52432242 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 1-193 |
| Cow position: | chr15:17162268-17162076 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 1-193 |
| Cow position: | chr15:18776678-18776873 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-197 |
| Cow position: | chr15:23719410-23719609 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-199 |
| Cow position: | chr15:5726398-5726207 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 1-199 |
| Cow position: | chr15:21389094-21389302 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 1-200 |
| Cow position: | chr15:10335828-10335624 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 1-200 |
| Cow position: | chr15:12357690-12357498 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 1-200 |
| Cow position: | chr15:40999998-41000209 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 1-200 |
| Cow position: | chr15:51701231-51701433 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 1-201 |
| Cow position: | chr15:8549410-8549608 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 1-201 |
| Cow position: | chr15:19759134-19758936 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 87 |
| Conread position: | 1-203 |
| Cow position: | chr15:35577276-35577081 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 1-204 |
| Cow position: | chr15:14281622-14281422 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 32, 115 |
| Conread position: | 1-204 |
| Cow position: | chr15:30470899-30471093 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 1-204 |
| Cow position: | chr15:42789075-42789286 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-205 |
| Cow position: | chr15:38883219-38883032 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-205 |
| Cow position: | chr15:42190518-42190325 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 1-208 |
| Cow position: | chr15:10431886-10431667 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-208 |
| Cow position: | chr15:29604627-29604840 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 1-208 |
| Cow position: | chr15:29793120-29793321 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 115 |
| Conread position: | 1-208 |
| Cow position: | chr15:50660697-50660484 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-212 |
| Cow position: | chr15:6427559-6427767 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 1-212 |
| Cow position: | chr15:50333053-50332852 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 1-225 |
| Cow position: | chr15:21941773-21941982 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 97 |
| Conread position: | 1-226 |
| Cow position: | chr15:275726-275508 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 28 |
| Conread position: | 2-164 |
| Cow position: | chr15:31025065-31024903 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 106 |
| Conread position: | 2-174 |
| Cow position: | chr15:52804589-52804764 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 28 |
| Conread position: | 2-201 |
| Cow position: | chr15:8997370-8997180 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 28, 100 |
| Conread position: | 2-205 |
| Cow position: | chr15:5523026-5522833 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 2-208 |
| Cow position: | chr15:12723164-12722967 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 133 |
| Conread position: | 3-148 |
| Cow position: | chr15:14261186-14261333 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-205 |
| Cow position: | chr15:5683216-5683023 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 3-208 |
| Cow position: | chr15:2141232-2141438 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 191 |
| Conread position: | 3-208 |
| Cow position: | chr15:5072013-5072217 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 3-230 |
| Cow position: | chr15:15154371-15154160 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 28, 70 |
| Conread position: | 3-236 |
| Cow position: | chr15:43750553-43750319 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 4-156 |
| Cow position: | chr15:16911595-16911741 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 145, 25 |
| Conread position: | 4-211 |
| Cow position: | chr15:21520221-21520021 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 5-188 |
| Cow position: | chr15:22984645-22984471 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 5-188 |
| Cow position: | chr15:34207118-34207299 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 133 |
| Conread position: | 5-208 |
| Cow position: | chr15:22871682-22871484 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 6-200 |
| Cow position: | chr15:28788283-28788080 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 6-206 |
| Cow position: | chr15:20950325-20950137 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 12-202 |
| Cow position: | chr15:53116564-53116379 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 19, 90 |
| Conread position: | 13-212 |
| Cow position: | chr15:36713952-36714152 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 15-197 |
| Cow position: | chr15:4509743-4509924 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 92, 31 |
| Conread position: | 15-197 |
| Cow position: | chr15:21803598-21803771 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 15-197 |
| Cow position: | chr15:45584792-45584616 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 102 |
| Conread position: | 17-226 |
| Cow position: | chr15:17353589-17353798 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 102 |
| Conread position: | 29-197 |
| Cow position: | chr15:36849219-36849060 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 98-192 |
| Cow position: | chr15:13251063-13250969 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 179-538 |
| Cow position: | chr15:3583311-3582944 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 110 |
| Conread position: | 193-570 |
| Cow position: | chr15:7553763-7554154 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 346 |
| Conread position: | 194-567 |
| Cow position: | chr15:23561171-23561550 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 233 |
| Conread position: | 196-566 |
| Cow position: | chr15:22138932-22138565 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 36, 216 |
| Conread position: | 198-570 |
| Cow position: | chr15:5913443-5913067 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 233 |
| Conread position: | 200-565 |
| Cow position: | chr15:45112380-45112009 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 261 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 34, 133 |
| Conread position: | 202-569 |
| Cow position: | chr15:13388180-13387813 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 226 |
| Conread position: | 202-569 |
| Cow position: | chr15:15157619-15157265 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 264 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 31, 90 |
| Conread position: | 209-543 |
| Cow position: | chr15:3833038-3832709 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 20, 169 |
| Conread position: | 220-564 |
| Cow position: | chr15:11289873-11289536 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 431-570 |
| Cow position: | chr15:44253266-44253131 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.