Cow genome map

Conread name: rpigcf0_003029.y1

Conread position: 1-109
Cow position: chr16:21317576-21317466 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 1-111
Cow position: chr16:42242100-42241989 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 45

Conread position: 1-128
Cow position: chr16:23955815-23955687 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 124

Conread position: 1-140
Cow position: chr16:29095938-29096083 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 1-143
Cow position: chr16:7499067-7499213 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 1-162
Cow position: chr16:7549985-7550151 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 29, 52

Conread position: 1-162
Cow position: chr16:8933408-8933250 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 1-164
Cow position: chr16:43105498-43105339 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 38

Conread position: 1-171
Cow position: chr16:9500539-9500714 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 29, 145

Conread position: 1-171
Cow position: chr16:15960273-15960109 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 32, 116

Conread position: 1-185
Cow position: chr16:51610817-51610641 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 29, 100

Conread position: 1-193
Cow position: chr16:15905233-15905052 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 29, 99

Conread position: 1-199
Cow position: chr16:9280100-9279906 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 116

Conread position: 1-200
Cow position: chr16:11390268-11390075 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 107

Conread position: 1-200
Cow position: chr16:13611437-13611240 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 30, 100

Conread position: 1-200
Cow position: chr16:19003516-19003314 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 29, 0

Conread position: 1-200
Cow position: chr16:45046856-45047047 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 15

Conread position: 1-200
Cow position: chr16:47304108-47303913 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 79

Conread position: 1-202
Cow position: chr16:21761953-21761747 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 29, 90

Conread position: 1-203
Cow position: chr16:7155654-7155432 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 1-203
Cow position: chr16:17626946-17627153 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 29, 48

Conread position: 1-204
Cow position: chr16:4736567-4736359 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 47

Conread position: 1-204
Cow position: chr16:33752750-33752965 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 29, 168

Conread position: 1-204
Cow position: chr16:52706059-52705843 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 29, 0

Conread position: 1-204
Cow position: chr16:53614113-53614328 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 29, 0

Conread position: 1-208
Cow position: chr16:7611880-7612088 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 203

Conread position: 1-208
Cow position: chr16:8953662-8953467 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 1-208
Cow position: chr16:24403411-24403201 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 30, 5

Conread position: 1-208
Cow position: chr16:33869748-33869543 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 106

Conread position: 1-210
Cow position: chr16:12091646-12091443 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 29, 92

Conread position: 1-211
Cow position: chr16:55592582-55592803 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 1-215
Cow position: chr16:12454771-12454558 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 29, 16

Conread position: 1-215
Cow position: chr16:26030867-26030660 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 67

Conread position: 1-225
Cow position: chr16:29026225-29026437 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 28, 0

Conread position: 1-256
Cow position: chr16:51239203-51238956 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 176
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 236, 23

Conread position: 2-180
Cow position: chr16:54734257-54734428 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 29, 58

Conread position: 2-197
Cow position: chr16:17142952-17143134 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 98

Conread position: 2-200
Cow position: chr16:11923010-11922806 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 28, 0

Conread position: 2-200
Cow position: chr16:38905216-38905025 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 28, 88

Conread position: 2-208
Cow position: chr16:22867873-22867668 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 143
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 102

Conread position: 2-209
Cow position: chr16:47632877-47633081 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 78

Conread position: 2-215
Cow position: chr16:14006101-14005889 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 126

Conread position: 2-215
Cow position: chr16:15203351-15203144 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 28, 105

Conread position: 2-217
Cow position: chr16:52224324-52224103 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 28, 40

Conread position: 2-225
Cow position: chr16:11621547-11621328 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 196, 19

Conread position: 3-133
Cow position: chr16:12097660-12097790 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 114

Conread position: 3-133
Cow position: chr16:20265544-20265412 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 3-134
Cow position: chr16:496357-496224 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 74

Conread position: 3-185
Cow position: chr16:56875645-56875462 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 28, 84

Conread position: 3-200
Cow position: chr16:3114558-3114767 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 3-200
Cow position: chr16:17945540-17945741 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 27, 136

Conread position: 3-200
Cow position: chr16:56796647-56796455 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 105

Conread position: 3-204
Cow position: chr16:8273819-8273612 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 28, 0

Conread position: 3-204
Cow position: chr16:17135746-17135936 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 3-204
Cow position: chr16:56670900-56670707 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 97

Conread position: 3-205
Cow position: chr16:9973480-9973277 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 27, 115

Conread position: 3-205
Cow position: chr16:30174512-30174317 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 25, 97

Conread position: 3-208
Cow position: chr16:29608528-29608729 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 89

Conread position: 3-212
Cow position: chr16:6319222-6319439 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 3-212
Cow position: chr16:20025463-20025665 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 170, 26

Conread position: 3-215
Cow position: chr16:52389639-52389846 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 40

Conread position: 3-221
Cow position: chr16:22842038-22841827 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 27, 38

Conread position: 3-228
Cow position: chr16:46548250-46548031 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 97

Conread position: 4-115
Cow position: chr16:56579929-56580043 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 27, 64

Conread position: 4-200
Cow position: chr16:9987048-9986857 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 96

Conread position: 4-211
Cow position: chr16:48448743-48448951 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 26, 57

Conread position: 5-142
Cow position: chr16:18353937-18353799 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 107

Conread position: 5-197
Cow position: chr16:52363707-52363904 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 126, 23

Conread position: 7-189
Cow position: chr16:12281173-12280996 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 23, 92

Conread position: 8-203
Cow position: chr16:13973129-13972939 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 34, 21

Conread position: 8-569
Cow position: chr16:13791627-13792173 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 45

Conread position: 9-204
Cow position: chr16:11422326-11422519 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 7

Conread position: 11-197
Cow position: chr16:1415276-1415084 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 19, 176

Conread position: 12-185
Cow position: chr16:29060405-29060568 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 18, 88

Conread position: 12-188
Cow position: chr16:43322877-43323047 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 19, 92

Conread position: 15-193
Cow position: chr16:53089320-53089141 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 15, 66

Conread position: 17-181
Cow position: chr16:14046497-14046330 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 32

Conread position: 17-184
Cow position: chr16:23187577-23187736 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 13, 82

Conread position: 30-198
Cow position: chr16:30140977-30140812 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 44

Conread position: 30-205
Cow position: chr16:13725896-13726074 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 142
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 67, 167

Conread position: 30-215
Cow position: chr16:8795671-8795493 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 169, 69

Conread position: 37-200
Cow position: chr16:831679-831525 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 42-203
Cow position: chr16:20749252-20749413 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 51-244
Cow position: chr16:31159292-31159105 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 185, 65

Conread position: 65-208
Cow position: chr16:9933224-9933367 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 73, 34

Conread position: 74-370
Cow position: chr16:43844291-43843993 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 202
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 10, 120

Conread position: 86-205
Cow position: chr16:20025609-20025729 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 37, 72

Conread position: 98-208
Cow position: chr16:7550108-7550219 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 127-315
Cow position: chr16:12634616-12634817 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 75, 0

Conread position: 209-563
Cow position: chr16:15094376-15094019 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 114

Conread position: 328-569
Cow position: chr16:16057757-16057512 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 168
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 133

Show alignments to all cow chromosomes.