Cow genome map

Conread name: rpigcf0_003029.y1

Conread position: 1-113
Cow position: chr17:25122187-25122073 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 1-117
Cow position: chr17:11832058-11831940 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 1-133
Cow position: chr17:34751348-34751215 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 7

Conread position: 1-135
Cow position: chr17:21922577-21922443 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 29, 99

Conread position: 1-141
Cow position: chr17:2275527-2275672 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 1-148
Cow position: chr17:5743234-5743083 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 1-169
Cow position: chr17:28814436-28814256 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 1-181
Cow position: chr17:37430448-37430261 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 179

Conread position: 1-182
Cow position: chr17:3291129-3291311 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 114, 0

Conread position: 1-185
Cow position: chr17:21335507-21335327 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 18, 100

Conread position: 1-189
Cow position: chr17:10431921-10431736 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 104

Conread position: 1-189
Cow position: chr17:11224161-11224338 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 1-192
Cow position: chr17:7137036-7137235 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 29, 146

Conread position: 1-193
Cow position: chr17:21788602-21788412 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 128

Conread position: 1-197
Cow position: chr17:4472477-4472277 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 31, 0

Conread position: 1-199
Cow position: chr17:5719928-5720136 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 1-199
Cow position: chr17:26231011-26231203 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 29, 100

Conread position: 1-200
Cow position: chr17:10508377-10508195 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 92

Conread position: 1-200
Cow position: chr17:15340695-15340486 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 179

Conread position: 1-203
Cow position: chr17:9078164-9077971 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 30, 98

Conread position: 1-203
Cow position: chr17:25141602-25141820 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 87

Conread position: 1-204
Cow position: chr17:15702413-15702622 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 30, 0

Conread position: 1-204
Cow position: chr17:22074441-22074234 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 29, 153

Conread position: 1-204
Cow position: chr17:25491004-25490798 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 0

Conread position: 1-204
Cow position: chr17:40331824-40332023 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 141
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 198, 28

Conread position: 1-204
Cow position: chr17:42697351-42697571 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 1-205
Cow position: chr17:25139320-25139519 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 29, 95

Conread position: 1-205
Cow position: chr17:39715217-39715430 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 29, 48

Conread position: 1-207
Cow position: chr17:20306383-20306580 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 197, 31

Conread position: 1-207
Cow position: chr17:21680839-21681039 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 1-208
Cow position: chr17:21325389-21325592 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 25, 99

Conread position: 1-208
Cow position: chr17:32138367-32138169 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 29, 99

Conread position: 1-215
Cow position: chr17:9713285-9713067 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 29, 0

Conread position: 1-216
Cow position: chr17:20856484-20856261 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 29, 134

Conread position: 1-216
Cow position: chr17:20874453-20874660 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 29, 98

Conread position: 1-229
Cow position: chr17:15216030-15215792 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 144

Conread position: 1-236
Cow position: chr17:17410350-17410573 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 30, 116

Conread position: 1-249
Cow position: chr17:19898947-19899185 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 29, 104

Conread position: 2-194
Cow position: chr17:6848855-6849059 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 100, 27

Conread position: 2-201
Cow position: chr17:32553995-32553810 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 28, 47

Conread position: 2-208
Cow position: chr17:21298501-21298712 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 28, 143

Conread position: 2-215
Cow position: chr17:27058499-27058295 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 30, 100

Conread position: 3-122
Cow position: chr17:27202987-27202866 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 3-191
Cow position: chr17:968943-969140 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 30, 0

Conread position: 3-205
Cow position: chr17:37816134-37815946 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 28, 75

Conread position: 3-208
Cow position: chr17:25193468-25193247 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 3-211
Cow position: chr17:3067800-3067585 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 173

Conread position: 3-230
Cow position: chr17:8823371-8823590 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 97

Conread position: 3-241
Cow position: chr17:5900428-5900660 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 42

Conread position: 4-208
Cow position: chr17:21738814-21738618 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 26, 113

Conread position: 5-200
Cow position: chr17:9487354-9487558 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 5-200
Cow position: chr17:11921104-11920923 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 44

Conread position: 5-208
Cow position: chr17:40394069-40394267 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 25, 45

Conread position: 6-194
Cow position: chr17:6566543-6566717 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 25, 65

Conread position: 8-200
Cow position: chr17:21372556-21372747 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 22, 95

Conread position: 11-208
Cow position: chr17:26802872-26802680 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 20, 90

Conread position: 15-205
Cow position: chr17:11281029-11280847 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 92

Conread position: 16-208
Cow position: chr17:31480966-31480783 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 65

Conread position: 20-205
Cow position: chr17:5686039-5685856 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 82

Conread position: 21-162
Cow position: chr17:27613296-27613443 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 21-208
Cow position: chr17:9854053-9854229 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 73

Conread position: 33-203
Cow position: chr17:31585509-31585681 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 53, 144

Conread position: 34-203
Cow position: chr17:1364690-1364851 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 79-218
Cow position: chr17:37671635-37671771 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 86, 36

Conread position: 83-203
Cow position: chr17:41912737-41912857 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 26

Conread position: 92-205
Cow position: chr17:10234678-10234561 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 7, 27

Conread position: 98-225
Cow position: chr17:24766786-24766657 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 104, 0

Conread position: 198-553
Cow position: chr17:6081856-6082221 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 249
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 122, 229

Conread position: 202-568
Cow position: chr17:12477238-12477599 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 42

Conread position: 204-569
Cow position: chr17:20508224-20507854 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 253
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 12, 121

Conread position: 213-545
Cow position: chr17:30413336-30413668 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 75

Conread position: 235-565
Cow position: chr17:20591565-20591897 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 199

Conread position: 259-566
Cow position: chr17:13237345-13237043 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 149

Conread position: 279-563
Cow position: chr17:6967575-6967296 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 88, 49

Show alignments to all cow chromosomes.