Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-108 |
| Cow position: | chr18:47410526-47410635 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-109 |
| Cow position: | chr18:50359315-50359425 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-125 |
| Cow position: | chr18:21768597-21768724 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-142 |
| Cow position: | chr18:22214471-22214614 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-143 |
| Cow position: | chr18:19273113-19272969 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-156 |
| Cow position: | chr18:49982713-49982873 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-193 |
| Cow position: | chr18:19896468-19896266 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-200 |
| Cow position: | chr18:17391010-17390825 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 1-201 |
| Cow position: | chr18:33008046-33008250 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 1-204 |
| Cow position: | chr18:10656421-10656623 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 134 |
| Conread position: | 1-204 |
| Cow position: | chr18:11672026-11672222 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 1-204 |
| Cow position: | chr18:16378906-16379112 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 29, 104 |
| Conread position: | 1-205 |
| Cow position: | chr18:1954606-1954409 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 1-205 |
| Cow position: | chr18:3158614-3158413 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 104 |
| Conread position: | 1-205 |
| Cow position: | chr18:19962160-19961966 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 38, 5 |
| Conread position: | 1-205 |
| Cow position: | chr18:22055891-22055690 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 108 |
| Conread position: | 1-205 |
| Cow position: | chr18:43555541-43555343 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 121 |
| Conread position: | 1-205 |
| Cow position: | chr18:53038813-53039019 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 94 |
| Conread position: | 1-206 |
| Cow position: | chr18:14090964-14091172 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 1-208 |
| Cow position: | chr18:51867560-51867343 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 110, 24 |
| Conread position: | 1-210 |
| Cow position: | chr18:47963608-47963815 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 1-215 |
| Cow position: | chr18:27388567-27388773 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 21, 62 |
| Conread position: | 1-215 |
| Cow position: | chr18:35950018-35950224 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 1-215 |
| Cow position: | chr18:51178745-51178532 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 1-225 |
| Cow position: | chr18:30295642-30295421 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 1-229 |
| Cow position: | chr18:49040633-49040412 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 2-116 |
| Cow position: | chr18:45897716-45897830 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 2-197 |
| Cow position: | chr18:35889115-35888926 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 2-212 |
| Cow position: | chr18:24342827-24343040 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 3-197 |
| Cow position: | chr18:50612546-50612354 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 3-200 |
| Cow position: | chr18:40759192-40759386 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 27, 63 |
| Conread position: | 3-203 |
| Cow position: | chr18:5701234-5701432 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 3-203 |
| Cow position: | chr18:23653133-23652946 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 46 |
| Conread position: | 3-204 |
| Cow position: | chr18:35692841-35693044 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 4-189 |
| Cow position: | chr18:55127940-55128141 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 4-197 |
| Cow position: | chr18:35077236-35077443 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 185 |
| Conread position: | 4-200 |
| Cow position: | chr18:31724903-31724713 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 5-183 |
| Cow position: | chr18:4673291-4673472 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 5-225 |
| Cow position: | chr18:23921715-23921505 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 25, 112 |
| Conread position: | 6-214 |
| Cow position: | chr18:33606950-33607171 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 7-200 |
| Cow position: | chr18:23162878-23163059 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 7-215 |
| Cow position: | chr18:6130063-6129854 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 121 |
| Conread position: | 8-184 |
| Cow position: | chr18:52245197-52245371 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 16, 109 |
| Conread position: | 8-208 |
| Cow position: | chr18:21878467-21878282 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 8-208 |
| Cow position: | chr18:37023560-37023361 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 8-215 |
| Cow position: | chr18:1549558-1549359 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 10-205 |
| Cow position: | chr18:39866019-39865830 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 11-192 |
| Cow position: | chr18:6399644-6399465 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 5, 91 |
| Conread position: | 15-189 |
| Cow position: | chr18:42747585-42747752 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 15-203 |
| Cow position: | chr18:18320563-18320380 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 77 |
| Conread position: | 15-208 |
| Cow position: | chr18:42978648-42978459 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 113 |
| Conread position: | 21-228 |
| Cow position: | chr18:3044445-3044652 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 28-207 |
| Cow position: | chr18:30921230-30921404 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 121, 73 |
| Conread position: | 29-208 |
| Cow position: | chr18:35454656-35454481 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 89 |
| Conread position: | 32-248 |
| Cow position: | chr18:8390206-8390423 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 83, 169 |
| Conread position: | 33-205 |
| Cow position: | chr18:19882160-19881987 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 123 |
| Conread position: | 40-192 |
| Cow position: | chr18:35478531-35478684 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 55-211 |
| Cow position: | chr18:21608812-21608664 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 69-204 |
| Cow position: | chr18:45079228-45079095 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 73-205 |
| Cow position: | chr18:51190469-51190338 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 78-200 |
| Cow position: | chr18:38438718-38438592 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 82-225 |
| Cow position: | chr18:41553318-41553176 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 84-208 |
| Cow position: | chr18:56171696-56171565 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 98-200 |
| Cow position: | chr18:40356881-40356779 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-205 |
| Cow position: | chr18:40476115-40476010 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 153-570 |
| Cow position: | chr18:21768056-21767635 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 278 |
| Conread position: | 188-544 |
| Cow position: | chr18:44486347-44486714 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 52, 239 |
| Conread position: | 199-569 |
| Cow position: | chr18:42729-42361 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 199-569 |
| Cow position: | chr18:14121318-14121690 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 151 |
| Conread position: | 201-569 |
| Cow position: | chr18:30231980-30231609 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 63 |
Show alignments to all cow chromosomes.