Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-113 |
| Cow position: | chr19:30241703-30241817 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-114 |
| Cow position: | chr19:14581368-14581482 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-114 |
| Cow position: | chr19:21176736-21176623 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 87 |
| Conread position: | 1-115 |
| Cow position: | chr19:26976062-26975947 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 1-121 |
| Cow position: | chr19:40051388-40051266 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-128 |
| Cow position: | chr19:39254440-39254311 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-135 |
| Cow position: | chr19:9733561-9733425 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 1-151 |
| Cow position: | chr19:19919456-19919304 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 1-163 |
| Cow position: | chr19:4449772-4449932 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 1-194 |
| Cow position: | chr19:42763203-42763393 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 1-197 |
| Cow position: | chr19:6079353-6079166 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-197 |
| Cow position: | chr19:43373044-43373232 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 1-198 |
| Cow position: | chr19:34620023-34619814 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 1-200 |
| Cow position: | chr19:10081080-10081275 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 1-200 |
| Cow position: | chr19:19561801-19562012 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 167 |
| Conread position: | 1-200 |
| Cow position: | chr19:21199144-21199337 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 1-202 |
| Cow position: | chr19:29627385-29627192 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 1-204 |
| Cow position: | chr19:33237179-33237396 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 30, 194 |
| Conread position: | 1-205 |
| Cow position: | chr19:4587733-4587535 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 76 |
| Conread position: | 1-207 |
| Cow position: | chr19:29972252-29972039 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 109 |
| Conread position: | 1-208 |
| Cow position: | chr19:9391146-9390949 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 100 |
| Conread position: | 1-208 |
| Cow position: | chr19:18921237-18921026 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 29, 110 |
| Conread position: | 1-210 |
| Cow position: | chr19:22970082-22969875 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 1-212 |
| Cow position: | chr19:8034341-8034139 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 195, 20 |
| Conread position: | 1-218 |
| Cow position: | chr19:4800747-4800970 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 164 |
| Conread position: | 1-224 |
| Cow position: | chr19:54915687-54915466 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 29, 194 |
| Conread position: | 1-225 |
| Cow position: | chr19:34757997-34757779 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 1-225 |
| Cow position: | chr19:46094631-46094413 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 1-240 |
| Cow position: | chr19:2327430-2327188 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 19, 129 |
| Conread position: | 2-197 |
| Cow position: | chr19:7404370-7404172 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 3-128 |
| Cow position: | chr19:39622781-39622655 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 3-140 |
| Cow position: | chr19:52356259-52356406 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-197 |
| Cow position: | chr19:22449919-22449733 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 27, 68 |
| Conread position: | 3-198 |
| Cow position: | chr19:32506110-32505923 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 110 |
| Conread position: | 3-205 |
| Cow position: | chr19:1553715-1553901 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 3-206 |
| Cow position: | chr19:19489825-19489625 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 86 |
| Conread position: | 3-208 |
| Cow position: | chr19:10287455-10287668 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-208 |
| Cow position: | chr19:51397189-51396975 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 75 |
| Conread position: | 3-221 |
| Cow position: | chr19:6344081-6344289 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 4-198 |
| Cow position: | chr19:13439468-13439659 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 4-205 |
| Cow position: | chr19:42236036-42236234 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 124 |
| Conread position: | 4-208 |
| Cow position: | chr19:38717340-38717138 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 4-208 |
| Cow position: | chr19:53403969-53404166 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 86 |
| Conread position: | 5-203 |
| Cow position: | chr19:17795905-17796100 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 112 |
| Conread position: | 5-217 |
| Cow position: | chr19:22167206-22167002 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 204, 24 |
| Conread position: | 6-193 |
| Cow position: | chr19:14348023-14348206 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 24, 73 |
| Conread position: | 6-208 |
| Cow position: | chr19:21605131-21605334 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 82 |
| Conread position: | 7-208 |
| Cow position: | chr19:3109884-3110075 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 40 |
| Conread position: | 7-215 |
| Cow position: | chr19:52621846-52621645 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 23, 93 |
| Conread position: | 9-200 |
| Cow position: | chr19:10114624-10114419 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 10-204 |
| Cow position: | chr19:21335585-21335381 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 10-205 |
| Cow position: | chr19:4511373-4511189 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 11-200 |
| Cow position: | chr19:13766145-13765960 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 11-208 |
| Cow position: | chr19:26269219-26269029 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 89 |
| Conread position: | 11-208 |
| Cow position: | chr19:43058540-43058734 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 12-200 |
| Cow position: | chr19:14421920-14421741 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 15-215 |
| Cow position: | chr19:38664305-38664111 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 21-173 |
| Cow position: | chr19:14906963-14907118 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 23-234 |
| Cow position: | chr19:33116879-33117088 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 65 |
| Conread position: | 29-203 |
| Cow position: | chr19:28928978-28928808 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 29-207 |
| Cow position: | chr19:53542864-53542693 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 167, 90 |
| Conread position: | 30-181 |
| Cow position: | chr19:33702318-33702168 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 114, 127 |
| Conread position: | 51-205 |
| Cow position: | chr19:52711305-52711144 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 71-215 |
| Cow position: | chr19:29471667-29471813 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 72-203 |
| Cow position: | chr19:21311133-21311261 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 100-236 |
| Cow position: | chr19:54919702-54919565 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 117-513 |
| Cow position: | chr19:6531978-6532370 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 85 |
| Conread position: | 190-564 |
| Cow position: | chr19:38397032-38396659 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 68 |
| Conread position: | 196-565 |
| Cow position: | chr19:34985672-34986038 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 264 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 35, 122 |
| Conread position: | 197-569 |
| Cow position: | chr19:33625160-33625532 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 150 |
| Conread position: | 211-566 |
| Cow position: | chr19:39987284-39986930 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 228-564 |
| Cow position: | chr19:35982385-35982715 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 308-563 |
| Cow position: | chr19:43066515-43066769 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 60, 118 |
| Conread position: | 329-569 |
| Cow position: | chr19:38545096-38545332 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 365-565 |
| Cow position: | chr19:31396461-31396265 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 129, 39 |
Show alignments to all cow chromosomes.