Cow genome map

Conread name: rpigcf0_003029.y1

Conread position: 1-111
Cow position: chr20:13652308-13652196 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 1-132
Cow position: chr20:11444137-11444273 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 98, 28

Conread position: 1-164
Cow position: chr20:40157959-40158134 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 1-181
Cow position: chr20:42451205-42451389 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 142

Conread position: 1-189
Cow position: chr20:9267045-9266870 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 30, 52

Conread position: 1-190
Cow position: chr20:10772265-10772462 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 34, 25

Conread position: 1-199
Cow position: chr20:5078686-5078876 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 29, 91

Conread position: 1-201
Cow position: chr20:33438921-33438714 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 29, 0

Conread position: 1-203
Cow position: chr20:15589102-15589308 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 30, 194

Conread position: 1-205
Cow position: chr20:7622922-7622726 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 29, 51

Conread position: 1-205
Cow position: chr20:20056426-20056209 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 1-205
Cow position: chr20:36842635-36842833 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 29, 51

Conread position: 1-208
Cow position: chr20:7709722-7709502 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 29, 0

Conread position: 1-208
Cow position: chr20:11043413-11043211 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 143, 0

Conread position: 1-208
Cow position: chr20:20739228-20739025 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 29, 128

Conread position: 1-208
Cow position: chr20:21325385-21325575 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 30, 48

Conread position: 1-208
Cow position: chr20:23870760-23870548 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 29, 207

Conread position: 1-209
Cow position: chr20:19328447-19328648 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 29, 77

Conread position: 1-209
Cow position: chr20:38514838-38515039 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 75

Conread position: 1-221
Cow position: chr20:24902234-24902011 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 148
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 1-227
Cow position: chr20:8021185-8021404 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 31, 100

Conread position: 1-231
Cow position: chr20:2822929-2823152 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 30, 107

Conread position: 1-234
Cow position: chr20:12995946-12995719 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 29, 46

Conread position: 1-287
Cow position: chr20:38670809-38671098 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 189
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 29, 91

Conread position: 2-137
Cow position: chr20:39728510-39728649 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 54

Conread position: 2-157
Cow position: chr20:41274838-41274676 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 2-199
Cow position: chr20:30027409-30027614 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 10

Conread position: 2-200
Cow position: chr20:9923628-9923832 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 28, 15

Conread position: 2-210
Cow position: chr20:15846815-15847032 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 183

Conread position: 2-211
Cow position: chr20:36779669-36779467 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 29, 46

Conread position: 3-117
Cow position: chr20:19751368-19751485 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 3-132
Cow position: chr20:17846020-17846151 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 116

Conread position: 3-169
Cow position: chr20:23064769-23064604 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 94, 18

Conread position: 3-200
Cow position: chr20:6890775-6890984 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 3-200
Cow position: chr20:23936123-23935937 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 58

Conread position: 3-204
Cow position: chr20:580859-580652 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 3-204
Cow position: chr20:15760512-15760323 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 46

Conread position: 3-208
Cow position: chr20:5827001-5827213 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 3-215
Cow position: chr20:38551433-38551633 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 4-210
Cow position: chr20:21714818-21715041 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 6-123
Cow position: chr20:15515376-15515257 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 7-208
Cow position: chr20:15547255-15547466 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 8-203
Cow position: chr20:37229018-37228823 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 22, 141

Conread position: 10-212
Cow position: chr20:16977776-16977584 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 20, 77

Conread position: 12-205
Cow position: chr20:3588707-3588906 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 126

Conread position: 15-225
Cow position: chr20:36633886-36634099 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 170

Conread position: 20-193
Cow position: chr20:26790533-26790366 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 10, 88

Conread position: 20-227
Cow position: chr20:10052812-10053013 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 10, 29

Conread position: 51-208
Cow position: chr20:15199077-15199229 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 145, 64

Conread position: 79-203
Cow position: chr20:18659200-18659077 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 83-212
Cow position: chr20:24310821-24310688 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 99-227
Cow position: chr20:2721674-2721800 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 120, 0

Conread position: 106-547
Cow position: chr20:27063231-27063663 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 289
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 18, 33

Conread position: 188-481
Cow position: chr20:25656836-25657127 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 179

Conread position: 196-569
Cow position: chr20:9007282-9006903 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 266
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 216

Conread position: 197-529
Cow position: chr20:14472896-14472569 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 238
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 41, 224

Conread position: 202-569
Cow position: chr20:7110801-7110435 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 226

Conread position: 210-565
Cow position: chr20:28141305-28141661 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 147

Conread position: 249-569
Cow position: chr20:24534084-24534410 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 116, 215

Conread position: 310-569
Cow position: chr20:12551847-12552106 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 183
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 101

Show alignments to all cow chromosomes.