Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-126 |
| Cow position: | chr21:32339660-32339533 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-128 |
| Cow position: | chr21:37361162-37361034 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 111 |
| Conread position: | 1-143 |
| Cow position: | chr21:28824146-28824002 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 81 |
| Conread position: | 1-159 |
| Cow position: | chr21:46470266-46470424 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 150, 28 |
| Conread position: | 1-163 |
| Cow position: | chr21:15279751-15279910 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-189 |
| Cow position: | chr21:11057798-11057608 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 28 |
| Conread position: | 1-189 |
| Cow position: | chr21:14228200-14228009 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 148 |
| Conread position: | 1-191 |
| Cow position: | chr21:19360096-19359907 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 127 |
| Conread position: | 1-192 |
| Cow position: | chr21:12739160-12739342 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-193 |
| Cow position: | chr21:26244994-26245185 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 173 |
| Conread position: | 1-194 |
| Cow position: | chr21:26658902-26658705 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-197 |
| Cow position: | chr21:36795683-36795883 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-198 |
| Cow position: | chr21:3400751-3400555 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 114 |
| Conread position: | 1-199 |
| Cow position: | chr21:42355710-42355902 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 116 |
| Conread position: | 1-200 |
| Cow position: | chr21:27569089-27568897 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-200 |
| Cow position: | chr21:30250121-30249915 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 98, 28 |
| Conread position: | 1-200 |
| Cow position: | chr21:41610247-41610441 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 119 |
| Conread position: | 1-202 |
| Cow position: | chr21:1764787-1764594 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 25 |
| Conread position: | 1-203 |
| Cow position: | chr21:25159251-25159458 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-203 |
| Cow position: | chr21:47363654-47363459 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 1-204 |
| Cow position: | chr21:32297439-32297242 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 1-204 |
| Cow position: | chr21:46264250-46264457 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-208 |
| Cow position: | chr21:42841517-42841315 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 31, 116 |
| Conread position: | 1-215 |
| Cow position: | chr21:40432525-40432741 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 48 |
| Conread position: | 1-215 |
| Cow position: | chr21:42131275-42131060 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 138 |
| Conread position: | 1-216 |
| Cow position: | chr21:13365423-13365643 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 1-218 |
| Cow position: | chr21:6051583-6051786 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 70 |
| Conread position: | 1-221 |
| Cow position: | chr21:46132654-46132874 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 1-230 |
| Cow position: | chr21:27744105-27744320 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 92 |
| Conread position: | 1-232 |
| Cow position: | chr21:33799-34021 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 1-249 |
| Cow position: | chr21:30980497-30980246 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-134 |
| Cow position: | chr21:40305024-40305160 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 2-135 |
| Cow position: | chr21:12200181-12200316 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 2-203 |
| Cow position: | chr21:13584980-13584787 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 86 |
| Conread position: | 2-205 |
| Cow position: | chr21:28924190-28924391 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 2-207 |
| Cow position: | chr21:39888659-39888455 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 3-149 |
| Cow position: | chr21:10538173-10538023 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-189 |
| Cow position: | chr21:8978529-8978720 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-201 |
| Cow position: | chr21:13163941-13164142 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 175 |
| Conread position: | 3-204 |
| Cow position: | chr21:30256187-30255990 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 196, 28 |
| Conread position: | 3-205 |
| Cow position: | chr21:42562712-42562916 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 111, 26 |
| Conread position: | 4-189 |
| Cow position: | chr21:28237624-28237448 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 4-197 |
| Cow position: | chr21:35569281-35569080 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 4-200 |
| Cow position: | chr21:36910014-36910213 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 162 |
| Conread position: | 4-208 |
| Cow position: | chr21:30249458-30249665 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 6-231 |
| Cow position: | chr21:41974293-41974074 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 11-205 |
| Cow position: | chr21:32272010-32272196 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 97 |
| Conread position: | 11-208 |
| Cow position: | chr21:31992918-31993124 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 24-231 |
| Cow position: | chr21:3359297-3359091 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 96, 80 |
| Conread position: | 39-200 |
| Cow position: | chr21:11251136-11251295 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 99, 134 |
| Conread position: | 82-205 |
| Cow position: | chr21:22720713-22720834 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 99-454 |
| Cow position: | chr21:32192390-32192747 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 119-570 |
| Cow position: | chr21:1765955-1765495 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 303 |
| Conread position: | 166-569 |
| Cow position: | chr21:19051181-19050783 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 179-570 |
| Cow position: | chr21:13388468-13388848 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 148 |
| Conread position: | 199-541 |
| Cow position: | chr21:36956296-36956640 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 223 |
| Conread position: | 200-569 |
| Cow position: | chr21:33307636-33307999 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 114 |
| Conread position: | 202-569 |
| Cow position: | chr21:16167500-16167133 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 193 |
| Conread position: | 202-570 |
| Cow position: | chr21:9201526-9201898 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 229 |
| Conread position: | 217-336 |
| Cow position: | chr21:21411915-21411797 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 217-569 |
| Cow position: | chr21:1717483-1717835 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 209 |
| Conread position: | 228-569 |
| Cow position: | chr21:9363670-9363334 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 18 |
Show alignments to all cow chromosomes.