Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-105 |
| Cow position: | chr22:28672158-28672263 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 1-113 |
| Cow position: | chr22:10553672-10553558 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-129 |
| Cow position: | chr22:3997768-3997896 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 1-132 |
| Cow position: | chr22:28120737-28120870 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-135 |
| Cow position: | chr22:3965199-3965335 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-148 |
| Cow position: | chr22:3950266-3950414 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-164 |
| Cow position: | chr22:13222132-13222295 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 1-164 |
| Cow position: | chr22:26122910-26123076 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-165 |
| Cow position: | chr22:23176428-23176263 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 126 |
| Conread position: | 1-178 |
| Cow position: | chr22:21215726-21215905 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-180 |
| Cow position: | chr22:28665296-28665477 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 122 |
| Conread position: | 1-190 |
| Cow position: | chr22:35533219-35533044 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-193 |
| Cow position: | chr22:14245428-14245250 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-193 |
| Cow position: | chr22:31510367-31510175 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 117 |
| Conread position: | 1-194 |
| Cow position: | chr22:44180606-44180802 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-197 |
| Cow position: | chr22:10421045-10421245 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 1-199 |
| Cow position: | chr22:34726681-34726869 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-200 |
| Cow position: | chr22:3250981-3250785 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 1-200 |
| Cow position: | chr22:6176273-6176087 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 1-200 |
| Cow position: | chr22:6494174-6494370 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 1-200 |
| Cow position: | chr22:22266321-22266517 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 1-200 |
| Cow position: | chr22:33030811-33031004 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 1-203 |
| Cow position: | chr22:14690958-14690761 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 1-203 |
| Cow position: | chr22:34104659-34104450 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 202 |
| Conread position: | 1-205 |
| Cow position: | chr22:7067458-7067655 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 104 |
| Conread position: | 1-205 |
| Cow position: | chr22:12188468-12188274 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 1-205 |
| Cow position: | chr22:12195555-12195360 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 1-205 |
| Cow position: | chr22:12914627-12914832 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 139 |
| Conread position: | 1-205 |
| Cow position: | chr22:17814246-17814469 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 1-207 |
| Cow position: | chr22:26339767-26339965 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 1-208 |
| Cow position: | chr22:10285981-10286191 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 29, 68 |
| Conread position: | 1-208 |
| Cow position: | chr22:16797835-16797630 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 1-208 |
| Cow position: | chr22:16823116-16823321 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 1-208 |
| Cow position: | chr22:26969796-26970018 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 192 |
| Conread position: | 1-211 |
| Cow position: | chr22:6326457-6326670 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 152 |
| Conread position: | 1-212 |
| Cow position: | chr22:11468388-11468608 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 105 |
| Conread position: | 1-212 |
| Cow position: | chr22:31308897-31309122 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-214 |
| Cow position: | chr22:31064416-31064624 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 34, 30 |
| Conread position: | 1-215 |
| Cow position: | chr22:10323893-10324118 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 219 |
| Conread position: | 1-215 |
| Cow position: | chr22:24063108-24063316 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 198, 30 |
| Conread position: | 1-215 |
| Cow position: | chr22:26074934-26075159 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-215 |
| Cow position: | chr22:27274687-27274479 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 29, 98 |
| Conread position: | 1-215 |
| Cow position: | chr22:34618811-34619019 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 1-216 |
| Cow position: | chr22:10752529-10752308 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-219 |
| Cow position: | chr22:1983861-1984071 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 1-220 |
| Cow position: | chr22:21530347-21530112 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-225 |
| Cow position: | chr22:16057990-16058214 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 1-229 |
| Cow position: | chr22:25237126-25236906 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 2-189 |
| Cow position: | chr22:11986891-11986696 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 27 |
| Conread position: | 2-197 |
| Cow position: | chr22:16845390-16845201 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 28, 116 |
| Conread position: | 2-200 |
| Cow position: | chr22:2623508-2623310 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 91 |
| Conread position: | 2-200 |
| Cow position: | chr22:24542376-24542559 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 2-205 |
| Cow position: | chr22:20846870-20847076 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 2-225 |
| Cow position: | chr22:27591208-27591418 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 3-148 |
| Cow position: | chr22:32895230-32895377 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 3-193 |
| Cow position: | chr22:977092-976909 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 3-194 |
| Cow position: | chr22:13878195-13878391 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 99, 26 |
| Conread position: | 3-203 |
| Cow position: | chr22:26316471-26316670 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 27, 171 |
| Conread position: | 3-205 |
| Cow position: | chr22:16251555-16251365 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-208 |
| Cow position: | chr22:16044401-16044196 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 125 |
| Conread position: | 3-215 |
| Cow position: | chr22:16621191-16621402 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 3-215 |
| Cow position: | chr22:27944093-27944304 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 3-238 |
| Cow position: | chr22:37029589-37029369 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 192, 18 |
| Conread position: | 4-247 |
| Cow position: | chr22:4535313-4535082 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 77 |
| Conread position: | 5-197 |
| Cow position: | chr22:27047396-27047204 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 5-204 |
| Cow position: | chr22:10339102-10338907 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 25, 113 |
| Conread position: | 5-215 |
| Cow position: | chr22:3239926-3240137 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 6-134 |
| Cow position: | chr22:41682410-41682280 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 7-200 |
| Cow position: | chr22:23440277-23440080 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 7-205 |
| Cow position: | chr22:14647102-14647300 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 9-208 |
| Cow position: | chr22:13841160-13841376 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 11-215 |
| Cow position: | chr22:3486755-3486553 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 106 |
| Conread position: | 15-194 |
| Cow position: | chr22:44384476-44384303 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 93 |
| Conread position: | 17-178 |
| Cow position: | chr22:13326923-13327093 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 29-199 |
| Cow position: | chr22:23695347-23695172 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 37-197 |
| Cow position: | chr22:4977783-4977625 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 71-240 |
| Cow position: | chr22:27588154-27588321 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 137, 44 |
| Conread position: | 139-570 |
| Cow position: | chr22:44798892-44798459 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 154-569 |
| Cow position: | chr22:41387854-41388253 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 11 |
| Conread position: | 196-565 |
| Cow position: | chr22:13249328-13249697 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 231 |
| Conread position: | 199-328 |
| Cow position: | chr22:25968182-25968048 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 215-521 |
| Cow position: | chr22:47777461-47777762 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 144, 127 |
| Conread position: | 228-565 |
| Cow position: | chr22:41407949-41407609 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 12, 202 |
| Conread position: | 235-566 |
| Cow position: | chr22:31417030-31417369 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 111, 192 |
| Conread position: | 360-569 |
| Cow position: | chr22:33767923-33768128 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 65 |
Show alignments to all cow chromosomes.