Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-109 |
| Cow position: | chr23:18417111-18417221 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-113 |
| Cow position: | chr23:26283743-26283855 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 1-188 |
| Cow position: | chr23:35247386-35247572 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 1-191 |
| Cow position: | chr23:21336465-21336277 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 1-193 |
| Cow position: | chr23:38503087-38502889 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 1-197 |
| Cow position: | chr23:18874396-18874205 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 1-198 |
| Cow position: | chr23:4241619-4241416 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 155, 14 |
| Conread position: | 1-199 |
| Cow position: | chr23:25864681-25864494 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 1-200 |
| Cow position: | chr23:3282103-3281909 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 1-200 |
| Cow position: | chr23:10876417-10876616 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 1-200 |
| Cow position: | chr23:13674013-13673812 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-200 |
| Cow position: | chr23:19453966-19453771 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 1-200 |
| Cow position: | chr23:22298015-22297829 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-204 |
| Cow position: | chr23:18354668-18354881 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 1-205 |
| Cow position: | chr23:3408892-3408680 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-206 |
| Cow position: | chr23:3814262-3814054 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-207 |
| Cow position: | chr23:9734429-9734627 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 1-208 |
| Cow position: | chr23:14164379-14164167 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 136 |
| Conread position: | 1-208 |
| Cow position: | chr23:17590820-17591027 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 1-208 |
| Cow position: | chr23:20604700-20604478 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 26, 123 |
| Conread position: | 1-208 |
| Cow position: | chr23:27790036-27790249 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 1-210 |
| Cow position: | chr23:11315016-11314807 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 29, 117 |
| Conread position: | 1-210 |
| Cow position: | chr23:18679152-18679357 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 1-212 |
| Cow position: | chr23:4327682-4327474 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 47 |
| Conread position: | 1-212 |
| Cow position: | chr23:12334229-12334436 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 1-214 |
| Cow position: | chr23:1760827-1760617 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 104 |
| Conread position: | 1-214 |
| Cow position: | chr23:18402271-18402048 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 182 |
| Conread position: | 1-216 |
| Cow position: | chr23:360668-360454 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 172, 97 |
| Conread position: | 1-216 |
| Cow position: | chr23:38455160-38454946 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 30, 117 |
| Conread position: | 1-225 |
| Cow position: | chr23:1767847-1768077 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-231 |
| Cow position: | chr23:13511741-13511988 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-193 |
| Cow position: | chr23:26591891-26591701 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 2-206 |
| Cow position: | chr23:37065869-37066063 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 97 |
| Conread position: | 2-208 |
| Cow position: | chr23:27030311-27030514 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 28, 90 |
| Conread position: | 2-267 |
| Cow position: | chr23:3835575-3835314 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 28, 126 |
| Conread position: | 3-148 |
| Cow position: | chr23:20435043-20434896 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 115 |
| Conread position: | 3-149 |
| Cow position: | chr23:4104419-4104566 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 138, 26 |
| Conread position: | 3-193 |
| Cow position: | chr23:25938368-25938181 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 3-200 |
| Cow position: | chr23:3244448-3244250 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 111 |
| Conread position: | 3-202 |
| Cow position: | chr23:204301-204492 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 3-205 |
| Cow position: | chr23:3431090-3431295 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-208 |
| Cow position: | chr23:20002278-20002490 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 3-211 |
| Cow position: | chr23:36018171-36018376 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 3-215 |
| Cow position: | chr23:5449724-5449934 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 3-215 |
| Cow position: | chr23:20744572-20744366 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 3-216 |
| Cow position: | chr23:1398018-1397791 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 4-148 |
| Cow position: | chr23:14739470-14739614 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 51, 103 |
| Conread position: | 4-172 |
| Cow position: | chr23:5203910-5203735 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 5-194 |
| Cow position: | chr23:344164-343983 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 6-204 |
| Cow position: | chr23:21502607-21502399 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 178 |
| Conread position: | 7-134 |
| Cow position: | chr23:4336094-4336220 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 9-200 |
| Cow position: | chr23:29972413-29972600 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 9-205 |
| Cow position: | chr23:33672899-33673096 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 16-197 |
| Cow position: | chr23:27145112-27144918 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 15, 174 |
| Conread position: | 33-201 |
| Cow position: | chr23:32095095-32094926 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 152 |
| Conread position: | 188-482 |
| Cow position: | chr23:15865873-15865579 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 48, 68 |
| Conread position: | 192-421 |
| Cow position: | chr23:1311090-1310855 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 196-566 |
| Cow position: | chr23:38560728-38560358 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 48, 85 |
| Conread position: | 235-569 |
| Cow position: | chr23:25565519-25565844 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 130, 79 |
| Conread position: | 261-571 |
| Cow position: | chr23:9393341-9393032 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 165 |
| Conread position: | 295-569 |
| Cow position: | chr23:3715159-3715428 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 111 |
| Conread position: | 329-569 |
| Cow position: | chr23:5416636-5416875 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 37, 99 |
Show alignments to all cow chromosomes.