Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-114 |
| Cow position: | chr24:32891052-32890937 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-123 |
| Cow position: | chr24:29013958-29014082 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-127 |
| Cow position: | chr24:28327087-28326960 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 1-147 |
| Cow position: | chr24:39806773-39806923 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-162 |
| Cow position: | chr24:22235459-22235623 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-164 |
| Cow position: | chr24:18333137-18332973 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 81, 29 |
| Conread position: | 1-168 |
| Cow position: | chr24:40404816-40404653 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-187 |
| Cow position: | chr24:33465626-33465434 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 88, 30 |
| Conread position: | 1-189 |
| Cow position: | chr24:18741580-18741402 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 1-193 |
| Cow position: | chr24:28042967-28043160 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 1-193 |
| Cow position: | chr24:39791533-39791730 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 1-197 |
| Cow position: | chr24:42726442-42726629 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 98 |
| Conread position: | 1-200 |
| Cow position: | chr24:15373397-15373602 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-200 |
| Cow position: | chr24:28289261-28289058 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 1-200 |
| Cow position: | chr24:28470688-28470493 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 1-200 |
| Cow position: | chr24:32739278-32739089 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 69 |
| Conread position: | 1-200 |
| Cow position: | chr24:33238273-33238080 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 1-200 |
| Cow position: | chr24:39905464-39905252 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-201 |
| Cow position: | chr24:24662139-24661944 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 147 |
| Conread position: | 1-202 |
| Cow position: | chr24:18695871-18696058 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-202 |
| Cow position: | chr24:27553087-27553277 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 1-203 |
| Cow position: | chr24:18614993-18615193 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 1-205 |
| Cow position: | chr24:32204803-32204605 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 1-208 |
| Cow position: | chr24:32818308-32818096 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 171, 28 |
| Conread position: | 1-211 |
| Cow position: | chr24:14648367-14648142 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 209 |
| Conread position: | 1-212 |
| Cow position: | chr24:18328480-18328270 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 123, 28 |
| Conread position: | 1-226 |
| Cow position: | chr24:19779360-19779140 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 1-240 |
| Cow position: | chr24:7390341-7390110 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2-208 |
| Cow position: | chr24:34556029-34556243 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 65 |
| Conread position: | 2-233 |
| Cow position: | chr24:2675308-2675544 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 69 |
| Conread position: | 3-123 |
| Cow position: | chr24:27782209-27782329 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 97 |
| Conread position: | 3-175 |
| Cow position: | chr24:37453510-37453347 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 3-204 |
| Cow position: | chr24:11119271-11119472 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 125 |
| Conread position: | 3-207 |
| Cow position: | chr24:24457256-24457062 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 81 |
| Conread position: | 3-212 |
| Cow position: | chr24:30202818-30203039 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 3-215 |
| Cow position: | chr24:16895443-16895236 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 3-221 |
| Cow position: | chr24:19623849-19624059 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 27, 97 |
| Conread position: | 4-207 |
| Cow position: | chr24:18313939-18313734 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 114 |
| Conread position: | 6-187 |
| Cow position: | chr24:34465509-34465332 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 6-200 |
| Cow position: | chr24:5683276-5683483 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 7-124 |
| Cow position: | chr24:41405892-41406011 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 8-204 |
| Cow position: | chr24:43024259-43024459 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 11-208 |
| Cow position: | chr24:6450495-6450691 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 47 |
| Conread position: | 13-198 |
| Cow position: | chr24:31822580-31822762 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 79 |
| Conread position: | 15-164 |
| Cow position: | chr24:35150524-35150680 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 15-194 |
| Cow position: | chr24:43200268-43200089 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 15, 73 |
| Conread position: | 15-200 |
| Cow position: | chr24:18390299-18390104 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 16-200 |
| Cow position: | chr24:19889959-19889783 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 16-228 |
| Cow position: | chr24:20969657-20969444 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 137 |
| Conread position: | 29-229 |
| Cow position: | chr24:10840898-10840701 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 185, 97 |
| Conread position: | 31-185 |
| Cow position: | chr24:21918173-21918022 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 34-219 |
| Cow position: | chr24:27168335-27168528 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 35-202 |
| Cow position: | chr24:37073835-37073669 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 5 |
| Conread position: | 50-200 |
| Cow position: | chr24:34533164-34533311 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 51-563 |
| Cow position: | chr24:35837388-35836854 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 374 |
| Conread position: | 76-208 |
| Cow position: | chr24:39841486-39841352 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 98-204 |
| Cow position: | chr24:16517778-16517672 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 85 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-211 |
| Cow position: | chr24:216826-216939 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 162-570 |
| Cow position: | chr24:7466774-7466370 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 80 |
| Conread position: | 198-539 |
| Cow position: | chr24:33239300-33238958 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 201-565 |
| Cow position: | chr24:10260110-10259753 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 252 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 40, 66 |
| Conread position: | 203-569 |
| Cow position: | chr24:38002479-38002113 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 231 |
Show alignments to all cow chromosomes.