Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-114 |
| Cow position: | chr27:16705191-16705076 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-116 |
| Cow position: | chr27:20812845-20812728 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-135 |
| Cow position: | chr27:6302528-6302663 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 1-184 |
| Cow position: | chr27:28038904-28039081 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 1-187 |
| Cow position: | chr27:22454835-22455022 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 29, 129 |
| Conread position: | 1-190 |
| Cow position: | chr27:6550403-6550227 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 1-190 |
| Cow position: | chr27:30489470-30489660 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 1-193 |
| Cow position: | chr27:16589762-16589958 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 28, 90 |
| Conread position: | 1-196 |
| Cow position: | chr27:28467511-28467706 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 1-197 |
| Cow position: | chr27:19546574-19546760 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-200 |
| Cow position: | chr27:815303-815092 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-200 |
| Cow position: | chr27:4720175-4720368 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-200 |
| Cow position: | chr27:27641072-27641278 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 1-200 |
| Cow position: | chr27:29991507-29991701 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 1-204 |
| Cow position: | chr27:19717855-19717652 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 29, 126 |
| Conread position: | 1-205 |
| Cow position: | chr27:6015142-6014924 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-205 |
| Cow position: | chr27:27255928-27255720 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-208 |
| Cow position: | chr27:26413314-26413526 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 199 |
| Conread position: | 1-208 |
| Cow position: | chr27:29658775-29658987 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-211 |
| Cow position: | chr27:30868800-30869002 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 1-215 |
| Cow position: | chr27:20485997-20485787 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 54 |
| Conread position: | 1-220 |
| Cow position: | chr27:18767123-18767347 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 30, 73 |
| Conread position: | 1-222 |
| Cow position: | chr27:27270602-27270833 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-225 |
| Cow position: | chr27:17918777-17919017 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-228 |
| Cow position: | chr27:28290802-28290573 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 98, 28 |
| Conread position: | 1-237 |
| Cow position: | chr27:31170124-31170350 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 199, 28 |
| Conread position: | 2-106 |
| Cow position: | chr27:18491495-18491390 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 86 |
| Conread position: | 2-208 |
| Cow position: | chr27:18752795-18752599 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 3-124 |
| Cow position: | chr27:30359345-30359222 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 3-134 |
| Cow position: | chr27:20543658-20543525 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 3-189 |
| Cow position: | chr27:28245742-28245550 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 99 |
| Conread position: | 3-194 |
| Cow position: | chr27:7731319-7731510 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 3-204 |
| Cow position: | chr27:22153797-22153593 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 27, 193 |
| Conread position: | 3-204 |
| Cow position: | chr27:30988735-30988528 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-205 |
| Cow position: | chr27:27136582-27136785 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 3-208 |
| Cow position: | chr27:237207-237002 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 3-208 |
| Cow position: | chr27:20584518-20584717 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 3-208 |
| Cow position: | chr27:29319349-29319156 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 4-215 |
| Cow position: | chr27:19823279-19823051 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 5-197 |
| Cow position: | chr27:22268165-22267981 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 102 |
| Conread position: | 5-207 |
| Cow position: | chr27:13902980-13903178 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 25, 89 |
| Conread position: | 6-197 |
| Cow position: | chr27:28541177-28541374 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 7-205 |
| Cow position: | chr27:18922899-18923106 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 9-200 |
| Cow position: | chr27:11940294-11940486 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 128 |
| Conread position: | 9-225 |
| Cow position: | chr27:20337034-20336822 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 21, 156 |
| Conread position: | 10-213 |
| Cow position: | chr27:7212782-7212987 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 118 |
| Conread position: | 12-204 |
| Cow position: | chr27:16088733-16088545 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 23-205 |
| Cow position: | chr27:22181987-22181816 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 29-219 |
| Cow position: | chr27:25000050-25000231 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 167, 67 |
| Conread position: | 39-205 |
| Cow position: | chr27:18749009-18749167 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 41-205 |
| Cow position: | chr27:30804100-30803936 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-200 |
| Cow position: | chr27:22708891-22708755 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 71-210 |
| Cow position: | chr27:2685322-2685187 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 179-517 |
| Cow position: | chr27:29860168-29860491 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 18, 62 |
| Conread position: | 193-569 |
| Cow position: | chr27:16428140-16428517 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 127 |
| Conread position: | 196-569 |
| Cow position: | chr27:23074640-23074264 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 225 |
| Conread position: | 202-570 |
| Cow position: | chr27:8429744-8430112 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 258 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 208-566 |
| Cow position: | chr27:26945567-26945203 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 25, 124 |
| Conread position: | 228-570 |
| Cow position: | chr27:30446879-30446535 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 191 |
Show alignments to all cow chromosomes.