Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-143 |
| Cow position: | chr28:8102924-8102780 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-150 |
| Cow position: | chr28:24706918-24707066 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 1-156 |
| Cow position: | chr28:6971327-6971172 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 1-172 |
| Cow position: | chr28:25195725-25195897 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 1-189 |
| Cow position: | chr28:20013456-20013644 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 30, 125 |
| Conread position: | 1-195 |
| Cow position: | chr28:6053292-6053482 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 1-197 |
| Cow position: | chr28:25806594-25806797 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 87 |
| Conread position: | 1-200 |
| Cow position: | chr28:2960809-2960613 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 145 |
| Conread position: | 1-200 |
| Cow position: | chr28:19024454-19024653 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 29, 128 |
| Conread position: | 1-201 |
| Cow position: | chr28:18770105-18770291 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-203 |
| Cow position: | chr28:3011248-3011061 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-205 |
| Cow position: | chr28:5552694-5552501 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 29, 98 |
| Conread position: | 1-205 |
| Cow position: | chr28:7372101-7371902 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 1-205 |
| Cow position: | chr28:12964591-12964790 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-205 |
| Cow position: | chr28:27161305-27161108 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 1-207 |
| Cow position: | chr28:29434407-29434198 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 205 |
| Conread position: | 1-208 |
| Cow position: | chr28:20759680-20759481 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-208 |
| Cow position: | chr28:26220279-26220491 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 1-211 |
| Cow position: | chr28:5366102-5365886 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 1-214 |
| Cow position: | chr28:33052057-33052276 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 14, 88 |
| Conread position: | 1-215 |
| Cow position: | chr28:2752473-2752258 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 1-215 |
| Cow position: | chr28:9418945-9418729 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 29, 134 |
| Conread position: | 1-216 |
| Cow position: | chr28:659274-659068 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 29, 98 |
| Conread position: | 1-236 |
| Cow position: | chr28:4873324-4873088 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 17, 204 |
| Conread position: | 1-267 |
| Cow position: | chr28:5152622-5152883 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 30, 118 |
| Conread position: | 2-185 |
| Cow position: | chr28:5245378-5245547 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 2-188 |
| Cow position: | chr28:26743648-26743822 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 28, 98 |
| Conread position: | 2-204 |
| Cow position: | chr28:5144499-5144307 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 103 |
| Conread position: | 3-173 |
| Cow position: | chr28:2899012-2899174 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 104 |
| Conread position: | 3-200 |
| Cow position: | chr28:5236581-5236392 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 3-204 |
| Cow position: | chr28:8898067-8898261 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 77 |
| Conread position: | 3-205 |
| Cow position: | chr28:5867744-5867948 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 171 |
| Conread position: | 3-230 |
| Cow position: | chr28:7388746-7388507 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 4-225 |
| Cow position: | chr28:2743105-2743343 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 6-148 |
| Cow position: | chr28:8258850-8258996 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 10-189 |
| Cow position: | chr28:26269416-26269591 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 107 |
| Conread position: | 12-193 |
| Cow position: | chr28:8100035-8099849 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 83, 9 |
| Conread position: | 18-200 |
| Cow position: | chr28:25518727-25518553 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 19-204 |
| Cow position: | chr28:23641226-23641033 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 11, 185 |
| Conread position: | 23-208 |
| Cow position: | chr28:11115129-11115320 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 7, 105 |
| Conread position: | 189-521 |
| Cow position: | chr28:20035998-20036319 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 175, 167 |
| Conread position: | 192-569 |
| Cow position: | chr28:1778057-1778432 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 66 |
| Conread position: | 235-571 |
| Cow position: | chr28:1550416-1550748 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 93, 17 |
| Conread position: | 306-567 |
| Cow position: | chr28:7344807-7345062 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 323-566 |
| Cow position: | chr28:11380653-11380419 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 17 |
Show alignments to all cow chromosomes.