Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-148 |
| Cow position: | chr29:32301765-32301918 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-164 |
| Cow position: | chr29:22519113-22518951 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 1-185 |
| Cow position: | chr29:33393692-33393870 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 107 |
| Conread position: | 1-189 |
| Cow position: | chr29:29324406-29324234 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-190 |
| Cow position: | chr29:3590479-3590678 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 1-194 |
| Cow position: | chr29:11527775-11527579 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 113, 28 |
| Conread position: | 1-197 |
| Cow position: | chr29:16365871-16365658 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-199 |
| Cow position: | chr29:6844619-6844414 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-200 |
| Cow position: | chr29:11562627-11562823 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 1-200 |
| Cow position: | chr29:19125336-19125527 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 1-200 |
| Cow position: | chr29:24252252-24252464 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 86, 28 |
| Conread position: | 1-200 |
| Cow position: | chr29:40096982-40097178 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 123, 25 |
| Conread position: | 1-201 |
| Cow position: | chr29:12783946-12783757 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-201 |
| Cow position: | chr29:35737313-35737119 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 1-203 |
| Cow position: | chr29:38580994-38581192 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 1-205 |
| Cow position: | chr29:8926447-8926248 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 116 |
| Conread position: | 1-205 |
| Cow position: | chr29:17297150-17297340 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 1-205 |
| Cow position: | chr29:23220485-23220287 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-205 |
| Cow position: | chr29:29940654-29940870 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-205 |
| Cow position: | chr29:39329589-39329381 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 142 |
| Conread position: | 1-208 |
| Cow position: | chr29:5995080-5994884 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 1-208 |
| Cow position: | chr29:28734122-28733906 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 1-209 |
| Cow position: | chr29:40994876-40994671 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 1-210 |
| Cow position: | chr29:40299006-40298789 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-215 |
| Cow position: | chr29:17022164-17022395 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-218 |
| Cow position: | chr29:22175695-22175904 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 121 |
| Conread position: | 1-225 |
| Cow position: | chr29:11647108-11647338 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-225 |
| Cow position: | chr29:23155240-23155457 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 2-198 |
| Cow position: | chr29:7954952-7954769 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 2-204 |
| Cow position: | chr29:28948989-28949187 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 104 |
| Conread position: | 2-205 |
| Cow position: | chr29:30188336-30188129 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 2-226 |
| Cow position: | chr29:13373312-13373544 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-200 |
| Cow position: | chr29:32799695-32799506 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 99 |
| Conread position: | 3-205 |
| Cow position: | chr29:749889-749689 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 3-215 |
| Cow position: | chr29:25333443-25333230 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 3-221 |
| Cow position: | chr29:11042448-11042661 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 63 |
| Conread position: | 4-200 |
| Cow position: | chr29:27042062-27042251 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 164 |
| Conread position: | 5-190 |
| Cow position: | chr29:34760399-34760214 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 25, 123 |
| Conread position: | 5-200 |
| Cow position: | chr29:8798997-8798815 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 25, 87 |
| Conread position: | 5-200 |
| Cow position: | chr29:20579029-20579226 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 5-210 |
| Cow position: | chr29:18579821-18579612 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 25, 148 |
| Conread position: | 5-216 |
| Cow position: | chr29:13028458-13028664 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 25, 102 |
| Conread position: | 7-200 |
| Cow position: | chr29:26631061-26631246 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 23, 90 |
| Conread position: | 7-204 |
| Cow position: | chr29:35071064-35070871 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 109 |
| Conread position: | 9-208 |
| Cow position: | chr29:16195862-16196058 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 10-194 |
| Cow position: | chr29:28840179-28840364 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 20, 118 |
| Conread position: | 15-198 |
| Cow position: | chr29:42771665-42771848 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 15-215 |
| Cow position: | chr29:35630399-35630199 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 152, 54 |
| Conread position: | 29-205 |
| Cow position: | chr29:30367022-30366853 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 30-200 |
| Cow position: | chr29:17301806-17301968 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 54-257 |
| Cow position: | chr29:34600798-34600597 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 177, 45 |
| Conread position: | 98-205 |
| Cow position: | chr29:2623385-2623278 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-215 |
| Cow position: | chr29:32301908-32302025 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 104-200 |
| Cow position: | chr29:2720954-2720858 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 170-513 |
| Cow position: | chr29:13027684-13028025 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 196-563 |
| Cow position: | chr29:34734906-34734541 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 194, 60 |
| Conread position: | 199-454 |
| Cow position: | chr29:24778201-24777952 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 199-566 |
| Cow position: | chr29:13652559-13652927 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 231 |
| Conread position: | 202-563 |
| Cow position: | chr29:19852663-19852303 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 27, 209 |
| Conread position: | 202-567 |
| Cow position: | chr29:30106347-30105984 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 35 |
| Conread position: | 202-569 |
| Cow position: | chr29:38247478-38247106 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 229 |
| Conread position: | 215-569 |
| Cow position: | chr29:4755727-4755383 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 235-569 |
| Cow position: | chr29:4057832-4058152 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 167, 80 |
| Conread position: | 258-564 |
| Cow position: | chr29:16662388-16662683 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 146, 111 |
Show alignments to all cow chromosomes.