Cow genome map

Conread name: rpigcf0_003029.y1

Conread position: 1-120
Cow position: chr4:59377918-59378039 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 1-122
Cow position: chr4:65650125-65650005 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 97

Conread position: 1-129
Cow position: chr4:44782384-44782515 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 110
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 29, 7

Conread position: 1-135
Cow position: chr4:19098481-19098617 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 29, 0

Conread position: 1-192
Cow position: chr4:63349476-63349293 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 48

Conread position: 1-192
Cow position: chr4:65265297-65265106 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 149
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 30, 116

Conread position: 1-193
Cow position: chr4:21874811-21875018 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 164
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 30, 0

Conread position: 1-194
Cow position: chr4:48381390-48381574 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 1-197
Cow position: chr4:15462240-15462040 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 158
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 6, 20

Conread position: 1-197
Cow position: chr4:19102873-19102689 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 116

Conread position: 1-197
Cow position: chr4:27691237-27691434 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 29, 66

Conread position: 1-197
Cow position: chr4:64040124-64040316 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 87

Conread position: 1-198
Cow position: chr4:48902616-48902424 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 116

Conread position: 1-199
Cow position: chr4:27699040-27699229 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 29, 100

Conread position: 1-200
Cow position: chr4:12901549-12901347 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 135

Conread position: 1-200
Cow position: chr4:19431687-19431500 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 86

Conread position: 1-200
Cow position: chr4:46668985-46669173 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 91

Conread position: 1-203
Cow position: chr4:23807958-23808152 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 106

Conread position: 1-203
Cow position: chr4:23809809-23809609 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 93

Conread position: 1-204
Cow position: chr4:10851441-10851226 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 1-204
Cow position: chr4:16814391-16814586 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 29, 80

Conread position: 1-205
Cow position: chr4:43865848-43865633 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 1-205
Cow position: chr4:58389233-58389040 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 30, 94

Conread position: 1-207
Cow position: chr4:54937090-54937291 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 29, 103

Conread position: 1-208
Cow position: chr4:13608464-13608662 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 12, 59

Conread position: 1-208
Cow position: chr4:46435333-46435532 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 116

Conread position: 1-208
Cow position: chr4:53169586-53169375 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 1-208
Cow position: chr4:65919620-65919818 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 195, 27

Conread position: 1-209
Cow position: chr4:34630907-34631106 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 29, 89

Conread position: 1-209
Cow position: chr4:39010058-39010252 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 29, 88

Conread position: 1-209
Cow position: chr4:45013157-45012954 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 1-211
Cow position: chr4:19700107-19700310 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 197, 31

Conread position: 1-212
Cow position: chr4:45636175-45636374 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 29, 116

Conread position: 1-214
Cow position: chr4:1236864-1236650 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 30, 87

Conread position: 1-215
Cow position: chr4:20142897-20142706 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 1-218
Cow position: chr4:5047137-5046926 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 29, 119

Conread position: 1-222
Cow position: chr4:61313204-61312984 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 29, 116

Conread position: 1-229
Cow position: chr4:5904499-5904729 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 101, 19

Conread position: 1-231
Cow position: chr4:13973961-13973727 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 184

Conread position: 1-237
Cow position: chr4:46656138-46656360 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 100

Conread position: 2-120
Cow position: chr4:508899-508780 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 98

Conread position: 2-135
Cow position: chr4:1881-2016 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 2-135
Cow position: chr4:32272963-32272831 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 97

Conread position: 2-189
Cow position: chr4:45775328-45775151 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 28, 98

Conread position: 2-198
Cow position: chr4:45367749-45367956 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 28, 179

Conread position: 2-205
Cow position: chr4:13871910-13872116 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 40

Conread position: 2-212
Cow position: chr4:38350190-38349989 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 99

Conread position: 2-217
Cow position: chr4:54191099-54191309 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 28, 105

Conread position: 3-135
Cow position: chr4:7729426-7729292 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 3-149
Cow position: chr4:21533085-21532935 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 27, 85

Conread position: 3-164
Cow position: chr4:46761618-46761773 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 104

Conread position: 3-185
Cow position: chr4:65805906-65806084 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 27, 114

Conread position: 3-197
Cow position: chr4:21801028-21801222 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 30, 61

Conread position: 3-200
Cow position: chr4:18095663-18095471 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 27, 97

Conread position: 3-207
Cow position: chr4:57156886-57156686 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 3-212
Cow position: chr4:45909966-45909758 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 24, 46

Conread position: 3-212
Cow position: chr4:58172904-58173117 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 28, 107

Conread position: 3-215
Cow position: chr4:27521564-27521767 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 21

Conread position: 5-189
Cow position: chr4:30845384-30845564 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 26, 103

Conread position: 5-199
Cow position: chr4:11496637-11496436 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 25, 70

Conread position: 5-200
Cow position: chr4:37675626-37675817 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 25, 72

Conread position: 5-215
Cow position: chr4:59871488-59871684 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 68

Conread position: 6-206
Cow position: chr4:7704311-7704121 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 26, 94

Conread position: 8-208
Cow position: chr4:51630798-51630997 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 22, 32

Conread position: 9-197
Cow position: chr4:57421069-57421264 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 93, 0

Conread position: 12-208
Cow position: chr4:48321502-48321306 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 18, 36

Conread position: 13-212
Cow position: chr4:19542153-19542353 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 115

Conread position: 14-208
Cow position: chr4:5132355-5132543 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 93

Conread position: 15-188
Cow position: chr4:51477575-51477396 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 16, 33

Conread position: 17-208
Cow position: chr4:19584728-19584911 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 87

Conread position: 18-223
Cow position: chr4:20315486-20315285 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 10, 102

Conread position: 29-202
Cow position: chr4:501644-501477 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 171, 86

Conread position: 30-205
Cow position: chr4:26684401-26684578 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 87, 125

Conread position: 37-209
Cow position: chr4:29236895-29236732 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 161, 61

Conread position: 51-198
Cow position: chr4:13393693-13393838 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 54-193
Cow position: chr4:45794007-45794145 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 76-212
Cow position: chr4:47029769-47029899 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 80-204
Cow position: chr4:59337379-59337503 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 91-569
Cow position: chr4:21554010-21553549 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 12

Conread position: 93-280
Cow position: chr4:45115714-45115520 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 12

Conread position: 179-570
Cow position: chr4:68107905-68107528 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 255
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 185, 23

Conread position: 188-565
Cow position: chr4:49067674-49068063 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 150

Conread position: 188-569
Cow position: chr4:46152220-46151838 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 227

Conread position: 195-569
Cow position: chr4:58833947-58833574 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 21

Conread position: 196-566
Cow position: chr4:22354172-22354542 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 226

Conread position: 199-569
Cow position: chr4:10613983-10613612 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 106

Conread position: 202-562
Cow position: chr4:27348469-27348820 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 86

Conread position: 218-569
Cow position: chr4:37955909-37955561 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 211

Conread position: 234-569
Cow position: chr4:29528009-29527679 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 226
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 79, 147

Conread position: 235-569
Cow position: chr4:66900881-66901215 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 233
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 133, 153

Conread position: 253-568
Cow position: chr4:2122065-2121760 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 218
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 291, 66

Conread position: 270-566
Cow position: chr4:46862242-46861946 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 92, 156

Conread position: 289-566
Cow position: chr4:28400041-28399767 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 72, 21

Show alignments to all cow chromosomes.