Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-120 |
| Cow position: | chr6:13367341-13367462 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 1-132 |
| Cow position: | chr6:19131486-19131619 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-135 |
| Cow position: | chr6:47799349-47799485 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-142 |
| Cow position: | chr6:55535691-55535553 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-154 |
| Cow position: | chr6:60451483-60451638 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 1-164 |
| Cow position: | chr6:21235098-21235258 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 107 |
| Conread position: | 1-165 |
| Cow position: | chr6:67305125-67305291 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 80 |
| Conread position: | 1-171 |
| Cow position: | chr6:582216-582040 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 155 |
| Conread position: | 1-185 |
| Cow position: | chr6:12091937-12091763 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 1-189 |
| Cow position: | chr6:42137061-42136884 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 1-194 |
| Cow position: | chr6:5302363-5302170 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 25, 97 |
| Conread position: | 1-199 |
| Cow position: | chr6:6401010-6401202 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-200 |
| Cow position: | chr6:139588-139388 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 1-200 |
| Cow position: | chr6:9736600-9736407 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 1-200 |
| Cow position: | chr6:37783456-37783664 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-200 |
| Cow position: | chr6:60186607-60186413 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 1-203 |
| Cow position: | chr6:7130824-7130620 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-203 |
| Cow position: | chr6:13040496-13040694 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 1-203 |
| Cow position: | chr6:67214805-67215011 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 29, 175 |
| Conread position: | 1-204 |
| Cow position: | chr6:22215414-22215220 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 1-204 |
| Cow position: | chr6:60266127-60265926 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 1-205 |
| Cow position: | chr6:6098210-6098006 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 118 |
| Conread position: | 1-205 |
| Cow position: | chr6:35702289-35702084 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 118 |
| Conread position: | 1-205 |
| Cow position: | chr6:59718853-59719054 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 1-208 |
| Cow position: | chr6:18454287-18454082 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 124, 19 |
| Conread position: | 1-208 |
| Cow position: | chr6:29853009-29852809 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 1-211 |
| Cow position: | chr6:34569463-34569665 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 1-213 |
| Cow position: | chr6:18903996-18903785 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 1-215 |
| Cow position: | chr6:24514490-24514279 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 1-215 |
| Cow position: | chr6:36643436-36643234 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 71 |
| Conread position: | 1-215 |
| Cow position: | chr6:48678663-48678873 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-225 |
| Cow position: | chr6:57550229-57550456 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 1-227 |
| Cow position: | chr6:60057599-60057375 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 81 |
| Conread position: | 1-230 |
| Cow position: | chr6:60740070-60740302 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 145 |
| Conread position: | 2-197 |
| Cow position: | chr6:36938924-36939109 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 97 |
| Conread position: | 2-201 |
| Cow position: | chr6:57299815-57300009 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 2-208 |
| Cow position: | chr6:23353607-23353802 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 2-208 |
| Cow position: | chr6:32809338-32809562 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 2-208 |
| Cow position: | chr6:38234289-38234502 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 28, 200 |
| Conread position: | 3-133 |
| Cow position: | chr6:107367-107236 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 3-135 |
| Cow position: | chr6:47676072-47676204 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 3-164 |
| Cow position: | chr6:18144255-18144412 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 127 |
| Conread position: | 3-178 |
| Cow position: | chr6:19508130-19507947 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-203 |
| Cow position: | chr6:47339298-47339084 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-210 |
| Cow position: | chr6:38441230-38441427 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 105 |
| Conread position: | 3-215 |
| Cow position: | chr6:21066825-21066595 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 27, 194 |
| Conread position: | 3-225 |
| Cow position: | chr6:67456776-67457001 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 30, 203 |
| Conread position: | 4-134 |
| Cow position: | chr6:34512763-34512893 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 27, 45 |
| Conread position: | 4-188 |
| Cow position: | chr6:51674968-51675161 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 74 |
| Conread position: | 4-189 |
| Cow position: | chr6:49096394-49096201 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 4-203 |
| Cow position: | chr6:46282945-46282751 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 4-224 |
| Cow position: | chr6:35993643-35993870 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 5-117 |
| Cow position: | chr6:54867577-54867691 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 6-197 |
| Cow position: | chr6:24781498-24781316 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 55 |
| Conread position: | 8-208 |
| Cow position: | chr6:34498801-34499005 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 100 |
| Conread position: | 9-197 |
| Cow position: | chr6:66131370-66131554 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 79 |
| Conread position: | 11-185 |
| Cow position: | chr6:60516892-60517061 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 11-200 |
| Cow position: | chr6:50882646-50882841 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 9, 168 |
| Conread position: | 11-203 |
| Cow position: | chr6:35896287-35896087 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 11-204 |
| Cow position: | chr6:3447796-3447993 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 16-181 |
| Cow position: | chr6:36516031-36516204 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 141 |
| Conread position: | 21-205 |
| Cow position: | chr6:38020749-38020920 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 32-217 |
| Cow position: | chr6:67044647-67044466 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 34-202 |
| Cow position: | chr6:17194302-17194466 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 133, 81 |
| Conread position: | 34-204 |
| Cow position: | chr6:13327084-13326911 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 51-204 |
| Cow position: | chr6:29291663-29291817 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 56-212 |
| Cow position: | chr6:21666475-21666629 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 71-197 |
| Cow position: | chr6:23235299-23235420 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 71-204 |
| Cow position: | chr6:2618085-2617951 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 24, 5 |
| Conread position: | 103-205 |
| Cow position: | chr6:56850158-56850260 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-569 |
| Cow position: | chr6:52557248-52556791 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 8 |
| Conread position: | 165-566 |
| Cow position: | chr6:48579292-48578879 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 166-565 |
| Cow position: | chr6:51879164-51879556 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 10 |
| Conread position: | 197-569 |
| Cow position: | chr6:11466603-11466236 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 95 |
| Conread position: | 198-570 |
| Cow position: | chr6:55944976-55944606 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 163, 151 |
| Conread position: | 201-528 |
| Cow position: | chr6:2582083-2582410 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 202-478 |
| Cow position: | chr6:6278253-6278524 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 202-513 |
| Cow position: | chr6:33296716-33297023 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 202-553 |
| Cow position: | chr6:10236654-10236993 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 160, 98 |
| Conread position: | 202-569 |
| Cow position: | chr6:828365-827998 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 122 |
| Conread position: | 209-539 |
| Cow position: | chr6:21832187-21831854 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 20, 216 |
| Conread position: | 250-567 |
| Cow position: | chr6:38595130-38594812 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 115, 178 |
| Conread position: | 258-570 |
| Cow position: | chr6:45279775-45279467 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 107, 31 |
| Conread position: | 323-566 |
| Cow position: | chr6:39916411-39916652 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 103 |
Show alignments to all cow chromosomes.