Cow genome map
| Conread name: | rpigcf0_003029.y1 |
| Conread position: | 1-110 |
| Cow position: | chr8:4525108-4525219 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-128 |
| Cow position: | chr8:11606353-11606483 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-130 |
| Cow position: | chr8:5884664-5884533 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-132 |
| Cow position: | chr8:45127676-45127544 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 110 |
| Conread position: | 1-135 |
| Cow position: | chr8:12795851-12795987 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-141 |
| Cow position: | chr8:61443188-61443048 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 111 |
| Conread position: | 1-143 |
| Cow position: | chr8:14109417-14109560 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 92 |
| Conread position: | 1-148 |
| Cow position: | chr8:51162508-51162359 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-188 |
| Cow position: | chr8:53965450-53965273 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 32, 99 |
| Conread position: | 1-190 |
| Cow position: | chr8:40032792-40032604 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 1-193 |
| Cow position: | chr8:3673398-3673591 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 1-197 |
| Cow position: | chr8:47461886-47462085 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-197 |
| Cow position: | chr8:60594881-60595068 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 97 |
| Conread position: | 1-200 |
| Cow position: | chr8:11927155-11927347 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 1-200 |
| Cow position: | chr8:19727474-19727662 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-200 |
| Cow position: | chr8:28210009-28210195 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 1-200 |
| Cow position: | chr8:37882372-37882574 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-200 |
| Cow position: | chr8:41905592-41905411 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-200 |
| Cow position: | chr8:41914500-41914319 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-200 |
| Cow position: | chr8:43153663-43153464 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 1-200 |
| Cow position: | chr8:49305723-49305539 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 1-203 |
| Cow position: | chr8:15182375-15182579 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 1-203 |
| Cow position: | chr8:24328828-24328635 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 1-205 |
| Cow position: | chr8:58876096-58876308 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 23, 89 |
| Conread position: | 1-207 |
| Cow position: | chr8:53251676-53251479 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 99 |
| Conread position: | 1-208 |
| Cow position: | chr8:18170989-18170783 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 1-208 |
| Cow position: | chr8:18730474-18730675 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 1-208 |
| Cow position: | chr8:28987726-28987941 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-208 |
| Cow position: | chr8:32303955-32304157 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 1-208 |
| Cow position: | chr8:42145746-42145550 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 1-208 |
| Cow position: | chr8:45232580-45232784 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-208 |
| Cow position: | chr8:45287265-45287065 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 149, 13 |
| Conread position: | 1-208 |
| Cow position: | chr8:51208809-51209009 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 1-210 |
| Cow position: | chr8:21911663-21911861 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 1-210 |
| Cow position: | chr8:26304364-26304147 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 153 |
| Conread position: | 1-211 |
| Cow position: | chr8:22756048-22756264 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 76 |
| Conread position: | 1-211 |
| Cow position: | chr8:39174216-39173987 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 219 |
| Conread position: | 1-211 |
| Cow position: | chr8:47969253-47969041 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 127 |
| Conread position: | 1-212 |
| Cow position: | chr8:50709081-50709288 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 29, 116 |
| Conread position: | 1-225 |
| Cow position: | chr8:21600473-21600687 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 1-240 |
| Cow position: | chr8:45126208-45125966 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 1-498 |
| Cow position: | chr8:44126496-44126982 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 2-190 |
| Cow position: | chr8:35555297-35555114 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 90 |
| Conread position: | 2-200 |
| Cow position: | chr8:39475560-39475749 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 97 |
| Conread position: | 2-203 |
| Cow position: | chr8:54147694-54147905 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 2-204 |
| Cow position: | chr8:42112797-42112602 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 86 |
| Conread position: | 2-234 |
| Cow position: | chr8:38860589-38860815 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 92 |
| Conread position: | 3-190 |
| Cow position: | chr8:3922687-3922496 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-194 |
| Cow position: | chr8:5546167-5546349 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 3-197 |
| Cow position: | chr8:36489898-36490100 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 171 |
| Conread position: | 3-199 |
| Cow position: | chr8:11148611-11148402 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-201 |
| Cow position: | chr8:31167078-31166882 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 107 |
| Conread position: | 3-204 |
| Cow position: | chr8:25388167-25388367 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 96 |
| Conread position: | 3-205 |
| Cow position: | chr8:36531576-36531385 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 3-205 |
| Cow position: | chr8:38780739-38780935 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 17 |
| Conread position: | 3-208 |
| Cow position: | chr8:43104262-43104065 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 196, 26 |
| Conread position: | 3-209 |
| Cow position: | chr8:21069949-21069745 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 24, 100 |
| Conread position: | 3-219 |
| Cow position: | chr8:24980728-24980940 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 3-569 |
| Cow position: | chr8:21077613-21078187 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 255 |
| Conread position: | 4-204 |
| Cow position: | chr8:46235728-46235920 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 195, 25 |
| Conread position: | 5-208 |
| Cow position: | chr8:9468375-9468585 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 6-207 |
| Cow position: | chr8:20837152-20837370 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 8-219 |
| Cow position: | chr8:4193517-4193309 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 10-198 |
| Cow position: | chr8:36465217-36465400 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 10-204 |
| Cow position: | chr8:19010801-19010610 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 97 |
| Conread position: | 13-215 |
| Cow position: | chr8:53485945-53486145 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 88 |
| Conread position: | 15-203 |
| Cow position: | chr8:35504192-35504009 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 16-189 |
| Cow position: | chr8:42998-43180 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 30-184 |
| Cow position: | chr8:21611440-21611589 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 30-200 |
| Cow position: | chr8:46191000-46190822 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 40-197 |
| Cow position: | chr8:1327443-1327598 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 98-208 |
| Cow position: | chr8:48010464-48010355 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 165-570 |
| Cow position: | chr8:44650809-44651219 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 194 |
| Conread position: | 166-326 |
| Cow position: | chr8:51452228-51452076 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 196-565 |
| Cow position: | chr8:47484655-47484284 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 196-568 |
| Cow position: | chr8:36309086-36308701 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 270 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 35, 242 |
| Conread position: | 199-480 |
| Cow position: | chr8:12719372-12719651 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 164, 191 |
| Conread position: | 202-358 |
| Cow position: | chr8:18576687-18576534 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 202-568 |
| Cow position: | chr8:39073112-39072754 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 90 |
| Conread position: | 202-569 |
| Cow position: | chr8:9984896-9985245 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 167 |
| Conread position: | 202-569 |
| Cow position: | chr8:55026256-55026617 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 35 |
| Conread position: | 218-563 |
| Cow position: | chr8:48791108-48791453 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 15, 100 |
| Conread position: | 290-569 |
| Cow position: | chr8:8135147-8134862 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 5, 104 |
| Conread position: | 344-566 |
| Cow position: | chr8:16463260-16463044 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 12 |
Show alignments to all cow chromosomes.