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Cow genome map

           
Conread name:
           
rpigcf0_003055.y1
        

               
Conread position:
               
1-388
               

               
Cow position:
               
chr11:77240949-77241358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 25
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr11:58399858-58400334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 18
               

               
Conread position:
               
2-346
               

               
Cow position:
               
chr11:78819696-78820044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 17
               

               
Conread position:
               
2-584
               

               
Cow position:
               
chr11:25792104-25791494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 17
               

               
Conread position:
               
5-558
               

               
Cow position:
               
chr11:17860562-17859981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 15
               

               
Conread position:
               
8-395
               

               
Cow position:
               
chr11:41577409-41577023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 11
               

               
Conread position:
               
8-475
               

               
Cow position:
               
chr11:7394752-7395205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
8-482
               

               
Cow position:
               
chr11:58587938-58588427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 11
               

               
Conread position:
               
8-488
               

               
Cow position:
               
chr11:42358720-42359206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 12
               

               
Conread position:
               
8-600
               

               
Cow position:
               
chr11:18509413-18508807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 11
               

               
Conread position:
               
13-558
               

               
Cow position:
               
chr11:7873762-7874312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 8
               

               
Conread position:
               
14-508
               

               
Cow position:
               
chr11:69118898-69119401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
14-555
               

               
Cow position:
               
chr11:4674838-4674275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 103
               

               
Conread position:
               
17-594
               

               
Cow position:
               
chr11:48672312-48672925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 11
               

               
Conread position:
               
18-409
               

               
Cow position:
               
chr11:83196105-83196506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 119
               

               
Conread position:
               
18-428
               

               
Cow position:
               
chr11:81174494-81174913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 148
               

               
Conread position:
               
18-558
               

               
Cow position:
               
chr11:67346040-67345487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 36
               

               
Conread position:
               
19-244
               

               
Cow position:
               
chr11:39152292-39152514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
158, 100
               

               
Conread position:
               
19-244
               

               
Cow position:
               
chr11:69074916-69075142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
163, 92
               

               
Conread position:
               
19-266
               

               
Cow position:
               
chr11:11534292-11534036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
162, 30
               

               
Conread position:
               
19-282
               

               
Cow position:
               
chr11:32067426-32067157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 109
               

               
Conread position:
               
19-386
               

               
Cow position:
               
chr11:3703925-3704290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
161, 141
               

               
Conread position:
               
19-393
               

               
Cow position:
               
chr11:68571067-68570676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 188
               

               
Conread position:
               
19-402
               

               
Cow position:
               
chr11:62979082-62979492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 188
               

               
Conread position:
               
19-410
               

               
Cow position:
               
chr11:16251651-16251234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 195
               

               
Conread position:
               
19-420
               

               
Cow position:
               
chr11:38810732-38810328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 123
               

               
Conread position:
               
19-428
               

               
Cow position:
               
chr11:10076379-10076797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 162
               

               
Conread position:
               
19-434
               

               
Cow position:
               
chr11:8339800-8339371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 191
               

               
Conread position:
               
19-460
               

               
Cow position:
               
chr11:33754314-33753848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 145
               

               
Conread position:
               
19-475
               

               
Cow position:
               
chr11:33526672-33527128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 196
               

               
Conread position:
               
19-485
               

               
Cow position:
               
chr11:18086733-18086262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 139
               

               
Conread position:
               
19-488
               

               
Cow position:
               
chr11:25386675-25387155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 216
               

               
Conread position:
               
19-496
               

               
Cow position:
               
chr11:39115107-39115590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 30
               

               
Conread position:
               
19-500
               

               
Cow position:
               
chr11:76606294-76606773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 184
               

               
Conread position:
               
19-503
               

               
Cow position:
               
chr11:53147935-53147428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 147
               

               
Conread position:
               
19-508
               

               
Cow position:
               
chr11:17831628-17831114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 95
               

               
Conread position:
               
19-508
               

               
Cow position:
               
chr11:50072582-50073046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 88
               

               
Conread position:
               
19-508
               

               
Cow position:
               
chr11:62151273-62150787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 23
               

               
Conread position:
               
19-521
               

               
Cow position:
               
chr11:8525497-8524988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 24
               

               
Conread position:
               
19-521
               

               
Cow position:
               
chr11:35579859-35580391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 109
               

               
Conread position:
               
19-521
               

               
Cow position:
               
chr11:59872531-59873053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 147
               

               
Conread position:
               
19-534
               

               
Cow position:
               
chr11:67246414-67246918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 63
               

               
Conread position:
               
19-557
               

               
Cow position:
               
chr11:40458726-40459276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 84
               

               
Conread position:
               
19-557
               

               
Cow position:
               
chr11:62710267-62709713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
123, 189
               

               
Conread position:
               
19-558
               

               
Cow position:
               
chr11:40786-41342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 85
               

               
Conread position:
               
19-558
               

               
Cow position:
               
chr11:13499622-13500182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 23
               

               
Conread position:
               
19-558
               

               
Cow position:
               
chr11:26067575-26067017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 161
               

               
Conread position:
               
19-558
               

               
Cow position:
               
chr11:30191768-30192350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 194
               

               
Conread position:
               
19-558
               

               
Cow position:
               
chr11:30708097-30708677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 158
               

               
Conread position:
               
19-558
               

               
Cow position:
               
chr11:31866204-31866751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 236
               

               
Conread position:
               
19-558
               

               
Cow position:
               
chr11:65495723-65495172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 188
               

               
Conread position:
               
19-558
               

               
Cow position:
               
chr11:77705369-77705922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 162
               

               
Conread position:
               
19-567
               

               
Cow position:
               
chr11:30639327-30638771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 134
               

               
Conread position:
               
19-576
               

               
Cow position:
               
chr11:7924980-7924415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 86
               

               
Conread position:
               
19-580
               

               
Cow position:
               
chr11:75480430-75479824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 196
               

               
Conread position:
               
19-585
               

               
Cow position:
               
chr11:11752910-11752337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 112
               

               
Conread position:
               
19-589
               

               
Cow position:
               
chr11:17890117-17889523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 55
               

               
Conread position:
               
20-424
               

               
Cow position:
               
chr11:2309478-2309898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 141
               

               
Conread position:
               
20-457
               

               
Cow position:
               
chr11:18371824-18371379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 102
               

               
Conread position:
               
20-558
               

               
Cow position:
               
chr11:15467074-15467618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 43
               

               
Conread position:
               
20-577
               

               
Cow position:
               
chr11:46746241-46746828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 42
               

               
Conread position:
               
20-589
               

               
Cow position:
               
chr11:77745658-77745043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 200
               

               
Conread position:
               
21-302
               

               
Cow position:
               
chr11:37118091-37118390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 186
               

               
Conread position:
               
21-393
               

               
Cow position:
               
chr11:47586739-47586357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 9
               

               
Conread position:
               
21-441
               

               
Cow position:
               
chr11:65430682-65431096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
146, 78
               

               
Conread position:
               
21-483
               

               
Cow position:
               
chr11:36986578-36987033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 55
               

               
Conread position:
               
21-508
               

               
Cow position:
               
chr11:77751159-77750656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 146
               

               
Conread position:
               
22-305
               

               
Cow position:
               
chr11:84774725-84775010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
160, 143
               

               
Conread position:
               
22-362
               

               
Cow position:
               
chr11:74929388-74929745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 144
               

               
Conread position:
               
22-411
               

               
Cow position:
               
chr11:18389252-18388862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 11
               

               
Conread position:
               
22-465
               

               
Cow position:
               
chr11:77767001-77766529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
22-472
               

               
Cow position:
               
chr11:27939094-27939555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 185
               

               
Conread position:
               
22-473
               

               
Cow position:
               
chr11:81931462-81931043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 102
               

               
Conread position:
               
22-487
               

               
Cow position:
               
chr11:35363104-35363567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 53
               

               
Conread position:
               
22-488
               

               
Cow position:
               
chr11:29947330-29946827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 197
               

               
Conread position:
               
22-488
               

               
Cow position:
               
chr11:70745929-70745448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 184
               

               
Conread position:
               
22-489
               

               
Cow position:
               
chr11:23128944-23128452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 93
               

               
Conread position:
               
22-492
               

               
Cow position:
               
chr11:8841135-8840653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 157
               

               
Conread position:
               
22-508
               

               
Cow position:
               
chr11:48271809-48272309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 28
               

               
Conread position:
               
22-509
               

               
Cow position:
               
chr11:43430852-43430347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 171
               

               
Conread position:
               
22-520
               

               
Cow position:
               
chr11:13040570-13040053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 199
               

               
Conread position:
               
22-556
               

               
Cow position:
               
chr11:42083091-42083623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 181
               

               
Conread position:
               
22-558
               

               
Cow position:
               
chr11:49152548-49153112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 199
               

               
Conread position:
               
22-558
               

               
Cow position:
               
chr11:53778224-53778792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 91
               

               
Conread position:
               
22-558
               

               
Cow position:
               
chr11:64029648-64029095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 144
               

               
Conread position:
               
22-563
               

               
Cow position:
               
chr11:1486262-1485683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 338
               

               
Conread position:
               
22-563
               

               
Cow position:
               
chr11:26535373-26535961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 148
               

               
Conread position:
               
22-566
               

               
Cow position:
               
chr11:43361182-43360607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 61
               

               
Conread position:
               
22-586
               

               
Cow position:
               
chr11:21852677-21852115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 180
               

               
Conread position:
               
22-589
               

               
Cow position:
               
chr11:17279049-17278481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 69
               

               
Conread position:
               
22-596
               

               
Cow position:
               
chr11:30165108-30165718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 356
               

               
Conread position:
               
22-596
               

               
Cow position:
               
chr11:77759149-77758551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 99
               

               
Conread position:
               
23-413
               

               
Cow position:
               
chr11:17113019-17112616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 185
               

               
Conread position:
               
23-424
               

               
Cow position:
               
chr11:6154024-6154433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 20
               

               
Conread position:
               
23-465
               

               
Cow position:
               
chr11:8495645-8496098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 149
               

               
Conread position:
               
23-508
               

               
Cow position:
               
chr11:7589801-7590295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 91
               

               
Conread position:
               
23-513
               

               
Cow position:
               
chr11:71168966-71168479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 73
               

               
Conread position:
               
23-521
               

               
Cow position:
               
chr11:2343892-2344382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 102
               

               
Conread position:
               
23-558
               

               
Cow position:
               
chr11:23251995-23251427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 149
               

               
Conread position:
               
23-563
               

               
Cow position:
               
chr11:34112872-34113429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 168
               

               
Conread position:
               
23-591
               

               
Cow position:
               
chr11:49211226-49210613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
23-600
               

               
Cow position:
               
chr11:55744081-55744684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 185
               

               
Conread position:
               
24-440
               

               
Cow position:
               
chr11:27386730-27386298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 183
               

               
Conread position:
               
24-595
               

               
Cow position:
               
chr11:84386027-84385429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 110
               

               
Conread position:
               
28-387
               

               
Cow position:
               
chr11:49105668-49106044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 35
               

               
Conread position:
               
28-415
               

               
Cow position:
               
chr11:58990124-58990518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 179
               

               
Conread position:
               
28-446
               

               
Cow position:
               
chr11:8827395-8827826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 61
               

               
Conread position:
               
28-475
               

               
Cow position:
               
chr11:76114267-76114718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 12
               

               
Conread position:
               
28-488
               

               
Cow position:
               
chr11:30879291-30879754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 181
               

               
Conread position:
               
28-508
               

               
Cow position:
               
chr11:21894536-21894054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 64
               

               
Conread position:
               
30-483
               

               
Cow position:
               
chr11:5032161-5031692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 136
               

               
Conread position:
               
30-521
               

               
Cow position:
               
chr11:68207232-68206716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 187
               

               
Conread position:
               
31-296
               

               
Cow position:
               
chr11:46591946-46592216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
152, 43
               

               
Conread position:
               
33-401
               

               
Cow position:
               
chr11:30110572-30110963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 188
               

               
Conread position:
               
33-507
               

               
Cow position:
               
chr11:67746896-67747391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 178
               

               
Conread position:
               
33-522
               

               
Cow position:
               
chr11:20601858-20602349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 174
               

               
Conread position:
               
33-596
               

               
Cow position:
               
chr11:24438618-24438010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 261
               

               
Conread position:
               
34-486
               

               
Cow position:
               
chr11:1380314-1380762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 173
               

               
Conread position:
               
34-521
               

               
Cow position:
               
chr11:259564-259046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
99, 9
               

               
Conread position:
               
34-546
               

               
Cow position:
               
chr11:5075591-5075070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 141
               

               
Conread position:
               
35-485
               

               
Cow position:
               
chr11:6594627-6594154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 171
               

               
Conread position:
               
35-489
               

               
Cow position:
               
chr11:8428104-8428599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 349
               

               
Conread position:
               
36-473
               

               
Cow position:
               
chr11:52516233-52516674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
140, 201
               

               
Conread position:
               
41-508
               

               
Cow position:
               
chr11:48428709-48429221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
89, 151
               

               
Conread position:
               
43-503
               

               
Cow position:
               
chr11:48649584-48650074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 60
               

               
Conread position:
               
43-511
               

               
Cow position:
               
chr11:65409533-65409043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 168
               

               
Conread position:
               
43-557
               

               
Cow position:
               
chr11:10094971-10095514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 62
               

               
Conread position:
               
43-558
               

               
Cow position:
               
chr11:70484234-70483679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 165
               

               
Conread position:
               
49-409
               

               
Cow position:
               
chr11:53130450-53130822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 74
               

               
Conread position:
               
53-505
               

               
Cow position:
               
chr11:35684861-35684396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 156
               

               
Conread position:
               
54-525
               

               
Cow position:
               
chr11:35874334-35873879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
10, 69
               

               
Conread position:
               
54-555
               

               
Cow position:
               
chr11:38235877-38236414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 159
               

               
Conread position:
               
54-596
               

               
Cow position:
               
chr11:42016994-42016430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
57-450
               

               
Cow position:
               
chr11:16910726-16910309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 152
               

               
Conread position:
               
57-460
               

               
Cow position:
               
chr11:4323009-4323419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 150
               

               
Conread position:
               
57-556
               

               
Cow position:
               
chr11:865939-866450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 153
               

               
Conread position:
               
58-410
               

               
Cow position:
               
chr11:37068660-37068307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 149
               

               
Conread position:
               
58-485
               

               
Cow position:
               
chr11:26483365-26483792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 41
               

               
Conread position:
               
62-466
               

               
Cow position:
               
chr11:30121014-30120595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
63-513
               

               
Cow position:
               
chr11:64638874-64638413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 57
               

               
Conread position:
               
64-393
               

               
Cow position:
               
chr11:81614979-81614647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 64
               

               
Conread position:
               
64-488
               

               
Cow position:
               
chr11:41809827-41809406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 102
               

               
Conread position:
               
65-608
               

               
Cow position:
               
chr11:4435972-4436553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 8
               

               
Conread position:
               
67-390
               

               
Cow position:
               
chr11:47165481-47165151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
115, 54
               

               
Conread position:
               
67-464
               

               
Cow position:
               
chr11:41812259-41811850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 138
               

               
Conread position:
               
73-590
               

               
Cow position:
               
chr11:59463977-59463434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 132
               

               
Conread position:
               
75-364
               

               
Cow position:
               
chr11:35275956-35276267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
59, 137
               

               
Conread position:
               
75-382
               

               
Cow position:
               
chr11:43913882-43914197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 97
               

               
Conread position:
               
75-588
               

               
Cow position:
               
chr11:63065319-63065854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 31
               

               
Conread position:
               
78-391
               

               
Cow position:
               
chr11:58459783-58460102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 135
               

               
Conread position:
               
78-558
               

               
Cow position:
               
chr11:22978199-22977710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 132
               

               
Conread position:
               
78-558
               

               
Cow position:
               
chr11:42836296-42835781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 45
               

               
Conread position:
               
80-411
               

               
Cow position:
               
chr11:9837437-9837088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
82-571
               

               
Cow position:
               
chr11:86926254-86925779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
83-463
               

               
Cow position:
               
chr11:439990-439599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 172
               

               
Conread position:
               
84-521
               

               
Cow position:
               
chr11:46748194-46747729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 18
               

               
Conread position:
               
88-483
               

               
Cow position:
               
chr11:40793027-40792621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 126
               

               
Conread position:
               
89-557
               

               
Cow position:
               
chr11:30934094-30934563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
90-468
               

               
Cow position:
               
chr11:70272978-70273375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
91-474
               

               
Cow position:
               
chr11:51144394-51144788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
83, 116
               

               
Conread position:
               
91-558
               

               
Cow position:
               
chr11:68910176-68909681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 121
               

               
Conread position:
               
94-476
               

               
Cow position:
               
chr11:36848622-36848993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 77
               

               
Conread position:
               
96-505
               

               
Cow position:
               
chr11:20761527-20761946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
97-557
               

               
Cow position:
               
chr11:60302275-60301806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 110
               

               
Conread position:
               
101-508
               

               
Cow position:
               
chr11:45898370-45897944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
101-521
               

               
Cow position:
               
chr11:49935059-49934613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 113
               

               
Conread position:
               
101-556
               

               
Cow position:
               
chr11:41986357-41985878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 107
               

               
Conread position:
               
101-558
               

               
Cow position:
               
chr11:6234192-6233706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 180
               

               
Conread position:
               
103-512
               

               
Cow position:
               
chr11:39118477-39118874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 53
               

               
Conread position:
               
103-521
               

               
Cow position:
               
chr11:39499065-39499485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
138, 77
               

               
Conread position:
               
103-558
               

               
Cow position:
               
chr11:34962751-34963223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 63
               

               
Conread position:
               
104-488
               

               
Cow position:
               
chr11:23232823-23232433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 35
               

               
Conread position:
               
107-408
               

               
Cow position:
               
chr11:32609687-32610006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
75, 18
               

               
Conread position:
               
112-559
               

               
Cow position:
               
chr11:58103076-58102585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
113-348
               

               
Cow position:
               
chr11:57111608-57111358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
114-476
               

               
Cow position:
               
chr11:77118414-77118776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
15, 102
               

               
Conread position:
               
114-590
               

               
Cow position:
               
chr11:78381345-78380867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
115-357
               

               
Cow position:
               
chr11:53719648-53719900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
67, 8
               

               
Conread position:
               
115-392
               

               
Cow position:
               
chr11:65857558-65857852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
67, 92
               

               
Conread position:
               
116-486
               

               
Cow position:
               
chr11:8148190-8147812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
116-558
               

               
Cow position:
               
chr11:18698574-18699042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 93
               

               
Conread position:
               
116-558
               

               
Cow position:
               
chr11:19487774-19487307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
72, 63
               

               
Conread position:
               
116-582
               

               
Cow position:
               
chr11:85723403-85723890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 242
               

               
Conread position:
               
117-393
               

               
Cow position:
               
chr11:1485658-1485366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
117-521
               

               
Cow position:
               
chr11:87155215-87155651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 92
               

               
Conread position:
               
120-567
               

               
Cow position:
               
chr11:18572509-18572964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 85
               

               
Conread position:
               
120-616
               

               
Cow position:
               
chr11:65827027-65826526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
122-393
               

               
Cow position:
               
chr11:62965847-62965555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
7, 86
               

               
Conread position:
               
124-589
               

               
Cow position:
               
chr11:8988520-8988025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 84
               

               
Conread position:
               
127-483
               

               
Cow position:
               
chr11:56654259-56654639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
128-503
               

               
Cow position:
               
chr11:80530084-80530464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 79
               

               
Conread position:
               
128-503
               

               
Cow position:
               
chr11:83066209-83066591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
128-505
               

               
Cow position:
               
chr11:83230671-83230295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
128-558
               

               
Cow position:
               
chr11:48932869-48932417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
128-558
               

               
Cow position:
               
chr11:49148763-49149218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
128-566
               

               
Cow position:
               
chr11:43646703-43646250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
128-587
               

               
Cow position:
               
chr11:18484446-18484000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
54, 79
               

               
Conread position:
               
128-595
               

               
Cow position:
               
chr11:11125376-11125861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 80
               

               
Conread position:
               
129-467
               

               
Cow position:
               
chr11:62880908-62880564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
130-393
               

               
Cow position:
               
chr11:41983733-41983464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
132-580
               

               
Cow position:
               
chr11:12111750-12111283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
45, 75
               

               
Conread position:
               
134-393
               

               
Cow position:
               
chr11:8105502-8105778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
48, 73
               

               
Conread position:
               
134-393
               

               
Cow position:
               
chr11:12555698-12555411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
33, 70
               

               
Conread position:
               
134-557
               

               
Cow position:
               
chr11:73354336-73353896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
134-589
               

               
Cow position:
               
chr11:71806397-71805964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
158, 18
               

               
Conread position:
               
136-571
               

               
Cow position:
               
chr11:13043415-13042963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
137-385
               

               
Cow position:
               
chr11:75748158-75748419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
137-420
               

               
Cow position:
               
chr11:38193874-38194178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 70
               

               
Conread position:
               
137-464
               

               
Cow position:
               
chr11:32377910-32378252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
137-486
               

               
Cow position:
               
chr11:9222003-9221645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
137-488
               

               
Cow position:
               
chr11:1362758-1362381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 65
               

               
Conread position:
               
137-488
               

               
Cow position:
               
chr11:3282781-3283110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
44, 63
               

               
Conread position:
               
137-522
               

               
Cow position:
               
chr11:34830057-34829664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 137
               

               
Conread position:
               
137-552
               

               
Cow position:
               
chr11:24601689-24602123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
137-558
               

               
Cow position:
               
chr11:8828906-8828480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
38, 76
               

               
Conread position:
               
137-558
               

               
Cow position:
               
chr11:48474431-48474881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 43
               

               
Conread position:
               
137-558
               

               
Cow position:
               
chr11:67600490-67600950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 70
               

               
Conread position:
               
137-571
               

               
Cow position:
               
chr11:55761602-55762041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
138-441
               

               
Cow position:
               
chr11:48697171-48697486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
44, 69
               

               
Conread position:
               
138-467
               

               
Cow position:
               
chr11:18341308-18340973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
138-558
               

               
Cow position:
               
chr11:35348034-35347579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
46, 147
               

               
Conread position:
               
139-488
               

               
Cow position:
               
chr11:377926-377555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
139-508
               

               
Cow position:
               
chr11:62155355-62155745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
139-558
               

               
Cow position:
               
chr11:41271862-41272290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
29, 69
               

               
Conread position:
               
139-568
               

               
Cow position:
               
chr11:17036827-17036350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
140-469
               

               
Cow position:
               
chr11:65445105-65444773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
103, 40
               

               
Conread position:
               
140-507
               

               
Cow position:
               
chr11:67804478-67804850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
140-556
               

               
Cow position:
               
chr11:45632039-45631610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
140-558
               

               
Cow position:
               
chr11:6400346-6399892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
141-438
               

               
Cow position:
               
chr11:22932235-22931932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
141-502
               

               
Cow position:
               
chr11:11232728-11232348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
142-571
               

               
Cow position:
               
chr11:56821528-56821077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
143-464
               

               
Cow position:
               
chr11:5227010-5226666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
24, 61
               

               
Conread position:
               
143-495
               

               
Cow position:
               
chr11:50778098-50778464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
24, 65
               

               
Conread position:
               
143-558
               

               
Cow position:
               
chr11:66041002-66041444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
39, 64
               

               
Conread position:
               
143-588
               

               
Cow position:
               
chr11:4663301-4662862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
144-492
               

               
Cow position:
               
chr11:40258668-40258319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
144-558
               

               
Cow position:
               
chr11:19247466-19247033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
145-483
               

               
Cow position:
               
chr11:55333639-55333993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 62
               

               
Conread position:
               
146-488
               

               
Cow position:
               
chr11:34032464-34032112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 59
               

               
Conread position:
               
146-563
               

               
Cow position:
               
chr11:62574267-62573851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
148-445
               

               
Cow position:
               
chr11:30596730-30597039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
34, 54
               

               
Conread position:
               
149-483
               

               
Cow position:
               
chr11:36799561-36799224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
150-503
               

               
Cow position:
               
chr11:63482690-63482321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
150-558
               

               
Cow position:
               
chr11:27746653-27747090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 138
               

               
Conread position:
               
152-457
               

               
Cow position:
               
chr11:30764217-30764548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
155-393
               

               
Cow position:
               
chr11:63516563-63516820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
156-390
               

               
Cow position:
               
chr11:62808899-62808662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 43
               

               
Conread position:
               
156-571
               

               
Cow position:
               
chr11:36647102-36647512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
157-472
               

               
Cow position:
               
chr11:45872576-45872238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
25, 231
               

               
Conread position:
               
157-507
               

               
Cow position:
               
chr11:77128411-77128766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
160-607
               

               
Cow position:
               
chr11:31227748-31228172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
162-475
               

               
Cow position:
               
chr11:52983452-52983751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
162-558
               

               
Cow position:
               
chr11:25620643-25620218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
163-434
               

               
Cow position:
               
chr11:36113916-36114191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 6
               

               
Conread position:
               
163-558
               

               
Cow position:
               
chr11:66188565-66188149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
166-558
               

               
Cow position:
               
chr11:77546178-77546568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
16, 9
               

               
Conread position:
               
169-508
               

               
Cow position:
               
chr11:38578008-38577672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 9
               

               
Conread position:
               
182-439
               

               
Cow position:
               
chr11:14094648-14094380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
182-464
               

               
Cow position:
               
chr11:10687111-10686822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
182-474
               

               
Cow position:
               
chr11:2509519-2509231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
182-474
               

               
Cow position:
               
chr11:32436105-32436408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
182-488
               

               
Cow position:
               
chr11:22499575-22499280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
182-495
               

               
Cow position:
               
chr11:47544904-47545226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
182-552
               

               
Cow position:
               
chr11:81406381-81406001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
182-555
               

               
Cow position:
               
chr11:36112194-36112578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
182-557
               

               
Cow position:
               
chr11:47899053-47899421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
182-557
               

               
Cow position:
               
chr11:56675694-56676096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
182-557
               

               
Cow position:
               
chr11:71008927-71009278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
182-558
               

               
Cow position:
               
chr11:26144308-26143927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 16
               

               
Conread position:
               
182-558
               

               
Cow position:
               
chr11:35154051-35153648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
182-563
               

               
Cow position:
               
chr11:29960081-29960469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
182-589
               

               
Cow position:
               
chr11:33348408-33347996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
182-596
               

               
Cow position:
               
chr11:5961089-5961517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
182-598
               

               
Cow position:
               
chr11:48544219-48544650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
182-608
               

               
Cow position:
               
chr11:2083924-2084366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
182-608
               

               
Cow position:
               
chr11:70422793-70422368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
183-488
               

               
Cow position:
               
chr11:3233858-3234162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
183-509
               

               
Cow position:
               
chr11:33310749-33311087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
183-564
               

               
Cow position:
               
chr11:23586413-23586804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
183-587
               

               
Cow position:
               
chr11:39462395-39462820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
184-428
               

               
Cow position:
               
chr11:83000753-83000500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
184-474
               

               
Cow position:
               
chr11:16262254-16261950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
184-555
               

               
Cow position:
               
chr11:34145138-34144750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
184-588
               

               
Cow position:
               
chr11:2925512-2925107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
185-508
               

               
Cow position:
               
chr11:36659033-36658717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
185-558
               

               
Cow position:
               
chr11:35723756-35724142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
185-602
               

               
Cow position:
               
chr11:2907743-2907319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
47, 91
               

               
Conread position:
               
186-508
               

               
Cow position:
               
chr11:17574540-17574241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
186-518
               

               
Cow position:
               
chr11:82108107-82107783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
186-587
               

               
Cow position:
               
chr11:15772942-15772510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
187-457
               

               
Cow position:
               
chr11:61859118-61858845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
188-521
               

               
Cow position:
               
chr11:11469851-11469523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
46, 10
               

               
Conread position:
               
189-488
               

               
Cow position:
               
chr11:42044207-42043910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
192-596
               

               
Cow position:
               
chr11:76889842-76890252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
194-473
               

               
Cow position:
               
chr11:69810691-69810977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
194-511
               

               
Cow position:
               
chr11:4207100-4207424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
22, 80
               

               
Conread position:
               
196-402
               

               
Cow position:
               
chr11:18399536-18399326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
197-438
               

               
Cow position:
               
chr11:2811933-2811691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
197-488
               

               
Cow position:
               
chr11:36238572-36238864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
197-507
               

               
Cow position:
               
chr11:61958959-61958635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 151
               

               
Conread position:
               
197-521
               

               
Cow position:
               
chr11:11557959-11558301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
197-558
               

               
Cow position:
               
chr11:63434268-63433894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
197-571
               

               
Cow position:
               
chr11:38874612-38874234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
197-571
               

               
Cow position:
               
chr11:65607903-65607506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
198-408
               

               
Cow position:
               
chr11:36672259-36672036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 168
               

               
Conread position:
               
199-488
               

               
Cow position:
               
chr11:71493068-71492775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
199-508
               

               
Cow position:
               
chr11:72375896-72375567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
30, 78
               

               
Conread position:
               
200-472
               

               
Cow position:
               
chr11:49231667-49231946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
201-591
               

               
Cow position:
               
chr11:19592203-19591794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 163
               

               
Conread position:
               
202-411
               

               
Cow position:
               
chr11:51626767-51626975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
88, 22
               

               
Conread position:
               
202-558
               

               
Cow position:
               
chr11:64104259-64103879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
202-589
               

               
Cow position:
               
chr11:38334310-38334721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 157
               

               
Conread position:
               
202-605
               

               
Cow position:
               
chr11:27913070-27913504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
28, 323
               

               
Conread position:
               
203-483
               

               
Cow position:
               
chr11:27932062-27932365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 126
               

               
Conread position:
               
203-508
               

               
Cow position:
               
chr11:27764949-27765261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
26, 75
               

               
Conread position:
               
205-571
               

               
Cow position:
               
chr11:14470169-14470546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
205-605
               

               
Cow position:
               
chr11:68912941-68913361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
206-475
               

               
Cow position:
               
chr11:63909853-63909591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
206-509
               

               
Cow position:
               
chr11:53511888-53512189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
210-513
               

               
Cow position:
               
chr11:2932961-2933266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
210-548
               

               
Cow position:
               
chr11:63202436-63202085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
211-558
               

               
Cow position:
               
chr11:70601019-70600655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
18, 195
               

               
Conread position:
               
212-439
               

               
Cow position:
               
chr11:48042233-48041993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
213-558
               

               
Cow position:
               
chr11:65058808-65058440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 141
               

               
Conread position:
               
213-625
               

               
Cow position:
               
chr11:2874192-2874644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
19, 142
               

               
Conread position:
               
214-554
               

               
Cow position:
               
chr11:47639223-47638856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
217-484
               

               
Cow position:
               
chr11:15373659-15373923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
12, 89
               

               
Conread position:
               
217-486
               

               
Cow position:
               
chr11:21438031-21438293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
220-571
               

               
Cow position:
               
chr11:51729105-51729459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 51
               

               
Conread position:
               
221-438
               

               
Cow position:
               
chr11:57171015-57170791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
221-476
               

               
Cow position:
               
chr11:48383341-48383597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 131
               

               
Conread position:
               
221-517
               

               
Cow position:
               
chr11:71501317-71501012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
11, 137
               

               
Conread position:
               
222-507
               

               
Cow position:
               
chr11:30954817-30955108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
222-508
               

               
Cow position:
               
chr11:70278287-70278006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 46
               

               
Conread position:
               
223-508
               

               
Cow position:
               
chr11:16907220-16906936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
21, 5
               

               
Conread position:
               
225-483
               

               
Cow position:
               
chr11:1157466-1157727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
7, 46
               

               
Conread position:
               
226-608
               

               
Cow position:
               
chr11:45889783-45890158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
228-428
               

               
Cow position:
               
chr11:21428166-21427964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
62, 40
               

               
Conread position:
               
229-470
               

               
Cow position:
               
chr11:81611596-81611839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
229-507
               

               
Cow position:
               
chr11:47004175-47004457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
229-508
               

               
Cow position:
               
chr11:83687603-83687321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
230-589
               

               
Cow position:
               
chr11:69844198-69844563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
60, 38
               

               
Conread position:
               
231-397
               

               
Cow position:
               
chr11:65843266-65843097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
233-558
               

               
Cow position:
               
chr11:9270897-9270566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 118
               

               
Conread position:
               
237-393
               

               
Cow position:
               
chr11:6101443-6101603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
238-558
               

               
Cow position:
               
chr11:13592573-13592911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
242-557
               

               
Cow position:
               
chr11:28993890-28993577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
243-428
               

               
Cow position:
               
chr11:30543460-30543648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
47, 110
               

               
Conread position:
               
243-437
               

               
Cow position:
               
chr11:67136597-67136393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
24, 181
               

               
Conread position:
               
243-464
               

               
Cow position:
               
chr11:80756941-80756716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
243-477
               

               
Cow position:
               
chr11:41176107-41175870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
243-483
               

               
Cow position:
               
chr11:8545170-8544934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
243-490
               

               
Cow position:
               
chr11:60143456-60143211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 5
               

               
Conread position:
               
243-508
               

               
Cow position:
               
chr11:63499481-63499224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 113
               

               
Conread position:
               
243-513
               

               
Cow position:
               
chr11:40479012-40478739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
243-520
               

               
Cow position:
               
chr11:17493321-17493613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
243-521
               

               
Cow position:
               
chr11:70086167-70086458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
23, 211
               

               
Conread position:
               
243-558
               

               
Cow position:
               
chr11:30209978-30209651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
243-558
               

               
Cow position:
               
chr11:30830773-30830451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
70, 55
               

               
Conread position:
               
243-558
               

               
Cow position:
               
chr11:75874909-75874600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
243-584
               

               
Cow position:
               
chr11:45619192-45619549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 67
               

               
Conread position:
               
243-589
               

               
Cow position:
               
chr11:71390721-71390369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
244-557
               

               
Cow position:
               
chr11:42296774-42296456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
244-558
               

               
Cow position:
               
chr11:7385273-7385606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
244-584
               

               
Cow position:
               
chr11:48295876-48296225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
245-557
               

               
Cow position:
               
chr11:31337225-31337550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
46, 129
               

               
Conread position:
               
248-508
               

               
Cow position:
               
chr11:40573486-40573227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
248-508
               

               
Cow position:
               
chr11:69307354-69307626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
248-558
               

               
Cow position:
               
chr11:70978887-70978563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
248-593
               

               
Cow position:
               
chr11:83925894-83926239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
249-475
               

               
Cow position:
               
chr11:6202295-6202519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
249-508
               

               
Cow position:
               
chr11:66572653-66572387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
249-558
               

               
Cow position:
               
chr11:6245170-6245493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
249-558
               

               
Cow position:
               
chr11:84228865-84228551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
249-595
               

               
Cow position:
               
chr11:32254370-32254005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
250-399
               

               
Cow position:
               
chr11:70824945-70825091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
250-558
               

               
Cow position:
               
chr11:64048268-64048562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
163, 27
               

               
Conread position:
               
250-588
               

               
Cow position:
               
chr11:41134216-41133879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
251-410
               

               
Cow position:
               
chr11:65435704-65435864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
39, 17
               

               
Conread position:
               
251-475
               

               
Cow position:
               
chr11:46952799-46953023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 103
               

               
Conread position:
               
251-496
               

               
Cow position:
               
chr11:48306493-48306252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
251-508
               

               
Cow position:
               
chr11:6633562-6633823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
253-558
               

               
Cow position:
               
chr11:49057255-49057555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
254-521
               

               
Cow position:
               
chr11:48659778-48660060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
254-569
               

               
Cow position:
               
chr11:63435371-63435706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
255-558
               

               
Cow position:
               
chr11:23272145-23271834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
255-581
               

               
Cow position:
               
chr11:7460763-7460429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 90
               

               
Conread position:
               
256-589
               

               
Cow position:
               
chr11:70756333-70756677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
258-475
               

               
Cow position:
               
chr11:16540720-16540938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
57, 9
               

               
Conread position:
               
258-505
               

               
Cow position:
               
chr11:4653118-4652863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
262-595
               

               
Cow position:
               
chr11:52690661-52690318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 6
               

               
Conread position:
               
262-603
               

               
Cow position:
               
chr11:70206184-70206531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
47, 6
               

               
Conread position:
               
264-558
               

               
Cow position:
               
chr11:21398827-21399110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
265-405
               

               
Cow position:
               
chr11:15525823-15525972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
265-456
               

               
Cow position:
               
chr11:76652885-76653076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
265-563
               

               
Cow position:
               
chr11:43008443-43008129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 80
               

               
Conread position:
               
268-558
               

               
Cow position:
               
chr11:13864232-13863930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
24, 43
               

               
Conread position:
               
268-558
               

               
Cow position:
               
chr11:63999224-63998918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 128
               

               
Conread position:
               
269-476
               

               
Cow position:
               
chr11:56734496-56734706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
269-504
               

               
Cow position:
               
chr11:71807704-71807458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
21, 130
               

               
Conread position:
               
269-555
               

               
Cow position:
               
chr11:57873696-57873977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 87
               

               
Conread position:
               
269-558
               

               
Cow position:
               
chr11:50472182-50472490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
23, 78
               

               
Conread position:
               
269-584
               

               
Cow position:
               
chr11:62742766-62742443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 74
               

               
Conread position:
               
271-475
               

               
Cow position:
               
chr11:64868146-64867945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 60
               

               
Conread position:
               
275-474
               

               
Cow position:
               
chr11:47837186-47837394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 128
               

               
Conread position:
               
275-559
               

               
Cow position:
               
chr11:11994832-11994539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 55
               

               
Conread position:
               
276-475
               

               
Cow position:
               
chr11:33345317-33345521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
276-521
               

               
Cow position:
               
chr11:27719449-27719212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
14, 122
               

               
Conread position:
               
276-558
               

               
Cow position:
               
chr11:81168158-81167859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
17, 172
               

               
Conread position:
               
277-508
               

               
Cow position:
               
chr11:41293944-41293703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
277-600
               

               
Cow position:
               
chr11:13940066-13940401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 69
               

               
Conread position:
               
279-558
               

               
Cow position:
               
chr11:21507883-21508183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
280-483
               

               
Cow position:
               
chr11:53510620-53510419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
283-589
               

               
Cow position:
               
chr11:372814-372511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
7, 61
               

               
Conread position:
               
284-488
               

               
Cow position:
               
chr11:83033353-83033153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
285-558
               

               
Cow position:
               
chr11:42066744-42067036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
65, 111
               

               
Conread position:
               
286-483
               

               
Cow position:
               
chr11:35573606-35573408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
286-555
               

               
Cow position:
               
chr11:30728289-30728570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
127, 63
               

               
Conread position:
               
286-558
               

               
Cow position:
               
chr11:47311100-47310812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
20, 112
               

               
Conread position:
               
286-571
               

               
Cow position:
               
chr11:63920164-63919882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
23, 52
               

               
Conread position:
               
289-561
               

               
Cow position:
               
chr11:31874980-31875269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
291-506
               

               
Cow position:
               
chr11:72333482-72333699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
291-556
               

               
Cow position:
               
chr11:31506734-31506998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 194
               

               
Conread position:
               
291-562
               

               
Cow position:
               
chr11:29659452-29659734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
294-475
               

               
Cow position:
               
chr11:46998877-46999054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
294-475
               

               
Cow position:
               
chr11:75965757-75965576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
294-477
               

               
Cow position:
               
chr11:36635145-36634964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
294-558
               

               
Cow position:
               
chr11:5217574-5217288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
298-556
               

               
Cow position:
               
chr11:37919147-37918878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
298-596
               

               
Cow position:
               
chr11:16314769-16315084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
299-475
               

               
Cow position:
               
chr11:55203559-55203384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
114, 11
               

               
Conread position:
               
299-503
               

               
Cow position:
               
chr11:80413114-80412909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
301-567
               

               
Cow position:
               
chr11:30210808-30211066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 87
               

               
Conread position:
               
310-483
               

               
Cow position:
               
chr11:3739863-3740037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
310-489
               

               
Cow position:
               
chr11:7013833-7013655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
42, 83
               

               
Conread position:
               
310-546
               

               
Cow position:
               
chr11:30370018-30370262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 101
               

               
Conread position:
               
310-558
               

               
Cow position:
               
chr11:1067532-1067266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
44, 32
               

               
Conread position:
               
310-558
               

               
Cow position:
               
chr11:30808691-30808425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
310-558
               

               
Cow position:
               
chr11:35536498-35536747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
103, 32
               

               
Conread position:
               
310-589
               

               
Cow position:
               
chr11:8669918-8670220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 55
               

               
Conread position:
               
310-590
               

               
Cow position:
               
chr11:22676026-22676324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
311-521
               

               
Cow position:
               
chr11:35926995-35926778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 105
               

               
Conread position:
               
313-518
               

               
Cow position:
               
chr11:71935041-71934829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 41
               

               
Conread position:
               
314-508
               

               
Cow position:
               
chr11:70825866-70826063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
99, 9
               

               
Conread position:
               
315-558
               

               
Cow position:
               
chr11:36920664-36920406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
318-508
               

               
Cow position:
               
chr11:62778366-62778552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
95, 6
               

               
Conread position:
               
319-503
               

               
Cow position:
               
chr11:32398556-32398738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
319-508
               

               
Cow position:
               
chr11:5789971-5789787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
94, 31
               

               
Conread position:
               
319-508
               

               
Cow position:
               
chr11:22747410-22747222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
36, 17
               

               
Conread position:
               
319-508
               

               
Cow position:
               
chr11:71341546-71341356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 31
               

               
Conread position:
               
319-508
               

               
Cow position:
               
chr11:82289494-82289691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 103
               

               
Conread position:
               
319-559
               

               
Cow position:
               
chr11:84890801-84890555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 128
               

               
Conread position:
               
319-560
               

               
Cow position:
               
chr11:41603770-41603527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
34, 145
               

               
Conread position:
               
319-571
               

               
Cow position:
               
chr11:27565255-27565503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
94, 27
               

               
Conread position:
               
319-579
               

               
Cow position:
               
chr11:41313737-41313468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
94, 39
               

               
Conread position:
               
319-615
               

               
Cow position:
               
chr11:67912233-67911933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
320-558
               

               
Cow position:
               
chr11:19946355-19946593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
320-558
               

               
Cow position:
               
chr11:57503402-57503652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
93, 196
               

               
Conread position:
               
323-475
               

               
Cow position:
               
chr11:19586378-19586535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
323-507
               

               
Cow position:
               
chr11:67312694-67312892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
324-590
               

               
Cow position:
               
chr11:18785947-18785694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
325-508
               

               
Cow position:
               
chr11:79019135-79018950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
328-557
               

               
Cow position:
               
chr11:62813024-62812781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 226
               

               
Conread position:
               
329-559
               

               
Cow position:
               
chr11:57608527-57608293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
156, 83
               

               
Conread position:
               
333-557
               

               
Cow position:
               
chr11:35109604-35109369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
334-481
               

               
Cow position:
               
chr11:71482313-71482462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
334-558
               

               
Cow position:
               
chr11:76835696-76835467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 8
               

               
Conread position:
               
341-558
               

               
Cow position:
               
chr11:41212983-41213224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
72, 104
               

               
Conread position:
               
345-513
               

               
Cow position:
               
chr11:71110836-71111003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
68, 143
               

               
Conread position:
               
346-504
               

               
Cow position:
               
chr11:62754374-62754213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
347-508
               

               
Cow position:
               
chr11:34692799-34692964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
349-555
               

               
Cow position:
               
chr11:39855065-39854853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
136, 66
               

               
Conread position:
               
349-581
               

               
Cow position:
               
chr11:38211594-38211836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
64, 212
               

               
Conread position:
               
352-483
               

               
Cow position:
               
chr11:62230132-62230264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
352-484
               

               
Cow position:
               
chr11:34106718-34106586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 126
               

               
Conread position:
               
352-558
               

               
Cow position:
               
chr11:46922934-46922715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
352-565
               

               
Cow position:
               
chr11:19657270-19657036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
353-483
               

               
Cow position:
               
chr11:61137222-61137091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-508
               

               
Cow position:
               
chr11:2639704-2639543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
353-581
               

               
Cow position:
               
chr11:8584280-8584510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 91
               

               
Conread position:
               
353-584
               

               
Cow position:
               
chr11:56311643-56311404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
60, 222
               

               
Conread position:
               
353-587
               

               
Cow position:
               
chr11:63484899-63485132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
154, 33
               

               
Conread position:
               
353-591
               

               
Cow position:
               
chr11:84977406-84977168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 120
               

               
Conread position:
               
353-626
               

               
Cow position:
               
chr11:29677155-29677445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
38, 231
               

               
Conread position:
               
354-558
               

               
Cow position:
               
chr11:3714779-3714994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
123, 41
               

               
Conread position:
               
354-558
               

               
Cow position:
               
chr11:35669998-35669794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
59, 103
               

               
Conread position:
               
354-589
               

               
Cow position:
               
chr11:48512118-48512351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
205, 119
               

               
Conread position:
               
354-592
               

               
Cow position:
               
chr11:30172263-30172505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
116, 57
               

               
Conread position:
               
355-464
               

               
Cow position:
               
chr11:65624838-65624729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
355-483
               

               
Cow position:
               
chr11:29983762-29983634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
58, 92
               

               
Conread position:
               
355-558
               

               
Cow position:
               
chr11:39249927-39250136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 108
               

               
Conread position:
               
355-567
               

               
Cow position:
               
chr11:27462143-27461930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 68
               

               
Conread position:
               
355-589
               

               
Cow position:
               
chr11:77013739-77013976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
167, 59
               

               
Conread position:
               
355-598
               

               
Cow position:
               
chr11:5219204-5218950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
356-507
               

               
Cow position:
               
chr11:48063845-48063695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
58, 116
               

               
Conread position:
               
356-524
               

               
Cow position:
               
chr11:45849544-45849363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 79
               

               
Conread position:
               
356-557
               

               
Cow position:
               
chr11:35352083-35351862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
121, 55
               

               
Conread position:
               
356-558
               

               
Cow position:
               
chr11:62889938-62889720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
356-565
               

               
Cow position:
               
chr11:29786544-29786314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
357-558
               

               
Cow position:
               
chr11:28078460-28078661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
128, 57
               

               
Conread position:
               
357-558
               

               
Cow position:
               
chr11:43914250-43914465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
357-589
               

               
Cow position:
               
chr11:80616200-80616419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
357-595
               

               
Cow position:
               
chr11:78820111-78820357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
357-604
               

               
Cow position:
               
chr11:58927540-58927785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 72
               

               
Conread position:
               
358-521
               

               
Cow position:
               
chr11:34136201-34136371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
362-519
               

               
Cow position:
               
chr11:18608276-18608109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
364-596
               

               
Cow position:
               
chr11:58173589-58173828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 63
               

               
Conread position:
               
367-557
               

               
Cow position:
               
chr11:69417370-69417574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
111, 46
               

               
Conread position:
               
367-616
               

               
Cow position:
               
chr11:66939626-66939365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
46, 215
               

               
Conread position:
               
369-558
               

               
Cow position:
               
chr11:60720488-60720282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
21, 6
               

               
Conread position:
               
369-558
               

               
Cow position:
               
chr11:63382222-63382025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
369-559
               

               
Cow position:
               
chr11:64408945-64409139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
109, 46
               

               
Conread position:
               
369-587
               

               
Cow position:
               
chr11:31537471-31537247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
370-558
               

               
Cow position:
               
chr11:9237877-9237676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
378-594
               

               
Cow position:
               
chr11:25783690-25783922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 204
               

               
Conread position:
               
380-591
               

               
Cow position:
               
chr11:19579035-19578818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
380-609
               

               
Cow position:
               
chr11:17517378-17517626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
34, 152
               

               
Conread position:
               
382-555
               

               
Cow position:
               
chr11:46784456-46784632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
384-588
               

               
Cow position:
               
chr11:25968867-25968650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 33
               

               
Conread position:
               
384-589
               

               
Cow position:
               
chr11:21830226-21830001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 130
               

               
Conread position:
               
385-558
               

               
Cow position:
               
chr11:37100184-37100000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
385-590
               

               
Cow position:
               
chr11:15366988-15366774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 115
               

               
Conread position:
               
385-596
               

               
Cow position:
               
chr11:87172092-87171861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
28, 137
               

               
Conread position:
               
386-558
               

               
Cow position:
               
chr11:86895362-86895544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
388-585
               

               
Cow position:
               
chr11:1980280-1980068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 194
               

               
Conread position:
               
388-590
               

               
Cow position:
               
chr11:31901173-31901380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 141
               

               
Conread position:
               
390-558
               

               
Cow position:
               
chr11:5176388-5176209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
392-576
               

               
Cow position:
               
chr11:75749472-75749654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 5
               

               
Conread position:
               
392-589
               

               
Cow position:
               
chr11:23220353-23220564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
396-557
               

               
Cow position:
               
chr11:1485231-1485063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
396-557
               

               
Cow position:
               
chr11:33368078-33368242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 141
               

               
Conread position:
               
396-558
               

               
Cow position:
               
chr11:77241699-77241874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
400-558
               

               
Cow position:
               
chr11:58185882-58186044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
411-558
               

               
Cow position:
               
chr11:33369162-33369324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
411-589
               

               
Cow position:
               
chr11:37564885-37565073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
418-590
               

               
Cow position:
               
chr11:18210155-18209987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
144, 83
               
Show alignments to all cow chromosomes.