Cow genome map

Conread name: rpigcf0_003920.y1

Conread position: 201-492
Cow position: chr1:69678650-69678367 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 7, 12

Conread position: 208-523
Cow position: chr1:68827224-68826914 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 192
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 221, 91

Conread position: 237-506
Cow position: chr1:82884674-82884413 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 21

Conread position: 238-509
Cow position: chr1:57576054-57575780 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 55

Conread position: 238-523
Cow position: chr1:45535414-45535697 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 25

Conread position: 242-499
Cow position: chr1:99136714-99136462 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 16

Conread position: 242-501
Cow position: chr1:71946654-71946404 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 16

Conread position: 242-510
Cow position: chr1:52039353-52039612 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 16

Conread position: 242-511
Cow position: chr1:84255469-84255745 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 38

Conread position: 242-515
Cow position: chr1:24133339-24133077 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 242-520
Cow position: chr1:81613101-81613380 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 20

Conread position: 242-520
Cow position: chr1:85028677-85028943 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 195
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 276, 16

Conread position: 249-509
Cow position: chr1:99808003-99807742 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 19, 53

Conread position: 250-518
Cow position: chr1:41004647-41004375 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 72

Conread position: 250-523
Cow position: chr1:79165368-79165092 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 19

Conread position: 251-506
Cow position: chr1:33331349-33331110 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 198, 48

Conread position: 251-513
Cow position: chr1:53458430-53458680 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 201
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 54, 7

Conread position: 251-518
Cow position: chr1:62964004-62964261 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 9

Conread position: 251-520
Cow position: chr1:3061871-3061597 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 195
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 17, 159

Conread position: 251-523
Cow position: chr1:48105711-48105440 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 7

Conread position: 252-511
Cow position: chr1:32341483-32341229 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 183
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 8, 48

Conread position: 252-523
Cow position: chr1:54199656-54199389 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 8, 48

Conread position: 253-512
Cow position: chr1:89349700-89349943 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 15, 109

Conread position: 253-520
Cow position: chr1:61564517-61564786 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 254-494
Cow position: chr1:21460594-21460833 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 11, 38

Conread position: 254-507
Cow position: chr1:74822174-74822426 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 202

Conread position: 254-520
Cow position: chr1:40599776-40600032 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 12, 58

Conread position: 255-509
Cow position: chr1:51628775-51628519 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 194

Conread position: 257-520
Cow position: chr1:14379801-14379545 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 86

Conread position: 258-511
Cow position: chr1:26896094-26895845 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 192, 120

Conread position: 258-522
Cow position: chr1:25383390-25383655 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 107

Conread position: 259-518
Cow position: chr1:95499763-95499501 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 40

Conread position: 260-516
Cow position: chr1:60707135-60707388 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 191
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 7, 119

Conread position: 262-490
Cow position: chr1:61392056-61391829 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 37

Conread position: 262-507
Cow position: chr1:69539434-69539674 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 186, 37

Conread position: 263-507
Cow position: chr1:12596167-12595927 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 72

Conread position: 263-519
Cow position: chr1:50679549-50679293 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 163, 12

Conread position: 263-520
Cow position: chr1:80899844-80900107 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 152, 36

Conread position: 264-514
Cow position: chr1:90423349-90423100 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 168, 183

Conread position: 265-513
Cow position: chr1:1403732-1403499 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 183, 53

Conread position: 265-520
Cow position: chr1:99614190-99614436 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 22, 0

Conread position: 266-502
Cow position: chr1:43505262-43505496 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 97

Conread position: 266-511
Cow position: chr1:41696800-41697039 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 11

Conread position: 266-515
Cow position: chr1:5873232-5872983 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 192
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 161, 33

Conread position: 266-519
Cow position: chr1:1981371-1981127 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 183, 101

Conread position: 266-522
Cow position: chr1:101007875-101007631 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 179
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 161, 55

Conread position: 267-522
Cow position: chr1:68818056-68817808 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 32

Conread position: 267-523
Cow position: chr1:56748330-56748591 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 32

Conread position: 270-518
Cow position: chr1:44164822-44165070 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 168
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 178, 29

Conread position: 271-513
Cow position: chr1:47008771-47009013 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 27, 124

Conread position: 275-518
Cow position: chr1:78857575-78857334 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 25

Conread position: 275-523
Cow position: chr1:47233727-47233488 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 99

Conread position: 276-513
Cow position: chr1:50634657-50634418 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 182, 230

Conread position: 279-497
Cow position: chr1:29671772-29671555 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 170
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 114, 106

Conread position: 279-501
Cow position: chr1:68951384-68951598 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 169, 11

Conread position: 280-512
Cow position: chr1:3137686-3137912 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 141, 41

Conread position: 281-512
Cow position: chr1:63905720-63905489 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 167, 70

Conread position: 282-515
Cow position: chr1:71119266-71119504 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 146, 59

Conread position: 286-520
Cow position: chr1:94403975-94404201 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 184
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 166, 85

Conread position: 287-511
Cow position: chr1:71079193-71078976 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 177
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 162, 25

Conread position: 294-490
Cow position: chr1:20799639-20799845 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 157

Conread position: 298-519
Cow position: chr1:43358244-43358024 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 128, 78

Conread position: 299-502
Cow position: chr1:55705482-55705278 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 299-518
Cow position: chr1:79278670-79278458 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 149, 39

Conread position: 309-520
Cow position: chr1:53671968-53671750 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 72, 124

Conread position: 309-522
Cow position: chr1:98030696-98030905 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 139, 128

Conread position: 318-482
Cow position: chr1:75382782-75382946 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 321-521
Cow position: chr1:100393371-100393177 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 131, 0

Conread position: 322-512
Cow position: chr1:4414413-4414224 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 126, 46

Conread position: 328-500
Cow position: chr1:24542781-24542612 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 124, 46

Conread position: 331-506
Cow position: chr1:96277251-96277078 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 118, 45

Conread position: 336-517
Cow position: chr1:92369537-92369721 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 112, 0

Conread position: 341-512
Cow position: chr1:13810462-13810632 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 85, 106

Conread position: 343-509
Cow position: chr1:68763866-68763706 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 105, 33

Conread position: 343-516
Cow position: chr1:75933088-75933258 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 110, 33

Conread position: 345-512
Cow position: chr1:24445811-24445646 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 103, 24

Conread position: 348-516
Cow position: chr1:24581399-24581567 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 17, 126

Conread position: 359-514
Cow position: chr1:69127335-69127180 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 63, 33

Conread position: 363-513
Cow position: chr1:12978512-12978663 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 86, 0

Conread position: 363-515
Cow position: chr1:88913149-88913304 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 365-518
Cow position: chr1:86110898-86110742 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 15, 0

Conread position: 368-512
Cow position: chr1:31960061-31960208 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 32, 0

Conread position: 368-518
Cow position: chr1:89508393-89508544 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 78, 0

Conread position: 372-516
Cow position: chr1:42175565-42175710 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 81, 0

Conread position: 375-522
Cow position: chr1:65909370-65909519 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 384-523
Cow position: chr1:91023615-91023475 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 387-524
Cow position: chr1:8129111-8128976 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 120, 59

Show alignments to all cow chromosomes.