Cow genome map

Conread name: rpigcf0_003920.y1

Conread position: 217-500
Cow position: chr10:37668500-37668218 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 82

Conread position: 229-512
Cow position: chr10:52278395-52278680 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 15

Conread position: 234-510
Cow position: chr10:41803223-41802949 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 66

Conread position: 242-492
Cow position: chr10:22390282-22390522 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 188
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 203, 17

Conread position: 242-505
Cow position: chr10:20896986-20897249 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 16

Conread position: 242-507
Cow position: chr10:10134662-10134931 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 16

Conread position: 242-523
Cow position: chr10:37818874-37818593 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 16

Conread position: 246-523
Cow position: chr10:23056391-23056117 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 63

Conread position: 251-506
Cow position: chr10:51944057-51944305 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 7

Conread position: 251-520
Cow position: chr10:62353160-62353420 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 198
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 201, 7

Conread position: 254-471
Cow position: chr10:4310884-4311100 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 152, 121

Conread position: 254-502
Cow position: chr10:50390479-50390720 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 178, 65

Conread position: 254-509
Cow position: chr10:6529895-6530146 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 195, 120

Conread position: 254-509
Cow position: chr10:54476808-54477057 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 194, 87

Conread position: 254-510
Cow position: chr10:32503144-32503402 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 48

Conread position: 254-510
Cow position: chr10:47773430-47773679 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 14, 26

Conread position: 254-512
Cow position: chr10:15462191-15462441 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 109

Conread position: 254-516
Cow position: chr10:15294063-15294322 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 106, 54

Conread position: 254-519
Cow position: chr10:13368044-13368308 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 14, 123

Conread position: 254-522
Cow position: chr10:15818100-15817832 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 262

Conread position: 254-523
Cow position: chr10:31401205-31400932 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 255-522
Cow position: chr10:8077455-8077183 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 183
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 50, 0

Conread position: 256-517
Cow position: chr10:7367085-7366828 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 52

Conread position: 258-490
Cow position: chr10:35767378-35767152 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 161, 109

Conread position: 258-513
Cow position: chr10:9342038-9341780 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 47, 170

Conread position: 258-519
Cow position: chr10:43487411-43487669 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 191
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 163, 110

Conread position: 263-499
Cow position: chr10:27828036-27828263 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 104

Conread position: 263-502
Cow position: chr10:20568841-20569082 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 114, 36

Conread position: 263-512
Cow position: chr10:48259525-48259279 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 163, 41

Conread position: 263-513
Cow position: chr10:32174444-32174683 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 192
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 188, 36

Conread position: 263-519
Cow position: chr10:53083869-53084130 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 263-523
Cow position: chr10:37528898-37528644 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 158, 13

Conread position: 264-512
Cow position: chr10:4994849-4994613 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 265-505
Cow position: chr10:11032790-11032550 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 144, 56

Conread position: 265-516
Cow position: chr10:20446807-20447052 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 94

Conread position: 265-519
Cow position: chr10:27717131-27716884 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 190
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 182, 49

Conread position: 265-520
Cow position: chr10:24971889-24971653 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 183, 34

Conread position: 265-520
Cow position: chr10:30360237-30360478 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 188
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 142, 0

Conread position: 265-523
Cow position: chr10:21422447-21422195 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 43, 23

Conread position: 266-490
Cow position: chr10:24871596-24871818 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 57

Conread position: 266-518
Cow position: chr10:65803378-65803129 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 183, 114

Conread position: 266-523
Cow position: chr10:30523348-30523102 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 188
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 161, 33

Conread position: 267-509
Cow position: chr10:30352553-30352795 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 238

Conread position: 267-521
Cow position: chr10:37529560-37529304 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 0

Conread position: 269-490
Cow position: chr10:10720965-10720743 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 0

Conread position: 269-493
Cow position: chr10:20811886-20812111 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 179, 0

Conread position: 269-511
Cow position: chr10:22520451-22520214 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 20

Conread position: 269-523
Cow position: chr10:23506776-23506526 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 19, 127

Conread position: 270-518
Cow position: chr10:10148358-10148614 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 34, 68

Conread position: 275-523
Cow position: chr10:45370775-45371017 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 188
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 174, 24

Conread position: 276-502
Cow position: chr10:54936394-54936168 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 150, 100

Conread position: 277-492
Cow position: chr10:20398919-20399129 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 159, 22

Conread position: 278-501
Cow position: chr10:38942146-38942371 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 173
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 148, 80

Conread position: 287-522
Cow position: chr10:31027912-31027684 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 12

Conread position: 290-516
Cow position: chr10:63276123-63276348 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 137, 73

Conread position: 292-510
Cow position: chr10:9445279-9445064 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 156, 86

Conread position: 296-520
Cow position: chr10:16414850-16414625 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 22, 12

Conread position: 299-510
Cow position: chr10:67020368-67020576 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 149, 28

Conread position: 299-518
Cow position: chr10:35791674-35791888 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 150, 77

Conread position: 299-520
Cow position: chr10:17584288-17584079 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 151, 116

Conread position: 303-523
Cow position: chr10:29251907-29252128 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 0

Conread position: 309-524
Cow position: chr10:50559176-50558961 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 99, 56

Conread position: 321-518
Cow position: chr10:60722381-60722190 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 127, 50

Conread position: 322-523
Cow position: chr10:37415549-37415750 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 127, 95

Conread position: 326-512
Cow position: chr10:6435827-6436011 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 100, 50

Conread position: 338-520
Cow position: chr10:3362399-3362574 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 115, 0

Conread position: 341-492
Cow position: chr10:1996882-1996729 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 107, 0

Conread position: 353-523
Cow position: chr10:35779110-35778940 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 96, 163

Conread position: 363-518
Cow position: chr10:24780989-24781144 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 86, 141

Conread position: 370-500
Cow position: chr10:4148288-4148422 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 378-502
Cow position: chr10:28776171-28776292 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 17

Conread position: 378-519
Cow position: chr10:2613183-2613325 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 71, 139

Conread position: 378-519
Cow position: chr10:24756233-24756373 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 71, 127

Conread position: 378-520
Cow position: chr10:52695912-52695769 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 71, 0

Conread position: 385-518
Cow position: chr10:37295839-37295707 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 63, 21

Conread position: 388-490
Cow position: chr10:35856523-35856420 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 393-512
Cow position: chr10:56392443-56392322 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 58, 5

Show alignments to all cow chromosomes.