Cow genome map
Conread name: | rpigcf0_003920.y1 |
Conread position: | 242-488 |
Cow position: | chr11:22342114-22341868 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 165 |
Alignm E-value: | 9e-28 |
Alignm gaps (pig, cow): | 184, 16 |
Conread position: | 242-516 |
Cow position: | chr11:3704011-3704266 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 201 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 242-517 |
Cow position: | chr11:40818954-40818673 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 16 |
Conread position: | 242-518 |
Cow position: | chr11:35684808-35684529 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 16 |
Conread position: | 242-522 |
Cow position: | chr11:48271886-48272167 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 207, 16 |
Conread position: | 242-523 |
Cow position: | chr11:34962753-34963034 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 206 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 169, 16 |
Conread position: | 244-512 |
Cow position: | chr11:35148859-35149123 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 196 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 18, 70 |
Conread position: | 254-499 |
Cow position: | chr11:67931792-67931546 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 183 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 172, 16 |
Conread position: | 254-502 |
Cow position: | chr11:43524321-43524567 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 196 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 16, 97 |
Conread position: | 254-505 |
Cow position: | chr11:25319749-25320004 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 254-506 |
Cow position: | chr11:41986345-41986092 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 187 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 14, 126 |
Conread position: | 254-507 |
Cow position: | chr11:85764652-85764893 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 189 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 35, 115 |
Conread position: | 254-512 |
Cow position: | chr11:31900747-31901004 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 90 |
Conread position: | 254-519 |
Cow position: | chr11:6835229-6835497 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 202 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 194 |
Conread position: | 254-519 |
Cow position: | chr11:41239573-41239306 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 54 |
Conread position: | 254-520 |
Cow position: | chr11:17968877-17968618 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 117 |
Conread position: | 254-520 |
Cow position: | chr11:39115196-39115459 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 22 |
Conread position: | 254-520 |
Cow position: | chr11:56797037-56796776 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 184 |
Alignm E-value: | 9e-29 |
Alignm gaps (pig, cow): | 51, 88 |
Conread position: | 254-520 |
Cow position: | chr11:80923637-80923357 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 254-523 |
Cow position: | chr11:47165435-47165174 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 197 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 190, 50 |
Conread position: | 258-520 |
Cow position: | chr11:35579957-35580223 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 0 |
Conread position: | 258-524 |
Cow position: | chr11:43361095-43360813 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 199 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 63, 41 |
Conread position: | 263-510 |
Cow position: | chr11:77682890-77683123 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 178 |
Alignm E-value: | 9e-28 |
Alignm gaps (pig, cow): | 174, 51 |
Conread position: | 263-517 |
Cow position: | chr11:46398838-46399088 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 175 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 195, 36 |
Conread position: | 263-519 |
Cow position: | chr11:25165156-25165407 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 185, 42 |
Conread position: | 265-470 |
Cow position: | chr11:62151169-62150970 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 154 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 184, 113 |
Conread position: | 265-482 |
Cow position: | chr11:62490146-62490360 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 174 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 184, 127 |
Conread position: | 265-520 |
Cow position: | chr11:50153105-50152850 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 183, 34 |
Conread position: | 265-521 |
Cow position: | chr11:25386783-25387032 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 196 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 183, 72 |
Conread position: | 266-492 |
Cow position: | chr11:80824879-80825101 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 172 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 13, 36 |
Conread position: | 266-520 |
Cow position: | chr11:16251536-16251280 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 128 |
Conread position: | 267-482 |
Cow position: | chr11:38193866-38194082 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 161 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 181, 0 |
Conread position: | 267-506 |
Cow position: | chr11:23128821-23128592 (view UCSC Genome Browser custom track) |
Alignm length: | 241 |
Alignm identity: | 187 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 181, 27 |
Conread position: | 267-523 |
Cow position: | chr11:30110686-30110929 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 186 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 182, 41 |
Conread position: | 268-520 |
Cow position: | chr11:44036431-44036688 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 182, 171 |
Conread position: | 269-520 |
Cow position: | chr11:10213844-10213600 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 193 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 80, 39 |
Conread position: | 269-523 |
Cow position: | chr11:64638807-64638558 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 186 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 152, 98 |
Conread position: | 271-522 |
Cow position: | chr11:17192563-17192312 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 176 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 178, 105 |
Conread position: | 273-511 |
Cow position: | chr11:63157194-63156952 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 170 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 273-524 |
Cow position: | chr11:8428215-8428480 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 120 |
Conread position: | 276-490 |
Cow position: | chr11:75748159-75748369 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 165 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 151, 23 |
Conread position: | 276-509 |
Cow position: | chr11:55761603-55761825 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 177 |
Alignm E-value: | 9e-39 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 277-521 |
Cow position: | chr11:42793246-42793007 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 188 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 172, 17 |
Conread position: | 278-523 |
Cow position: | chr11:34830054-34829812 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 179 |
Alignm E-value: | 7e-37 |
Alignm gaps (pig, cow): | 66, 99 |
Conread position: | 278-523 |
Cow position: | chr11:71455513-71455760 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 180 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 134, 235 |
Conread position: | 279-510 |
Cow position: | chr11:11232728-11232497 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 180 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 26, 81 |
Conread position: | 281-474 |
Cow position: | chr11:85189655-85189462 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 145 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 281-521 |
Cow position: | chr11:50778098-50778338 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 225 |
Conread position: | 284-487 |
Cow position: | chr11:63482694-63482493 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 158 |
Alignm E-value: | 9e-39 |
Alignm gaps (pig, cow): | 143, 92 |
Conread position: | 284-502 |
Cow position: | chr11:25336807-25337024 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 168 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 142, 24 |
Conread position: | 285-523 |
Cow position: | chr11:36659082-36658852 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 167 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 28, 90 |
Conread position: | 287-502 |
Cow position: | chr11:59370749-59370960 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 163 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 161, 109 |
Conread position: | 290-501 |
Cow position: | chr11:70836630-70836432 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 157 |
Alignm E-value: | 9e-28 |
Alignm gaps (pig, cow): | 106, 63 |
Conread position: | 295-520 |
Cow position: | chr11:20238415-20238640 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 180 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 39, 109 |
Conread position: | 297-520 |
Cow position: | chr11:35154083-35153860 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 175 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 219 |
Conread position: | 298-520 |
Cow position: | chr11:16342496-16342265 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 187 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 88 |
Conread position: | 299-507 |
Cow position: | chr11:34120945-34121147 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 160 |
Alignm E-value: | 7e-37 |
Alignm gaps (pig, cow): | 149, 14 |
Conread position: | 299-514 |
Cow position: | chr11:49152700-49152912 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 157 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 123, 54 |
Conread position: | 308-511 |
Cow position: | chr11:41438469-41438263 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 157 |
Alignm E-value: | 7e-37 |
Alignm gaps (pig, cow): | 117, 78 |
Conread position: | 309-520 |
Cow position: | chr11:15016802-15017009 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 156 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 142, 69 |
Conread position: | 309-523 |
Cow position: | chr11:2917823-2917619 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 167 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 140, 50 |
Conread position: | 317-519 |
Cow position: | chr11:10687123-10686923 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 147 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 110, 129 |
Conread position: | 318-510 |
Cow position: | chr11:35668953-35668758 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 136 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 114, 0 |
Conread position: | 321-512 |
Cow position: | chr11:33348416-33348224 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 145 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 106, 55 |
Conread position: | 325-512 |
Cow position: | chr11:18591661-18591472 (view UCSC Genome Browser custom track) |
Alignm length: | 191 |
Alignm identity: | 151 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 123, 34 |
Conread position: | 325-519 |
Cow position: | chr11:66425118-66424916 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 147 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 29, 62 |
Conread position: | 326-511 |
Cow position: | chr11:29960078-29960252 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 142 |
Alignm E-value: | 9e-29 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 335-523 |
Cow position: | chr11:65762814-65762630 (view UCSC Genome Browser custom track) |
Alignm length: | 191 |
Alignm identity: | 153 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 113, 43 |
Conread position: | 338-511 |
Cow position: | chr11:11557954-11558124 (view UCSC Genome Browser custom track) |
Alignm length: | 175 |
Alignm identity: | 141 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 110, 40 |
Conread position: | 341-505 |
Cow position: | chr11:30866927-30867091 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 128 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 109, 83 |
Conread position: | 341-518 |
Cow position: | chr11:35723765-35723942 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 126 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 81, 99 |
Conread position: | 341-519 |
Cow position: | chr11:18372866-18373041 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 138 |
Alignm E-value: | 9e-29 |
Alignm gaps (pig, cow): | 85, 28 |
Conread position: | 341-523 |
Cow position: | chr11:34145128-34144947 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 135 |
Alignm E-value: | 9e-29 |
Alignm gaps (pig, cow): | 107, 85 |
Conread position: | 342-514 |
Cow position: | chr11:36238571-36238743 (view UCSC Genome Browser custom track) |
Alignm length: | 174 |
Alignm identity: | 131 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 106, 17 |
Conread position: | 368-511 |
Cow position: | chr11:34646404-34646544 (view UCSC Genome Browser custom track) |
Alignm length: | 145 |
Alignm identity: | 112 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 64, 104 |
Conread position: | 378-520 |
Cow position: | chr11:30954821-30954964 (view UCSC Genome Browser custom track) |
Alignm length: | 145 |
Alignm identity: | 119 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 53, 139 |
Conread position: | 380-520 |
Cow position: | chr11:30830791-30830650 (view UCSC Genome Browser custom track) |
Alignm length: | 142 |
Alignm identity: | 111 |
Alignm E-value: | 9e-28 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 384-513 |
Cow position: | chr11:16907214-16907086 (view UCSC Genome Browser custom track) |
Alignm length: | 131 |
Alignm identity: | 103 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 64, 43 |
Conread position: | 388-520 |
Cow position: | chr11:80556053-80556187 (view UCSC Genome Browser custom track) |
Alignm length: | 135 |
Alignm identity: | 103 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 58, 0 |
Conread position: | 400-518 |
Cow position: | chr11:70741131-70741012 (view UCSC Genome Browser custom track) |
Alignm length: | 120 |
Alignm identity: | 97 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 411-523 |
Cow position: | chr11:69075764-69075878 (view UCSC Genome Browser custom track) |
Alignm length: | 115 |
Alignm identity: | 92 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.