Cow genome map

Conread name: rpigcf0_003920.y1

Conread position: 242-488
Cow position: chr11:22342114-22341868 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 165
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 184, 16

Conread position: 242-516
Cow position: chr11:3704011-3704266 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 201
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 18, 0

Conread position: 242-517
Cow position: chr11:40818954-40818673 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 16

Conread position: 242-518
Cow position: chr11:35684808-35684529 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 16

Conread position: 242-522
Cow position: chr11:48271886-48272167 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 16

Conread position: 242-523
Cow position: chr11:34962753-34963034 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 169, 16

Conread position: 244-512
Cow position: chr11:35148859-35149123 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 18, 70

Conread position: 254-499
Cow position: chr11:67931792-67931546 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 183
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 172, 16

Conread position: 254-502
Cow position: chr11:43524321-43524567 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 16, 97

Conread position: 254-505
Cow position: chr11:25319749-25320004 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 254-506
Cow position: chr11:41986345-41986092 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 14, 126

Conread position: 254-507
Cow position: chr11:85764652-85764893 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 35, 115

Conread position: 254-512
Cow position: chr11:31900747-31901004 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 90

Conread position: 254-519
Cow position: chr11:6835229-6835497 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 194

Conread position: 254-519
Cow position: chr11:41239573-41239306 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 54

Conread position: 254-520
Cow position: chr11:17968877-17968618 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 117

Conread position: 254-520
Cow position: chr11:39115196-39115459 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 22

Conread position: 254-520
Cow position: chr11:56797037-56796776 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 184
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 51, 88

Conread position: 254-520
Cow position: chr11:80923637-80923357 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 254-523
Cow position: chr11:47165435-47165174 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 190, 50

Conread position: 258-520
Cow position: chr11:35579957-35580223 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 258-524
Cow position: chr11:43361095-43360813 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 63, 41

Conread position: 263-510
Cow position: chr11:77682890-77683123 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 174, 51

Conread position: 263-517
Cow position: chr11:46398838-46399088 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 175
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 195, 36

Conread position: 263-519
Cow position: chr11:25165156-25165407 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 42

Conread position: 265-470
Cow position: chr11:62151169-62150970 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 184, 113

Conread position: 265-482
Cow position: chr11:62490146-62490360 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 127

Conread position: 265-520
Cow position: chr11:50153105-50152850 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 34

Conread position: 265-521
Cow position: chr11:25386783-25387032 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 196
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 183, 72

Conread position: 266-492
Cow position: chr11:80824879-80825101 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 13, 36

Conread position: 266-520
Cow position: chr11:16251536-16251280 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 128

Conread position: 267-482
Cow position: chr11:38193866-38194082 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 181, 0

Conread position: 267-506
Cow position: chr11:23128821-23128592 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 181, 27

Conread position: 267-523
Cow position: chr11:30110686-30110929 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 186
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 182, 41

Conread position: 268-520
Cow position: chr11:44036431-44036688 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 171

Conread position: 269-520
Cow position: chr11:10213844-10213600 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 80, 39

Conread position: 269-523
Cow position: chr11:64638807-64638558 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 152, 98

Conread position: 271-522
Cow position: chr11:17192563-17192312 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 178, 105

Conread position: 273-511
Cow position: chr11:63157194-63156952 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 32, 0

Conread position: 273-524
Cow position: chr11:8428215-8428480 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 120

Conread position: 276-490
Cow position: chr11:75748159-75748369 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 151, 23

Conread position: 276-509
Cow position: chr11:55761603-55761825 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 23, 0

Conread position: 277-521
Cow position: chr11:42793246-42793007 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 17

Conread position: 278-523
Cow position: chr11:34830054-34829812 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 66, 99

Conread position: 278-523
Cow position: chr11:71455513-71455760 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 134, 235

Conread position: 279-510
Cow position: chr11:11232728-11232497 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 26, 81

Conread position: 281-474
Cow position: chr11:85189655-85189462 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 281-521
Cow position: chr11:50778098-50778338 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 225

Conread position: 284-487
Cow position: chr11:63482694-63482493 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 143, 92

Conread position: 284-502
Cow position: chr11:25336807-25337024 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 168
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 142, 24

Conread position: 285-523
Cow position: chr11:36659082-36658852 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 90

Conread position: 287-502
Cow position: chr11:59370749-59370960 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 161, 109

Conread position: 290-501
Cow position: chr11:70836630-70836432 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 106, 63

Conread position: 295-520
Cow position: chr11:20238415-20238640 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 180
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 39, 109

Conread position: 297-520
Cow position: chr11:35154083-35153860 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 219

Conread position: 298-520
Cow position: chr11:16342496-16342265 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 88

Conread position: 299-507
Cow position: chr11:34120945-34121147 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 160
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 149, 14

Conread position: 299-514
Cow position: chr11:49152700-49152912 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 123, 54

Conread position: 308-511
Cow position: chr11:41438469-41438263 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 117, 78

Conread position: 309-520
Cow position: chr11:15016802-15017009 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 142, 69

Conread position: 309-523
Cow position: chr11:2917823-2917619 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 140, 50

Conread position: 317-519
Cow position: chr11:10687123-10686923 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 110, 129

Conread position: 318-510
Cow position: chr11:35668953-35668758 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 136
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 114, 0

Conread position: 321-512
Cow position: chr11:33348416-33348224 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 106, 55

Conread position: 325-512
Cow position: chr11:18591661-18591472 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 151
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 123, 34

Conread position: 325-519
Cow position: chr11:66425118-66424916 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 62

Conread position: 326-511
Cow position: chr11:29960078-29960252 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 335-523
Cow position: chr11:65762814-65762630 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 113, 43

Conread position: 338-511
Cow position: chr11:11557954-11558124 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 141
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 110, 40

Conread position: 341-505
Cow position: chr11:30866927-30867091 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 109, 83

Conread position: 341-518
Cow position: chr11:35723765-35723942 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 81, 99

Conread position: 341-519
Cow position: chr11:18372866-18373041 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 85, 28

Conread position: 341-523
Cow position: chr11:34145128-34144947 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 107, 85

Conread position: 342-514
Cow position: chr11:36238571-36238743 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 106, 17

Conread position: 368-511
Cow position: chr11:34646404-34646544 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 64, 104

Conread position: 378-520
Cow position: chr11:30954821-30954964 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 53, 139

Conread position: 380-520
Cow position: chr11:30830791-30830650 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 68, 0

Conread position: 384-513
Cow position: chr11:16907214-16907086 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 64, 43

Conread position: 388-520
Cow position: chr11:80556053-80556187 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 400-518
Cow position: chr11:70741131-70741012 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 411-523
Cow position: chr11:69075764-69075878 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Show alignments to all cow chromosomes.