Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 179-523 |
| Cow position: | chr12:44621964-44622301 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 238-492 |
| Cow position: | chr12:3578943-3579201 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 66 |
| Conread position: | 242-497 |
| Cow position: | chr12:22516065-22515813 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 184, 16 |
| Conread position: | 242-509 |
| Cow position: | chr12:41979628-41979364 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 194, 16 |
| Conread position: | 251-474 |
| Cow position: | chr12:37994044-37993824 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 197, 25 |
| Conread position: | 253-506 |
| Cow position: | chr12:6489295-6489059 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 254-454 |
| Cow position: | chr12:45160830-45160625 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 254-499 |
| Cow position: | chr12:19508890-19508641 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 254-511 |
| Cow position: | chr12:17007878-17008140 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 254-512 |
| Cow position: | chr12:20326453-20326713 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 59 |
| Conread position: | 254-518 |
| Cow position: | chr12:18123366-18123620 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 254-520 |
| Cow position: | chr12:37770550-37770820 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 149 |
| Conread position: | 254-523 |
| Cow position: | chr12:25561050-25561316 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 258-506 |
| Cow position: | chr12:30596149-30596400 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 90, 96 |
| Conread position: | 263-507 |
| Cow position: | chr12:45820666-45820436 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 263-508 |
| Cow position: | chr12:33457841-33458078 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 185, 16 |
| Conread position: | 264-507 |
| Cow position: | chr12:4008591-4008347 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 266-510 |
| Cow position: | chr12:15530759-15530994 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 183, 33 |
| Conread position: | 266-520 |
| Cow position: | chr12:5632180-5631936 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 244, 112 |
| Conread position: | 266-520 |
| Cow position: | chr12:11056570-11056818 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 266-521 |
| Cow position: | chr12:28812257-28812508 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 181, 211 |
| Conread position: | 266-523 |
| Cow position: | chr12:8869188-8868929 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 267-523 |
| Cow position: | chr12:6720017-6720271 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 26 |
| Conread position: | 276-505 |
| Cow position: | chr12:20777225-20776993 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 122, 23 |
| Conread position: | 276-508 |
| Cow position: | chr12:40270382-40270159 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 146, 74 |
| Conread position: | 276-513 |
| Cow position: | chr12:9710500-9710271 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 150, 78 |
| Conread position: | 276-520 |
| Cow position: | chr12:5905761-5905999 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 92 |
| Conread position: | 277-501 |
| Cow position: | chr12:26223279-26223063 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 68, 7 |
| Conread position: | 279-523 |
| Cow position: | chr12:6164322-6164076 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 291-516 |
| Cow position: | chr12:25320642-25320862 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 160, 107 |
| Conread position: | 302-512 |
| Cow position: | chr12:25177864-25177645 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 321-509 |
| Cow position: | chr12:23797852-23798037 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 104 |
| Conread position: | 322-512 |
| Cow position: | chr12:28471390-28471576 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 328-520 |
| Cow position: | chr12:29770817-29770629 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 121, 40 |
| Conread position: | 330-523 |
| Cow position: | chr12:3906226-3906420 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 100, 187 |
| Conread position: | 333-510 |
| Cow position: | chr12:4809066-4809243 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 334-523 |
| Cow position: | chr12:30476239-30476428 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 182 |
| Conread position: | 335-522 |
| Cow position: | chr12:35669703-35669526 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 339-482 |
| Cow position: | chr12:15162916-15163057 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 5, 38 |
| Conread position: | 339-523 |
| Cow position: | chr12:27037681-27037504 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 341-505 |
| Cow position: | chr12:38454687-38454840 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 345-512 |
| Cow position: | chr12:15763137-15762970 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 347-512 |
| Cow position: | chr12:18021368-18021533 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 80, 45 |
Show alignments to all cow chromosomes.