Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 203-518 |
| Cow position: | chr13:23960487-23960810 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 70 |
| Conread position: | 220-520 |
| Cow position: | chr13:24586347-24586046 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 230-506 |
| Cow position: | chr13:54702480-54702203 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 90 |
| Conread position: | 233-520 |
| Cow position: | chr13:17021435-17021730 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 25 |
| Conread position: | 236-396 |
| Cow position: | chr13:61253448-61253287 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 238-506 |
| Cow position: | chr13:35660037-35659769 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 154 |
| Conread position: | 238-512 |
| Cow position: | chr13:27524978-27525257 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 241-519 |
| Cow position: | chr13:41807052-41806777 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 17 |
| Conread position: | 242-502 |
| Cow position: | chr13:18835462-18835212 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 242-502 |
| Cow position: | chr13:61976689-61976945 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 16 |
| Conread position: | 242-509 |
| Cow position: | chr13:25434853-25435107 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 242-520 |
| Cow position: | chr13:32717595-32717872 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 249-500 |
| Cow position: | chr13:20784858-20784616 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 251-490 |
| Cow position: | chr13:42200885-42200651 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 251-511 |
| Cow position: | chr13:17800339-17800084 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 7 |
| Conread position: | 251-520 |
| Cow position: | chr13:971627-971894 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 130 |
| Conread position: | 251-520 |
| Cow position: | chr13:25817780-25817530 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 251-520 |
| Cow position: | chr13:45022940-45023208 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 254-510 |
| Cow position: | chr13:60690451-60690715 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 254-512 |
| Cow position: | chr13:34375523-34375278 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 254-513 |
| Cow position: | chr13:15869385-15869131 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 24, 98 |
| Conread position: | 254-513 |
| Cow position: | chr13:51940997-51940744 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 254-516 |
| Cow position: | chr13:52922354-52922098 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 8, 96 |
| Conread position: | 254-519 |
| Cow position: | chr13:21235421-21235684 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 16 |
| Conread position: | 254-520 |
| Cow position: | chr13:19882771-19883033 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 45 |
| Conread position: | 255-502 |
| Cow position: | chr13:55295359-55295603 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 255-517 |
| Cow position: | chr13:15167083-15166826 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 12, 63 |
| Conread position: | 258-502 |
| Cow position: | chr13:7257662-7257416 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 168, 136 |
| Conread position: | 258-505 |
| Cow position: | chr13:20863760-20863997 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 191, 41 |
| Conread position: | 258-519 |
| Cow position: | chr13:46324524-46324784 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 10, 106 |
| Conread position: | 260-511 |
| Cow position: | chr13:48037879-48037633 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 188, 99 |
| Conread position: | 260-523 |
| Cow position: | chr13:15288666-15288924 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 261-507 |
| Cow position: | chr13:8607260-8607503 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 265-516 |
| Cow position: | chr13:152196-151966 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 183, 29 |
| Conread position: | 265-523 |
| Cow position: | chr13:311686-311428 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 265-523 |
| Cow position: | chr13:3970376-3970633 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 157, 240 |
| Conread position: | 267-490 |
| Cow position: | chr13:16343938-16343718 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 181, 63 |
| Conread position: | 270-523 |
| Cow position: | chr13:24715486-24715243 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 271-508 |
| Cow position: | chr13:52251538-52251787 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 77 |
| Conread position: | 275-512 |
| Cow position: | chr13:55673961-55674202 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 276-506 |
| Cow position: | chr13:53566839-53566611 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 23 |
| Conread position: | 277-490 |
| Cow position: | chr13:53536064-53536274 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 171, 28 |
| Conread position: | 277-522 |
| Cow position: | chr13:46636889-46637123 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 65 |
| Conread position: | 277-523 |
| Cow position: | chr13:17114138-17114378 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 234, 58 |
| Conread position: | 278-509 |
| Cow position: | chr13:25261566-25261795 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 27, 121 |
| Conread position: | 283-518 |
| Cow position: | chr13:17816007-17815774 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 106 |
| Conread position: | 283-520 |
| Cow position: | chr13:55315953-55316187 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 166, 80 |
| Conread position: | 284-512 |
| Cow position: | chr13:18551683-18551454 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 142, 100 |
| Conread position: | 284-524 |
| Cow position: | chr13:9891933-9891696 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 168, 85 |
| Conread position: | 287-501 |
| Cow position: | chr13:54093972-54093765 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 140, 95 |
| Conread position: | 287-507 |
| Cow position: | chr13:47963969-47964180 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 287-520 |
| Cow position: | chr13:24369817-24369585 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 166 |
| Conread position: | 290-490 |
| Cow position: | chr13:11096401-11096206 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 137, 90 |
| Conread position: | 290-512 |
| Cow position: | chr13:12207272-12207054 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 161, 84 |
| Conread position: | 298-471 |
| Cow position: | chr13:11954892-11955058 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 150, 72 |
| Conread position: | 300-516 |
| Cow position: | chr13:52199308-52199093 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 152, 63 |
| Conread position: | 300-520 |
| Cow position: | chr13:18172559-18172340 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 82 |
| Conread position: | 305-491 |
| Cow position: | chr13:51014966-51015156 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 308-518 |
| Cow position: | chr13:19022489-19022279 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 140, 60 |
| Conread position: | 318-512 |
| Cow position: | chr13:61990133-61990329 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 85 |
| Conread position: | 321-490 |
| Cow position: | chr13:24230411-24230241 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 321-512 |
| Cow position: | chr13:52749290-52749468 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 341-522 |
| Cow position: | chr13:5758167-5758340 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 107, 35 |
| Conread position: | 351-517 |
| Cow position: | chr13:7790182-7790021 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 97, 27 |
| Conread position: | 354-520 |
| Cow position: | chr13:20264746-20264913 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 372-523 |
| Cow position: | chr13:54388870-54389020 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 374-502 |
| Cow position: | chr13:18696991-18696863 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 75, 50 |
| Conread position: | 374-523 |
| Cow position: | chr13:17568950-17569102 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 378-510 |
| Cow position: | chr13:18058104-18058233 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 71, 21 |
Show alignments to all cow chromosomes.