Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 231-466 |
| Cow position: | chr15:22532053-22531817 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 153, 68 |
| Conread position: | 231-512 |
| Cow position: | chr15:40343642-40343362 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 173, 149 |
| Conread position: | 238-488 |
| Cow position: | chr15:45217208-45216958 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 241-514 |
| Cow position: | chr15:11362799-11363067 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 127 |
| Conread position: | 251-492 |
| Cow position: | chr15:50302557-50302317 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 251-501 |
| Cow position: | chr15:21388796-21389044 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 7 |
| Conread position: | 251-521 |
| Cow position: | chr15:10456644-10456908 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 252-524 |
| Cow position: | chr15:15707750-15708006 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 196, 25 |
| Conread position: | 253-492 |
| Cow position: | chr15:25208390-25208629 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 204 |
| Conread position: | 253-497 |
| Cow position: | chr15:51822515-51822270 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 253-517 |
| Cow position: | chr15:34104639-34104378 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 128 |
| Conread position: | 254-485 |
| Cow position: | chr15:16112774-16112540 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 16, 51 |
| Conread position: | 254-502 |
| Cow position: | chr15:10336123-10335880 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 254-502 |
| Cow position: | chr15:22532610-22532361 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 254-511 |
| Cow position: | chr15:17233559-17233304 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 168, 33 |
| Conread position: | 254-513 |
| Cow position: | chr15:17869922-17870173 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 15, 107 |
| Conread position: | 254-516 |
| Cow position: | chr15:13515741-13515477 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 254-524 |
| Cow position: | chr15:21832052-21832328 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 141 |
| Conread position: | 255-501 |
| Cow position: | chr15:40009284-40009526 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 147, 20 |
| Conread position: | 255-523 |
| Cow position: | chr15:3699913-3700184 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 256-482 |
| Cow position: | chr15:33679061-33678844 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 256-513 |
| Cow position: | chr15:9871044-9871304 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 43 |
| Conread position: | 258-516 |
| Cow position: | chr15:28126684-28126939 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 169, 120 |
| Conread position: | 258-520 |
| Cow position: | chr15:23486808-23487060 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 190, 89 |
| Conread position: | 260-505 |
| Cow position: | chr15:14322700-14322934 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 260-523 |
| Cow position: | chr15:22938970-22939220 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 265-508 |
| Cow position: | chr15:30047178-30047425 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 265-512 |
| Cow position: | chr15:43030664-43030916 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 82, 67 |
| Conread position: | 266-523 |
| Cow position: | chr15:14871104-14870845 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 194 |
| Conread position: | 268-516 |
| Cow position: | chr15:42788808-42789040 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 226, 31 |
| Conread position: | 276-501 |
| Cow position: | chr15:1083033-1083251 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 176, 23 |
| Conread position: | 276-514 |
| Cow position: | chr15:11658218-11658457 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 277-518 |
| Cow position: | chr15:5730283-5730041 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 171, 86 |
| Conread position: | 279-511 |
| Cow position: | chr15:2144788-2145016 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 171, 19 |
| Conread position: | 283-519 |
| Cow position: | chr15:15881273-15881035 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 140, 22 |
| Conread position: | 287-512 |
| Cow position: | chr15:47822135-47821924 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 165, 31 |
| Conread position: | 290-490 |
| Cow position: | chr15:1128322-1128130 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 290-510 |
| Cow position: | chr15:26158285-26158501 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 158, 9 |
| Conread position: | 296-507 |
| Cow position: | chr15:12304968-12304759 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 153, 80 |
| Conread position: | 298-523 |
| Cow position: | chr15:47105362-47105146 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 299-523 |
| Cow position: | chr15:50322919-50322699 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 149, 84 |
| Conread position: | 308-510 |
| Cow position: | chr15:12723401-12723200 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 119, 58 |
| Conread position: | 309-512 |
| Cow position: | chr15:20390964-20391162 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 139, 84 |
| Conread position: | 319-523 |
| Cow position: | chr15:24305174-24305377 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 185, 105 |
| Conread position: | 322-520 |
| Cow position: | chr15:23696616-23696803 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 46 |
| Conread position: | 333-502 |
| Cow position: | chr15:5420592-5420757 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 333-523 |
| Cow position: | chr15:33643376-33643195 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 166, 35 |
| Conread position: | 341-502 |
| Cow position: | chr15:30985497-30985664 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 50 |
| Conread position: | 341-516 |
| Cow position: | chr15:25907195-25907026 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 89 |
| Conread position: | 343-516 |
| Cow position: | chr15:16261597-16261420 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 373-522 |
| Cow position: | chr15:47592406-47592556 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 374-523 |
| Cow position: | chr15:8354295-8354146 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 393-506 |
| Cow position: | chr15:9879162-9879276 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
Show alignments to all cow chromosomes.