Cow genome map


           Conread name:
           rpigcf0_003920.y1
        

               Conread position:
               75-521
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               297
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               17, 26
               

               Conread position:
               225-523
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               217
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               13, 80
               

               Conread position:
               242-502
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 16
               

               Conread position:
               242-502
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 16
               

               Conread position:
               242-505
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 61
               

               Conread position:
               242-516
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 16
               

               Conread position:
               242-523
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 16
               

               Conread position:
               242-523
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               102, 16
               

               Conread position:
               250-513
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               177, 6
               

               Conread position:
               251-513
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 7
               

               Conread position:
               251-519
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               58, 7
               

               Conread position:
               251-522
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               252-500
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               18, 97
               

               Conread position:
               252-523
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               194
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               196, 47
               

               Conread position:
               253-522
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               11, 132
               

               Conread position:
               253-523
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 126
               

               Conread position:
               254-499
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               194
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               14, 126
               

               Conread position:
               254-501
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 45
               

               Conread position:
               254-502
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 153
               

               Conread position:
               254-502
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 48
               

               Conread position:
               254-503
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 48
               

               Conread position:
               254-520
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 103
               

               Conread position:
               254-522
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               16, 132
               

               Conread position:
               254-523
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               14, 124
               

               Conread position:
               254-524
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               198
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               44, 122
               

               Conread position:
               255-523
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               15, 120
               

               Conread position:
               256-491
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               187
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               12, 46
               

               Conread position:
               258-510
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               169, 41
               

               Conread position:
               258-513
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 151
               

               Conread position:
               258-523
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               190, 46
               

               Conread position:
               258-523
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               260-509
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 7
               

               Conread position:
               260-519
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               197
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               166, 81
               

               Conread position:
               260-523
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               9, 53
               

               Conread position:
               262-513
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 37
               

               Conread position:
               263-487
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               159, 28
               

               Conread position:
               263-519
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               167, 36
               

               Conread position:
               265-490
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 34
               

               Conread position:
               265-510
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 133
               

               Conread position:
               265-520
               

               Cow position:
               
               

               Alignm length:
               257
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 124
               

               Conread position:
               267-466
               

               Cow position:
               
               

               Alignm length:
               200
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               267-490
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               181, 104
               

               Conread position:
               267-523
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               182, 37
               

               Conread position:
               268-523
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               154, 120
               

               Conread position:
               269-512
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               183, 30
               

               Conread position:
               269-517
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 176
               

               Conread position:
               269-523
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               158, 109
               

               Conread position:
               273-512
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               150, 26
               

               Conread position:
               276-523
               

               Cow position:
               
               

               Alignm length:
               249
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               29, 92
               

               Conread position:
               278-523
               

               Cow position:
               
               

               Alignm length:
               249
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               48, 38
               

               Conread position:
               278-523
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 21
               

               Conread position:
               283-523
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               290-512
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               158, 0
               

               Conread position:
               294-507
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 173
               

               Conread position:
               295-523
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               75, 109
               

               Conread position:
               296-522
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               126, 17
               

               Conread position:
               298-502
               

               Cow position:
               
               

               Alignm length:
               206
               

               Alignm identity:
               163
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 0
               

               Conread position:
               299-509
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               45, 76
               

               Conread position:
               299-511
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               20, 79
               

               Conread position:
               299-512
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               83, 32
               

               Conread position:
               308-510
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               163
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               309-522
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               139, 69
               

               Conread position:
               309-523
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               92, 63
               

               Conread position:
               315-517
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               134, 61
               

               Conread position:
               315-523
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               136, 201
               

               Conread position:
               322-512
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               327-501
               

               Cow position:
               
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               122, 44
               

               Conread position:
               334-506
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               114, 40
               

               Conread position:
               341-510
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               83, 37
               

               Conread position:
               341-516
               

               Cow position:
               
               

               Alignm length:
               181
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               82, 72
               

               Conread position:
               344-519
               

               Cow position:
               
               

               Alignm length:
               179
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               83, 54
               

               Conread position:
               345-511
               

               Cow position:
               
               

               Alignm length:
               171
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               346-512
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               7, 32
               

               Conread position:
               356-492
               

               Cow position:
               
               

               Alignm length:
               137
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               363-523
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               368-513
               

               Cow position:
               
               

               Alignm length:
               147
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               81, 127
               

               Conread position:
               383-522
               

               Cow position:
               
               

               Alignm length:
               141
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               120, 69
               
Show alignments to all cow chromosomes.