Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 75-521 |
| Cow position: | chr16:14124694-14125128 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 297 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 225-523 |
| Cow position: | chr16:48385716-48385414 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 13, 80 |
| Conread position: | 242-502 |
| Cow position: | chr16:49126474-49126223 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 16 |
| Conread position: | 242-502 |
| Cow position: | chr16:49141849-49141599 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 16 |
| Conread position: | 242-505 |
| Cow position: | chr16:24147859-24148126 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 242-516 |
| Cow position: | chr16:9973793-9973519 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 242-523 |
| Cow position: | chr16:4857385-4857114 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 242-523 |
| Cow position: | chr16:51500641-51500917 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 102, 16 |
| Conread position: | 250-513 |
| Cow position: | chr16:23737901-23738154 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 177, 6 |
| Conread position: | 251-513 |
| Cow position: | chr16:48096045-48095785 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 7 |
| Conread position: | 251-519 |
| Cow position: | chr16:46752561-46752290 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 251-522 |
| Cow position: | chr16:39385115-39385394 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 252-500 |
| Cow position: | chr16:32970353-32970115 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 252-523 |
| Cow position: | chr16:15960576-15960305 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 196, 47 |
| Conread position: | 253-522 |
| Cow position: | chr16:3614464-3614731 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 11, 132 |
| Conread position: | 253-523 |
| Cow position: | chr16:819967-820235 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 126 |
| Conread position: | 254-499 |
| Cow position: | chr16:30290033-30290282 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 14, 126 |
| Conread position: | 254-501 |
| Cow position: | chr16:30939454-30939699 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 45 |
| Conread position: | 254-502 |
| Cow position: | chr16:23483005-23483259 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 153 |
| Conread position: | 254-502 |
| Cow position: | chr16:42079122-42078875 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-503 |
| Cow position: | chr16:51578702-51578451 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 254-520 |
| Cow position: | chr16:48340972-48340712 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 103 |
| Conread position: | 254-522 |
| Cow position: | chr16:33482155-33482425 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 16, 132 |
| Conread position: | 254-523 |
| Cow position: | chr16:42339921-42340181 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 14, 124 |
| Conread position: | 254-524 |
| Cow position: | chr16:49230053-49229786 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 44, 122 |
| Conread position: | 255-523 |
| Cow position: | chr16:9932874-9933146 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 256-491 |
| Cow position: | chr16:25170110-25170348 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 12, 46 |
| Conread position: | 258-510 |
| Cow position: | chr16:53509264-53509009 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 169, 41 |
| Conread position: | 258-513 |
| Cow position: | chr16:35937057-35937316 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 151 |
| Conread position: | 258-523 |
| Cow position: | chr16:7504824-7505074 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 190, 46 |
| Conread position: | 258-523 |
| Cow position: | chr16:45731648-45731402 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 260-509 |
| Cow position: | chr16:38709099-38708855 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 7 |
| Conread position: | 260-519 |
| Cow position: | chr16:21450574-21450828 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 166, 81 |
| Conread position: | 260-523 |
| Cow position: | chr16:52835154-52834903 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 9, 53 |
| Conread position: | 262-513 |
| Cow position: | chr16:45139398-45139652 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 37 |
| Conread position: | 263-487 |
| Cow position: | chr16:39243797-39243576 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 159, 28 |
| Conread position: | 263-519 |
| Cow position: | chr16:4144795-4145047 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 167, 36 |
| Conread position: | 265-490 |
| Cow position: | chr16:32132260-32132479 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 34 |
| Conread position: | 265-510 |
| Cow position: | chr16:29608249-29608493 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 133 |
| Conread position: | 265-520 |
| Cow position: | chr16:48494825-48494572 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 124 |
| Conread position: | 267-466 |
| Cow position: | chr16:53086591-53086401 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 267-490 |
| Cow position: | chr16:18205704-18205914 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 181, 104 |
| Conread position: | 267-523 |
| Cow position: | chr16:7075652-7075900 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 182, 37 |
| Conread position: | 268-523 |
| Cow position: | chr16:39705106-39704854 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 154, 120 |
| Conread position: | 269-512 |
| Cow position: | chr16:25287955-25287711 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 183, 30 |
| Conread position: | 269-517 |
| Cow position: | chr16:50417953-50417705 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 176 |
| Conread position: | 269-523 |
| Cow position: | chr16:4372761-4372508 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 158, 109 |
| Conread position: | 273-512 |
| Cow position: | chr16:35187994-35188233 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 150, 26 |
| Conread position: | 276-523 |
| Cow position: | chr16:14242117-14242356 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 29, 92 |
| Conread position: | 278-523 |
| Cow position: | chr16:9790887-9790646 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 48, 38 |
| Conread position: | 278-523 |
| Cow position: | chr16:26649889-26649644 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 21 |
| Conread position: | 283-523 |
| Cow position: | chr16:33704547-33704793 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 290-512 |
| Cow position: | chr16:29557875-29557650 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 294-507 |
| Cow position: | chr16:35168485-35168696 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 173 |
| Conread position: | 295-523 |
| Cow position: | chr16:36203854-36203639 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 75, 109 |
| Conread position: | 296-522 |
| Cow position: | chr16:18499111-18498888 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 298-502 |
| Cow position: | chr16:32781126-32781331 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 299-509 |
| Cow position: | chr16:41608373-41608585 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 45, 76 |
| Conread position: | 299-511 |
| Cow position: | chr16:50382965-50383178 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 20, 79 |
| Conread position: | 299-512 |
| Cow position: | chr16:8812322-8812107 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 83, 32 |
| Conread position: | 308-510 |
| Cow position: | chr16:11105323-11105526 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 309-522 |
| Cow position: | chr16:20634103-20633892 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 139, 69 |
| Conread position: | 309-523 |
| Cow position: | chr16:50288932-50289137 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 63 |
| Conread position: | 315-517 |
| Cow position: | chr16:26156354-26156156 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 134, 61 |
| Conread position: | 315-523 |
| Cow position: | chr16:8323205-8322997 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 136, 201 |
| Conread position: | 322-512 |
| Cow position: | chr16:12060201-12060397 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 327-501 |
| Cow position: | chr16:8069025-8068856 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 122, 44 |
| Conread position: | 334-506 |
| Cow position: | chr16:52275330-52275161 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 114, 40 |
| Conread position: | 341-510 |
| Cow position: | chr16:17626737-17626904 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 37 |
| Conread position: | 341-516 |
| Cow position: | chr16:41697284-41697108 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 82, 72 |
| Conread position: | 344-519 |
| Cow position: | chr16:33229883-33230057 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 54 |
| Conread position: | 345-511 |
| Cow position: | chr16:17982335-17982165 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 346-512 |
| Cow position: | chr16:53037812-53037649 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 32 |
| Conread position: | 356-492 |
| Cow position: | chr16:5836404-5836533 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 363-523 |
| Cow position: | chr16:31348942-31348779 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 368-513 |
| Cow position: | chr16:10592265-10592410 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 81, 127 |
| Conread position: | 383-522 |
| Cow position: | chr16:25386826-25386961 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 120, 69 |
Show alignments to all cow chromosomes.