Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 238-511 |
| Cow position: | chr17:9697957-9697684 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 94 |
| Conread position: | 240-518 |
| Cow position: | chr17:18495759-18495496 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 242-488 |
| Cow position: | chr17:31243-31490 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 180, 17 |
| Conread position: | 242-510 |
| Cow position: | chr17:18109336-18109071 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 14 |
| Conread position: | 242-511 |
| Cow position: | chr17:3503328-3503596 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 15, 136 |
| Conread position: | 242-512 |
| Cow position: | chr17:21004081-21003812 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 18 |
| Conread position: | 242-522 |
| Cow position: | chr17:42347471-42347200 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 242-523 |
| Cow position: | chr17:20993290-20993012 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 246-507 |
| Cow position: | chr17:20780260-20780522 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 253-510 |
| Cow position: | chr17:923640-923897 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 168, 46 |
| Conread position: | 253-517 |
| Cow position: | chr17:20233984-20234250 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 15, 102 |
| Conread position: | 254-492 |
| Cow position: | chr17:20022759-20022520 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 254-502 |
| Cow position: | chr17:21017554-21017803 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 179 |
| Conread position: | 254-505 |
| Cow position: | chr17:19455538-19455302 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 254-507 |
| Cow position: | chr17:1295813-1295558 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 254-507 |
| Cow position: | chr17:21620472-21620730 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 254-510 |
| Cow position: | chr17:9117401-9117662 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 254-511 |
| Cow position: | chr17:5255615-5255355 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 254-512 |
| Cow position: | chr17:25542054-25541804 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 254-513 |
| Cow position: | chr17:32989251-32989494 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 254-513 |
| Cow position: | chr17:32993855-32993606 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 254-514 |
| Cow position: | chr17:20889133-20889393 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-522 |
| Cow position: | chr17:10473593-10473858 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 73 |
| Conread position: | 258-512 |
| Cow position: | chr17:41029717-41029971 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 258-519 |
| Cow position: | chr17:32027697-32027432 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 262 |
| Conread position: | 258-520 |
| Cow position: | chr17:11664823-11664563 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 41 |
| Conread position: | 258-520 |
| Cow position: | chr17:25900964-25901222 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 41 |
| Conread position: | 258-523 |
| Cow position: | chr17:29715421-29715173 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 262-516 |
| Cow position: | chr17:5896141-5895891 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 165, 37 |
| Conread position: | 263-523 |
| Cow position: | chr17:15333940-15333685 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 185, 33 |
| Conread position: | 265-502 |
| Cow position: | chr17:3306640-3306873 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 34 |
| Conread position: | 265-507 |
| Cow position: | chr17:21959907-21959674 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 159, 34 |
| Conread position: | 266-498 |
| Cow position: | chr17:18490306-18490540 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 160, 85 |
| Conread position: | 266-507 |
| Cow position: | chr17:4824274-4824507 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 182, 33 |
| Conread position: | 266-510 |
| Cow position: | chr17:3042252-3042488 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 191, 110 |
| Conread position: | 266-510 |
| Cow position: | chr17:26084808-26085051 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 183, 33 |
| Conread position: | 267-490 |
| Cow position: | chr17:8690666-8690447 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 267-512 |
| Cow position: | chr17:36331192-36330941 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 171, 74 |
| Conread position: | 267-516 |
| Cow position: | chr17:24787247-24787000 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 90 |
| Conread position: | 267-519 |
| Cow position: | chr17:24587392-24587645 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 268-512 |
| Cow position: | chr17:27047938-27048176 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 159, 69 |
| Conread position: | 269-496 |
| Cow position: | chr17:37163751-37163520 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 178 |
| Conread position: | 269-516 |
| Cow position: | chr17:1410465-1410215 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 30 |
| Conread position: | 271-517 |
| Cow position: | chr17:8861403-8861161 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 273-519 |
| Cow position: | chr17:20835373-20835620 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 276-492 |
| Cow position: | chr17:25128566-25128352 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 57 |
| Conread position: | 276-523 |
| Cow position: | chr17:13922256-13922506 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 243 |
| Conread position: | 277-515 |
| Cow position: | chr17:25097247-25097484 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 175, 22 |
| Conread position: | 277-523 |
| Cow position: | chr17:33933953-33933720 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 172, 94 |
| Conread position: | 278-515 |
| Cow position: | chr17:24580514-24580275 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 171, 21 |
| Conread position: | 279-523 |
| Cow position: | chr17:32472005-32471756 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 151, 20 |
| Conread position: | 281-502 |
| Cow position: | chr17:1275307-1275531 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 282-514 |
| Cow position: | chr17:31231325-31231095 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 167, 71 |
| Conread position: | 284-499 |
| Cow position: | chr17:10446707-10446922 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 142, 163 |
| Conread position: | 285-516 |
| Cow position: | chr17:21243994-21243764 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 14 |
| Conread position: | 290-523 |
| Cow position: | chr17:21628279-21628504 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 135, 86 |
| Conread position: | 295-513 |
| Cow position: | chr17:24490323-24490545 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 299-490 |
| Cow position: | chr17:35311227-35311421 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 85, 151 |
| Conread position: | 299-505 |
| Cow position: | chr17:12447593-12447392 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 301-513 |
| Cow position: | chr17:4436423-4436214 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 149, 67 |
| Conread position: | 303-492 |
| Cow position: | chr17:12536658-12536472 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 146, 75 |
| Conread position: | 309-512 |
| Cow position: | chr17:1063005-1063196 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 309-516 |
| Cow position: | chr17:908562-908764 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 69 |
| Conread position: | 316-512 |
| Cow position: | chr17:32273861-32273668 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 133, 46 |
| Conread position: | 318-512 |
| Cow position: | chr17:12590988-12591185 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 327-502 |
| Cow position: | chr17:10510828-10510652 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 346-510 |
| Cow position: | chr17:6328961-6329128 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 358-508 |
| Cow position: | chr17:26233965-26233815 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 89 |
| Conread position: | 382-512 |
| Cow position: | chr17:35339030-35338900 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 123 |
| Conread position: | 386-512 |
| Cow position: | chr17:21758257-21758121 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 386-517 |
| Cow position: | chr17:1040635-1040769 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 394-520 |
| Cow position: | chr17:32009540-32009418 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 112, 14 |
Show alignments to all cow chromosomes.