Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 242-492 |
| Cow position: | chr18:44802206-44801967 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 82, 16 |
| Conread position: | 242-502 |
| Cow position: | chr18:9365589-9365849 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 18 |
| Conread position: | 242-511 |
| Cow position: | chr18:4540195-4539936 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 206, 18 |
| Conread position: | 242-512 |
| Cow position: | chr18:5486928-5487191 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 242-522 |
| Cow position: | chr18:45104769-45104491 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 114, 16 |
| Conread position: | 251-517 |
| Cow position: | chr18:19850062-19849807 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 49 |
| Conread position: | 252-523 |
| Cow position: | chr18:52382387-52382655 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 199, 7 |
| Conread position: | 253-523 |
| Cow position: | chr18:45570708-45570965 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 254-479 |
| Cow position: | chr18:15881169-15880948 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 124 |
| Conread position: | 254-501 |
| Cow position: | chr18:33272633-33272865 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 172, 122 |
| Conread position: | 254-510 |
| Cow position: | chr18:20174445-20174188 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 15, 127 |
| Conread position: | 254-511 |
| Cow position: | chr18:13508041-13507797 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 195, 44 |
| Conread position: | 254-511 |
| Cow position: | chr18:26938670-26938920 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 254-512 |
| Cow position: | chr18:29058807-29058551 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 51 |
| Conread position: | 254-513 |
| Cow position: | chr18:44549219-44548969 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 194, 114 |
| Conread position: | 254-518 |
| Cow position: | chr18:10954164-10954424 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 198, 13 |
| Conread position: | 254-520 |
| Cow position: | chr18:10575797-10576053 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-523 |
| Cow position: | chr18:44262313-44262582 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 21 |
| Conread position: | 255-502 |
| Cow position: | chr18:28101312-28101564 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 255-513 |
| Cow position: | chr18:4666522-4666267 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 196, 44 |
| Conread position: | 256-521 |
| Cow position: | chr18:33299589-33299854 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 114, 8 |
| Conread position: | 258-518 |
| Cow position: | chr18:38686784-38687040 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 10, 59 |
| Conread position: | 260-456 |
| Cow position: | chr18:34615796-34615599 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 260-518 |
| Cow position: | chr18:19619638-19619898 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 201 |
| Conread position: | 265-512 |
| Cow position: | chr18:12113668-12113433 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 184, 71 |
| Conread position: | 265-512 |
| Cow position: | chr18:22065662-22065408 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 153, 12 |
| Conread position: | 267-502 |
| Cow position: | chr18:36477899-36478132 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 183, 41 |
| Conread position: | 267-505 |
| Cow position: | chr18:51211883-51212117 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 32 |
| Conread position: | 267-520 |
| Cow position: | chr18:25647548-25647300 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 37 |
| Conread position: | 268-511 |
| Cow position: | chr18:11183644-11183886 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 31 |
| Conread position: | 269-501 |
| Cow position: | chr18:13359765-13359996 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 158, 63 |
| Conread position: | 269-509 |
| Cow position: | chr18:23808170-23807933 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 158, 107 |
| Conread position: | 269-511 |
| Cow position: | chr18:28658211-28657967 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 270-511 |
| Cow position: | chr18:55505105-55505351 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 73, 29 |
| Conread position: | 270-523 |
| Cow position: | chr18:11684694-11684933 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 271-510 |
| Cow position: | chr18:6610153-6609917 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 29, 89 |
| Conread position: | 273-523 |
| Cow position: | chr18:36231004-36230771 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 276-512 |
| Cow position: | chr18:50381967-50382199 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 67, 103 |
| Conread position: | 276-522 |
| Cow position: | chr18:38985397-38985648 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 240 |
| Conread position: | 276-523 |
| Cow position: | chr18:42479870-42479635 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 177, 20 |
| Conread position: | 277-518 |
| Cow position: | chr18:33407322-33407563 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 27 |
| Conread position: | 279-490 |
| Cow position: | chr18:35537516-35537313 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 143, 60 |
| Conread position: | 279-518 |
| Cow position: | chr18:20641772-20641540 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 169, 109 |
| Conread position: | 280-511 |
| Cow position: | chr18:5578018-5578248 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 18 |
| Conread position: | 285-523 |
| Cow position: | chr18:11691691-11691457 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 14 |
| Conread position: | 303-521 |
| Cow position: | chr18:48713287-48713501 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 74 |
| Conread position: | 304-490 |
| Cow position: | chr18:35582364-35582180 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 145, 89 |
| Conread position: | 309-520 |
| Cow position: | chr18:8164297-8164085 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 140, 106 |
| Conread position: | 325-518 |
| Cow position: | chr18:17391215-17391037 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 325-520 |
| Cow position: | chr18:33007815-33008011 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 124, 192 |
| Conread position: | 327-510 |
| Cow position: | chr18:18592233-18592417 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 121, 99 |
| Conread position: | 329-507 |
| Cow position: | chr18:33896661-33896492 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 5, 50 |
| Conread position: | 343-491 |
| Cow position: | chr18:14085238-14085380 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 84, 23 |
| Conread position: | 352-501 |
| Cow position: | chr18:54056344-54056491 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 360-505 |
| Cow position: | chr18:1399562-1399416 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 365-511 |
| Cow position: | chr18:48451847-48452001 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 370-509 |
| Cow position: | chr18:4602211-4602072 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 370-523 |
| Cow position: | chr18:18369563-18369408 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 371-502 |
| Cow position: | chr18:35419611-35419743 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 383-520 |
| Cow position: | chr18:16686524-16686387 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 133 |
Show alignments to all cow chromosomes.