Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 229-501 |
| Cow position: | chr19:48409203-48409464 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 231-519 |
| Cow position: | chr19:4252290-4252001 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 128 |
| Conread position: | 238-514 |
| Cow position: | chr19:35539995-35540264 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 242-506 |
| Cow position: | chr19:5656412-5656157 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 149, 16 |
| Conread position: | 242-512 |
| Cow position: | chr19:8375603-8375338 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 202, 16 |
| Conread position: | 242-512 |
| Cow position: | chr19:15068295-15068040 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 209, 17 |
| Conread position: | 242-513 |
| Cow position: | chr19:23785886-23786158 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 242-520 |
| Cow position: | chr19:21198825-21199109 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 16 |
| Conread position: | 242-520 |
| Cow position: | chr19:39576871-39576598 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 17 |
| Conread position: | 244-507 |
| Cow position: | chr19:20693195-20693455 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 251-491 |
| Cow position: | chr19:21065484-21065709 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 251-506 |
| Cow position: | chr19:18786618-18786365 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 7 |
| Conread position: | 251-506 |
| Cow position: | chr19:35018538-35018287 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 251-511 |
| Cow position: | chr19:25086251-25086489 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 251-519 |
| Cow position: | chr19:33912930-33912655 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 253-523 |
| Cow position: | chr19:13129599-13129849 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 195, 37 |
| Conread position: | 254-498 |
| Cow position: | chr19:23005659-23005410 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 134 |
| Conread position: | 254-501 |
| Cow position: | chr19:30533648-30533888 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-502 |
| Cow position: | chr19:39751191-39751433 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 254-509 |
| Cow position: | chr19:38340265-38340019 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 45 |
| Conread position: | 254-511 |
| Cow position: | chr19:5185547-5185281 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 14, 257 |
| Conread position: | 254-511 |
| Cow position: | chr19:43702996-43702748 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 11, 80 |
| Conread position: | 254-512 |
| Cow position: | chr19:2138399-2138140 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 15, 125 |
| Conread position: | 254-513 |
| Cow position: | chr19:7978852-7978592 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 254-520 |
| Cow position: | chr19:35741863-35742132 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 170 |
| Conread position: | 254-521 |
| Cow position: | chr19:16566865-16567126 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 254-522 |
| Cow position: | chr19:46918547-46918822 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 264 |
| Conread position: | 254-523 |
| Cow position: | chr19:27180550-27180288 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 166, 119 |
| Conread position: | 254-524 |
| Cow position: | chr19:16694339-16694062 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 258-456 |
| Cow position: | chr19:34654865-34654665 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 258-494 |
| Cow position: | chr19:53037440-53037206 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 160, 46 |
| Conread position: | 258-520 |
| Cow position: | chr19:8033452-8033718 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 132 |
| Conread position: | 258-523 |
| Cow position: | chr19:6515974-6516244 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 167, 46 |
| Conread position: | 263-501 |
| Cow position: | chr19:8839321-8839556 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 185, 113 |
| Conread position: | 263-517 |
| Cow position: | chr19:36379966-36380213 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 265-512 |
| Cow position: | chr19:55952423-55952191 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 188, 34 |
| Conread position: | 266-523 |
| Cow position: | chr19:31825294-31825037 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 104, 122 |
| Conread position: | 267-516 |
| Cow position: | chr19:46454573-46454819 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 109, 54 |
| Conread position: | 269-519 |
| Cow position: | chr19:2771283-2771041 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 176, 36 |
| Conread position: | 269-523 |
| Cow position: | chr19:37647115-37646861 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 31 |
| Conread position: | 276-512 |
| Cow position: | chr19:10545977-10545740 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 173, 57 |
| Conread position: | 276-516 |
| Cow position: | chr19:41584705-41584940 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 276-517 |
| Cow position: | chr19:56382878-56383110 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 231, 104 |
| Conread position: | 276-521 |
| Cow position: | chr19:33033715-33033466 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 242 |
| Conread position: | 278-450 |
| Cow position: | chr19:35076754-35076595 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 82 |
| Conread position: | 278-511 |
| Cow position: | chr19:1968571-1968344 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 98 |
| Conread position: | 278-518 |
| Cow position: | chr19:10186233-10186474 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 92, 79 |
| Conread position: | 280-523 |
| Cow position: | chr19:17795631-17795873 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 43 |
| Conread position: | 281-516 |
| Cow position: | chr19:41945926-41946154 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 167, 18 |
| Conread position: | 285-522 |
| Cow position: | chr19:3621168-3621402 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 18, 85 |
| Conread position: | 286-518 |
| Cow position: | chr19:6881137-6880903 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 291-502 |
| Cow position: | chr19:9209248-9209468 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 106, 165 |
| Conread position: | 298-518 |
| Cow position: | chr19:32754267-32754495 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 53, 85 |
| Conread position: | 305-499 |
| Cow position: | chr19:51231061-51230873 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 55 |
| Conread position: | 314-502 |
| Cow position: | chr19:23244751-23244566 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 135, 62 |
| Conread position: | 316-511 |
| Cow position: | chr19:11565380-11565189 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 133, 97 |
| Conread position: | 324-502 |
| Cow position: | chr19:24137037-24137216 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 340-523 |
| Cow position: | chr19:22043549-22043379 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 108, 27 |
| Conread position: | 342-492 |
| Cow position: | chr19:48960187-48960340 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 347-512 |
| Cow position: | chr19:50298167-50298335 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 351-523 |
| Cow position: | chr19:24760078-24759909 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 98, 8 |
| Conread position: | 362-518 |
| Cow position: | chr19:35457481-35457634 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 87, 16 |
| Conread position: | 374-522 |
| Cow position: | chr19:25807478-25807328 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 379-519 |
| Cow position: | chr19:15719787-15719648 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 383-502 |
| Cow position: | chr19:56140832-56140952 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 400-507 |
| Cow position: | chr19:52158386-52158495 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.