Cow genome map

Conread name: rpigcf0_003920.y1

Conread position: 227-523
Cow position: chr2:18621098-18621395 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 18, 52

Conread position: 229-522
Cow position: chr2:42599624-42599918 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 25, 76

Conread position: 237-512
Cow position: chr2:27613321-27613044 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 112, 21

Conread position: 238-517
Cow position: chr2:42927747-42927461 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 242-507
Cow position: chr2:24709633-24709370 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 190
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 189, 15

Conread position: 242-509
Cow position: chr2:42226560-42226297 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 69

Conread position: 242-510
Cow position: chr2:17341284-17341551 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 187
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 16

Conread position: 242-510
Cow position: chr2:24270934-24271207 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 18, 33

Conread position: 242-512
Cow position: chr2:28480405-28480139 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 16

Conread position: 242-518
Cow position: chr2:18997448-18997710 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 212
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 207, 16

Conread position: 242-523
Cow position: chr2:23493244-23493522 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 16

Conread position: 242-523
Cow position: chr2:45912928-45912647 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 106, 16

Conread position: 242-523
Cow position: chr2:48232722-48232445 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 185
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 180, 17

Conread position: 246-519
Cow position: chr2:80247-79977 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 76

Conread position: 249-513
Cow position: chr2:77377954-77378226 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 11

Conread position: 251-489
Cow position: chr2:21416033-21416258 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 179
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 197, 7

Conread position: 251-501
Cow position: chr2:46184559-46184302 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 251-502
Cow position: chr2:16422271-16422519 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 49

Conread position: 251-505
Cow position: chr2:39941204-39941461 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 36

Conread position: 251-506
Cow position: chr2:46033057-46033302 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 199, 9

Conread position: 251-512
Cow position: chr2:42255146-42255415 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 162

Conread position: 251-518
Cow position: chr2:2673244-2673507 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 8

Conread position: 251-520
Cow position: chr2:41248285-41248553 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 80

Conread position: 251-523
Cow position: chr2:39589974-39590239 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 197
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 202, 7

Conread position: 251-523
Cow position: chr2:39597017-39597282 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 197
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 202, 7

Conread position: 251-523
Cow position: chr2:77157635-77157360 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 7

Conread position: 252-511
Cow position: chr2:21002906-21003146 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 182
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 19

Conread position: 253-512
Cow position: chr2:48069682-48069418 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 64

Conread position: 253-520
Cow position: chr2:37921061-37920797 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 58

Conread position: 254-487
Cow position: chr2:7193923-7194153 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 178, 121

Conread position: 254-501
Cow position: chr2:32114783-32115042 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 254-501
Cow position: chr2:47116192-47115954 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 0

Conread position: 254-511
Cow position: chr2:70703972-70704231 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 64

Conread position: 254-512
Cow position: chr2:11806037-11806299 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 61

Conread position: 254-512
Cow position: chr2:13001532-13001779 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 60

Conread position: 254-512
Cow position: chr2:30112733-30112992 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 169, 161

Conread position: 254-518
Cow position: chr2:43994652-43994915 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 201

Conread position: 254-519
Cow position: chr2:55877121-55877370 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 45, 0

Conread position: 254-522
Cow position: chr2:69747906-69747632 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 138

Conread position: 254-523
Cow position: chr2:70895747-70896019 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 197
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 16, 128

Conread position: 255-513
Cow position: chr2:61974518-61974781 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 12

Conread position: 255-516
Cow position: chr2:9173540-9173292 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 184
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 12, 115

Conread position: 256-502
Cow position: chr2:38628630-38628873 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 44

Conread position: 258-502
Cow position: chr2:21644728-21644484 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 189

Conread position: 258-511
Cow position: chr2:42800772-42801021 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 41

Conread position: 258-512
Cow position: chr2:45623750-45623994 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 167, 67

Conread position: 258-517
Cow position: chr2:21284661-21284917 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 14, 106

Conread position: 258-518
Cow position: chr2:45575271-45575013 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 124

Conread position: 258-520
Cow position: chr2:82581206-82580946 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 110

Conread position: 262-517
Cow position: chr2:39855518-39855770 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 177
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 98, 55

Conread position: 264-482
Cow position: chr2:54253090-54253297 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 11, 0

Conread position: 265-489
Cow position: chr2:50277754-50277978 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 161, 40

Conread position: 265-490
Cow position: chr2:48617710-48617936 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 166
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 183, 0

Conread position: 265-501
Cow position: chr2:54700181-54700417 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 180
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 99, 40

Conread position: 265-513
Cow position: chr2:74260191-74260435 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 34

Conread position: 265-518
Cow position: chr2:46294303-46294056 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 25

Conread position: 265-522
Cow position: chr2:39815554-39815300 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 34

Conread position: 265-522
Cow position: chr2:45499465-45499218 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 184, 98

Conread position: 265-523
Cow position: chr2:26438994-26438739 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 69

Conread position: 266-490
Cow position: chr2:30639924-30640142 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 33, 0

Conread position: 266-498
Cow position: chr2:64830588-64830811 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 160, 103

Conread position: 266-501
Cow position: chr2:73095051-73094825 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 181
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 100, 0

Conread position: 266-511
Cow position: chr2:41451963-41452208 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 47

Conread position: 266-519
Cow position: chr2:18858401-18858163 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 182, 94

Conread position: 267-511
Cow position: chr2:6738537-6738294 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 38, 121

Conread position: 267-520
Cow position: chr2:46189356-46189114 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 182, 38

Conread position: 271-523
Cow position: chr2:19493951-19494199 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 191
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 131, 97

Conread position: 273-506
Cow position: chr2:1658239-1658464 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 86

Conread position: 276-490
Cow position: chr2:43835820-43835607 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 172, 23

Conread position: 276-518
Cow position: chr2:13684449-13684678 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 277-498
Cow position: chr2:16594351-16594574 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 149, 136

Conread position: 278-511
Cow position: chr2:75600457-75600701 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 91, 21

Conread position: 279-517
Cow position: chr2:45665779-45666013 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 169, 20

Conread position: 281-520
Cow position: chr2:43578049-43577815 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 170, 95

Conread position: 282-523
Cow position: chr2:73353537-73353779 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 23, 113

Conread position: 285-512
Cow position: chr2:25964733-25964510 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 163, 91

Conread position: 287-523
Cow position: chr2:46194549-46194780 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 144, 89

Conread position: 290-523
Cow position: chr2:46330813-46331048 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 159, 0

Conread position: 297-522
Cow position: chr2:72183726-72183508 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 206, 62

Conread position: 298-492
Cow position: chr2:45535235-45535420 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 152, 14

Conread position: 299-508
Cow position: chr2:15329168-15329362 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 162
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 149, 69

Conread position: 299-516
Cow position: chr2:13604231-13604448 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 149, 92

Conread position: 301-523
Cow position: chr2:68716901-68716683 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 20

Conread position: 311-523
Cow position: chr2:38362594-38362380 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 138, 207

Conread position: 313-519
Cow position: chr2:41145090-41145295 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 162
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 136, 115

Conread position: 325-520
Cow position: chr2:44051095-44051293 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 157
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 80, 183

Conread position: 329-523
Cow position: chr2:46120841-46120655 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 37, 109

Conread position: 333-523
Cow position: chr2:71622252-71622062 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 116, 74

Conread position: 338-520
Cow position: chr2:827806-827629 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 110, 46

Conread position: 343-511
Cow position: chr2:70495081-70495249 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 106, 50

Conread position: 351-501
Cow position: chr2:46343325-46343177 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 19, 104

Conread position: 352-501
Cow position: chr2:19328365-19328510 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 97, 31

Conread position: 361-523
Cow position: chr2:21078403-21078567 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 87, 0

Conread position: 385-510
Cow position: chr2:45542547-45542420 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 386-510
Cow position: chr2:68239083-68239208 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 396-522
Cow position: chr2:17805904-17805778 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 107, 56

Show alignments to all cow chromosomes.