Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 236-516 |
| Cow position: | chr20:20202962-20203239 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 22 |
| Conread position: | 242-509 |
| Cow position: | chr20:38123637-38123906 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 242-517 |
| Cow position: | chr20:6571084-6571351 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 209, 16 |
| Conread position: | 247-492 |
| Cow position: | chr20:5826694-5826939 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 16 |
| Conread position: | 249-518 |
| Cow position: | chr20:8703148-8702893 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 251-523 |
| Cow position: | chr20:13967498-13967229 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 127 |
| Conread position: | 253-512 |
| Cow position: | chr20:13821823-13821562 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 253-520 |
| Cow position: | chr20:18321035-18320765 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 253-523 |
| Cow position: | chr20:27339829-27340090 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 254-512 |
| Cow position: | chr20:31740452-31740203 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 196, 64 |
| Conread position: | 254-516 |
| Cow position: | chr20:7426430-7426172 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 138 |
| Conread position: | 254-518 |
| Cow position: | chr20:8578006-8578271 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 254-522 |
| Cow position: | chr20:12582187-12581928 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 14, 108 |
| Conread position: | 254-523 |
| Cow position: | chr20:17251471-17251745 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 255-512 |
| Cow position: | chr20:40511996-40511741 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 258-509 |
| Cow position: | chr20:22920393-22920153 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 258-510 |
| Cow position: | chr20:40177016-40177262 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 260-516 |
| Cow position: | chr20:38817779-38818028 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 263-516 |
| Cow position: | chr20:22445860-22445616 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 12 |
| Conread position: | 264-492 |
| Cow position: | chr20:15549124-15548902 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 265-501 |
| Cow position: | chr20:13876934-13876697 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 160, 145 |
| Conread position: | 265-520 |
| Cow position: | chr20:28982472-28982726 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 183, 34 |
| Conread position: | 265-523 |
| Cow position: | chr20:9473840-9473585 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 158, 111 |
| Conread position: | 265-523 |
| Cow position: | chr20:24391761-24392006 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 183, 41 |
| Conread position: | 266-523 |
| Cow position: | chr20:14806659-14806914 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 119 |
| Conread position: | 267-492 |
| Cow position: | chr20:12420845-12420621 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 119 |
| Conread position: | 267-501 |
| Cow position: | chr20:18618415-18618641 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 267-507 |
| Cow position: | chr20:14735453-14735690 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 32 |
| Conread position: | 268-512 |
| Cow position: | chr20:26996311-26996553 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 40 |
| Conread position: | 271-523 |
| Cow position: | chr20:24135485-24135244 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 181, 112 |
| Conread position: | 276-518 |
| Cow position: | chr20:39398274-39398513 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 173, 28 |
| Conread position: | 276-520 |
| Cow position: | chr20:38768668-38768431 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 104 |
| Conread position: | 277-514 |
| Cow position: | chr20:9379195-9379429 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 150, 99 |
| Conread position: | 278-523 |
| Cow position: | chr20:34776973-34777207 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 143, 98 |
| Conread position: | 280-513 |
| Cow position: | chr20:23505618-23505848 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 19 |
| Conread position: | 281-506 |
| Cow position: | chr20:20983797-20984008 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 167, 74 |
| Conread position: | 287-502 |
| Cow position: | chr20:38486752-38486539 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 134, 117 |
| Conread position: | 287-519 |
| Cow position: | chr20:39325181-39325414 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 138, 155 |
| Conread position: | 290-508 |
| Cow position: | chr20:15566032-15565812 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 143, 216 |
| Conread position: | 295-472 |
| Cow position: | chr20:8607116-8606939 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 84, 90 |
| Conread position: | 296-519 |
| Cow position: | chr20:27408071-27407851 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 17 |
| Conread position: | 296-523 |
| Cow position: | chr20:23846867-23846638 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 153, 102 |
| Conread position: | 299-520 |
| Cow position: | chr20:11542475-11542256 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 100 |
| Conread position: | 303-499 |
| Cow position: | chr20:36207614-36207810 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 121 |
| Conread position: | 313-501 |
| Cow position: | chr20:37272538-37272721 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 28 |
| Conread position: | 319-524 |
| Cow position: | chr20:3321310-3321108 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 129, 57 |
| Conread position: | 325-516 |
| Cow position: | chr20:7210869-7211062 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 326-522 |
| Cow position: | chr20:7439014-7438825 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 126, 22 |
| Conread position: | 334-501 |
| Cow position: | chr20:15312502-15312671 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 341-499 |
| Cow position: | chr20:5636330-5636489 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 342-509 |
| Cow position: | chr20:28441177-28441344 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 374-518 |
| Cow position: | chr20:8546945-8547090 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 383-520 |
| Cow position: | chr20:39267071-39266932 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 395-520 |
| Cow position: | chr20:18379282-18379403 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 111, 57 |
| Conread position: | 398-523 |
| Cow position: | chr20:23103123-23103249 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 399-513 |
| Cow position: | chr20:22265341-22265223 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.