Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 231-520 |
| Cow position: | chr21:29484744-29485027 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 242-492 |
| Cow position: | chr21:30250435-30250177 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 141, 16 |
| Conread position: | 242-506 |
| Cow position: | chr21:21216368-21216111 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 16 |
| Conread position: | 242-506 |
| Cow position: | chr21:42348905-42348639 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 16 |
| Conread position: | 242-509 |
| Cow position: | chr21:81843-82116 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 16 |
| Conread position: | 242-511 |
| Cow position: | chr21:41974606-41974337 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 242-516 |
| Cow position: | chr21:20262561-20262291 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 244-518 |
| Cow position: | chr21:641359-641630 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 14 |
| Conread position: | 251-505 |
| Cow position: | chr21:25764413-25764665 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 251-507 |
| Cow position: | chr21:13035267-13035010 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 253-505 |
| Cow position: | chr21:10866655-10866911 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 253-511 |
| Cow position: | chr21:7672913-7673158 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 253-513 |
| Cow position: | chr21:16612412-16612669 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 115 |
| Conread position: | 253-516 |
| Cow position: | chr21:393801-394062 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 202 |
| Conread position: | 253-519 |
| Cow position: | chr21:22856002-22856265 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 168, 28 |
| Conread position: | 254-479 |
| Cow position: | chr21:363436-363656 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 14, 84 |
| Conread position: | 254-502 |
| Cow position: | chr21:725109-724857 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 254-516 |
| Cow position: | chr21:31691262-31691527 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 16 |
| Conread position: | 254-518 |
| Cow position: | chr21:15976430-15976679 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 167, 37 |
| Conread position: | 254-519 |
| Cow position: | chr21:40899117-40899383 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 232 |
| Conread position: | 254-520 |
| Cow position: | chr21:29069547-29069282 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 124 |
| Conread position: | 254-521 |
| Cow position: | chr21:41957393-41957128 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 12, 108 |
| Conread position: | 254-523 |
| Cow position: | chr21:27230011-27229742 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 122 |
| Conread position: | 254-523 |
| Cow position: | chr21:28734131-28733864 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 254-524 |
| Cow position: | chr21:36163182-36162910 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 255-520 |
| Cow position: | chr21:12616924-12617184 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 123 |
| Conread position: | 258-419 |
| Cow position: | chr21:28919838-28919677 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 41, 75 |
| Conread position: | 258-490 |
| Cow position: | chr21:23478932-23478700 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 258-511 |
| Cow position: | chr21:46849335-46849089 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 169, 120 |
| Conread position: | 258-516 |
| Cow position: | chr21:46263964-46264214 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 194, 69 |
| Conread position: | 258-523 |
| Cow position: | chr21:13897980-13898236 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 162, 9 |
| Conread position: | 258-523 |
| Cow position: | chr21:28626029-28626290 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 67 |
| Conread position: | 258-523 |
| Cow position: | chr21:48251242-48250977 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 191, 166 |
| Conread position: | 263-490 |
| Cow position: | chr21:33514-33738 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 168, 113 |
| Conread position: | 263-506 |
| Cow position: | chr21:23785825-23786063 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 186, 23 |
| Conread position: | 263-512 |
| Cow position: | chr21:5455189-5454948 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 98, 36 |
| Conread position: | 265-498 |
| Cow position: | chr21:4080149-4080384 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 48 |
| Conread position: | 265-515 |
| Cow position: | chr21:8888661-8888903 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 186, 128 |
| Conread position: | 265-516 |
| Cow position: | chr21:40786465-40786721 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 265-517 |
| Cow position: | chr21:912173-911923 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 10, 112 |
| Conread position: | 265-517 |
| Cow position: | chr21:23192723-23192471 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 240 |
| Conread position: | 266-522 |
| Cow position: | chr21:22860798-22861049 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 183, 33 |
| Conread position: | 266-523 |
| Cow position: | chr21:27743538-27743797 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 155, 73 |
| Conread position: | 267-519 |
| Cow position: | chr21:45866733-45866978 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 158, 64 |
| Conread position: | 267-523 |
| Cow position: | chr21:12801947-12801701 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 237, 32 |
| Conread position: | 276-505 |
| Cow position: | chr21:11645163-11644938 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 122 |
| Conread position: | 276-509 |
| Cow position: | chr21:35569578-35569346 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 276-522 |
| Cow position: | chr21:42135818-42135572 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 238 |
| Conread position: | 276-523 |
| Cow position: | chr21:42841785-42841549 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 147, 23 |
| Conread position: | 277-523 |
| Cow position: | chr21:38449645-38449397 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 138, 119 |
| Conread position: | 278-508 |
| Cow position: | chr21:45850902-45850677 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 171, 21 |
| Conread position: | 279-520 |
| Cow position: | chr21:32559545-32559314 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 280-510 |
| Cow position: | chr21:18494776-18495008 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 19 |
| Conread position: | 282-514 |
| Cow position: | chr21:6102457-6102216 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 130 |
| Conread position: | 293-511 |
| Cow position: | chr21:19363641-19363423 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 100 |
| Conread position: | 295-501 |
| Cow position: | chr21:32339912-32339709 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 136, 68 |
| Conread position: | 302-518 |
| Cow position: | chr21:46860270-46860065 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 199, 50 |
| Conread position: | 305-499 |
| Cow position: | chr21:27624547-27624735 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 156 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 305-502 |
| Cow position: | chr21:28617425-28617618 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 324-523 |
| Cow position: | chr21:957520-957721 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 6, 194 |
| Conread position: | 325-507 |
| Cow position: | chr21:14515699-14515884 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 8, 181 |
| Conread position: | 325-512 |
| Cow position: | chr21:18041988-18041804 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 124, 34 |
| Conread position: | 326-497 |
| Cow position: | chr21:7825320-7825153 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 126, 62 |
| Conread position: | 327-490 |
| Cow position: | chr21:29978907-29978743 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 121 |
| Conread position: | 335-519 |
| Cow position: | chr21:20260456-20260275 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 114, 33 |
| Conread position: | 342-510 |
| Cow position: | chr21:41209477-41209306 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 342-512 |
| Cow position: | chr21:20192774-20192936 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 106, 26 |
| Conread position: | 343-523 |
| Cow position: | chr21:20152820-20153004 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 35 |
| Conread position: | 347-520 |
| Cow position: | chr21:30222218-30222390 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 102, 47 |
| Conread position: | 353-523 |
| Cow position: | chr21:20418806-20418634 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.