Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 220-518 |
| Cow position: | chr22:27431999-27431716 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 237-516 |
| Cow position: | chr22:26151418-26151133 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 238-508 |
| Cow position: | chr22:44717418-44717680 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 29 |
| Conread position: | 238-513 |
| Cow position: | chr22:40048267-40048526 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 187, 25 |
| Conread position: | 239-512 |
| Cow position: | chr22:46568186-46567915 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 147, 19 |
| Conread position: | 241-519 |
| Cow position: | chr22:19848690-19848413 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 22 |
| Conread position: | 242-502 |
| Cow position: | chr22:43397725-43397975 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 18 |
| Conread position: | 242-520 |
| Cow position: | chr22:13011571-13011291 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 17 |
| Conread position: | 242-520 |
| Cow position: | chr22:22160427-22160704 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 16 |
| Conread position: | 242-524 |
| Cow position: | chr22:44740812-44741076 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 263, 16 |
| Conread position: | 244-492 |
| Cow position: | chr22:28071262-28071509 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 205, 14 |
| Conread position: | 250-492 |
| Cow position: | chr22:33949288-33949047 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 251-506 |
| Cow position: | chr22:13017066-13016827 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 119, 7 |
| Conread position: | 251-511 |
| Cow position: | chr22:9251302-9251043 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 38, 7 |
| Conread position: | 251-523 |
| Cow position: | chr22:9127121-9127390 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 12 |
| Conread position: | 254-490 |
| Cow position: | chr22:16620893-16621126 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 162, 15 |
| Conread position: | 254-490 |
| Cow position: | chr22:18926068-18926303 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 194, 185 |
| Conread position: | 254-492 |
| Cow position: | chr22:8481362-8481595 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 254-500 |
| Cow position: | chr22:2623796-2623559 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 195, 10 |
| Conread position: | 254-506 |
| Cow position: | chr22:28370660-28370910 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 148 |
| Conread position: | 254-506 |
| Cow position: | chr22:34726388-34726642 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-512 |
| Cow position: | chr22:1068201-1067937 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-512 |
| Cow position: | chr22:11613142-11613401 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-515 |
| Cow position: | chr22:8446646-8446917 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-519 |
| Cow position: | chr22:22155315-22155582 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-521 |
| Cow position: | chr22:18021304-18021048 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 51, 74 |
| Conread position: | 254-522 |
| Cow position: | chr22:9734573-9734833 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 30 |
| Conread position: | 254-522 |
| Cow position: | chr22:21296009-21295744 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 254-523 |
| Cow position: | chr22:13840856-13841121 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 254-523 |
| Cow position: | chr22:13861303-13861569 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 81 |
| Conread position: | 254-523 |
| Cow position: | chr22:16044715-16044435 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 68 |
| Conread position: | 255-504 |
| Cow position: | chr22:33485888-33485637 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 258-510 |
| Cow position: | chr22:3993331-3993581 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 113 |
| Conread position: | 258-510 |
| Cow position: | chr22:4017196-4017448 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 41 |
| Conread position: | 258-518 |
| Cow position: | chr22:27171537-27171280 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 258-522 |
| Cow position: | chr22:30698902-30699161 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 26 |
| Conread position: | 265-490 |
| Cow position: | chr22:40071697-40071925 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 79, 195 |
| Conread position: | 265-506 |
| Cow position: | chr22:5337870-5337634 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 266-520 |
| Cow position: | chr22:15090467-15090720 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 267-499 |
| Cow position: | chr22:6710045-6709821 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 181, 49 |
| Conread position: | 267-509 |
| Cow position: | chr22:26097883-26097651 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 181, 32 |
| Conread position: | 267-512 |
| Cow position: | chr22:41271260-41271025 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 267-517 |
| Cow position: | chr22:845633-845878 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 269-492 |
| Cow position: | chr22:1590753-1590975 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 8 |
| Conread position: | 270-492 |
| Cow position: | chr22:28640419-28640198 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 180, 34 |
| Conread position: | 270-502 |
| Cow position: | chr22:7884724-7884951 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 178, 104 |
| Conread position: | 270-521 |
| Cow position: | chr22:26141007-26141258 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 17 |
| Conread position: | 270-523 |
| Cow position: | chr22:6215821-6215575 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 179, 80 |
| Conread position: | 274-508 |
| Cow position: | chr22:28665005-28665255 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 276-490 |
| Cow position: | chr22:44386659-44386456 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 172, 45 |
| Conread position: | 276-502 |
| Cow position: | chr22:35902955-35902738 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 276-513 |
| Cow position: | chr22:24066496-24066264 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 48, 28 |
| Conread position: | 278-492 |
| Cow position: | chr22:7967439-7967654 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 281-521 |
| Cow position: | chr22:26786097-26786334 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 282-509 |
| Cow position: | chr22:10294795-10295007 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 222, 96 |
| Conread position: | 291-520 |
| Cow position: | chr22:7882303-7882533 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 294-493 |
| Cow position: | chr22:28356792-28356991 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 190 |
| Conread position: | 296-474 |
| Cow position: | chr22:40349109-40349283 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 296-522 |
| Cow position: | chr22:23403882-23403666 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 131, 74 |
| Conread position: | 298-520 |
| Cow position: | chr22:10314838-10315053 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 152, 80 |
| Conread position: | 300-524 |
| Cow position: | chr22:27512401-27512177 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 302-517 |
| Cow position: | chr22:14118739-14118956 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 309-518 |
| Cow position: | chr22:12974621-12974411 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 313-518 |
| Cow position: | chr22:5616075-5616288 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 315-522 |
| Cow position: | chr22:33918121-33917914 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 121, 61 |
| Conread position: | 334-511 |
| Cow position: | chr22:3269682-3269505 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 114, 81 |
| Conread position: | 338-513 |
| Cow position: | chr22:7252847-7252668 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 147 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 344-520 |
| Cow position: | chr22:12803578-12803407 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 107, 24 |
| Conread position: | 396-520 |
| Cow position: | chr22:17224809-17224691 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 398-520 |
| Cow position: | chr22:27267397-27267519 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 118 |
Show alignments to all cow chromosomes.