Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 237-507 |
| Cow position: | chr24:7001389-7001118 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 242-511 |
| Cow position: | chr24:2402692-2402419 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 242-515 |
| Cow position: | chr24:42007427-42007694 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 242-523 |
| Cow position: | chr24:17311524-17311257 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 242-523 |
| Cow position: | chr24:33985330-33985053 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 180, 16 |
| Conread position: | 248-511 |
| Cow position: | chr24:28029014-28028757 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 253-490 |
| Cow position: | chr24:44041318-44041082 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 125 |
| Conread position: | 253-503 |
| Cow position: | chr24:39842154-39841905 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 254-490 |
| Cow position: | chr24:40129820-40130056 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 8, 46 |
| Conread position: | 254-502 |
| Cow position: | chr24:25320685-25320937 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 254-510 |
| Cow position: | chr24:6161152-6160901 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 16, 123 |
| Conread position: | 254-510 |
| Cow position: | chr24:40908709-40908971 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 14, 100 |
| Conread position: | 254-511 |
| Cow position: | chr24:31811880-31812138 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 46 |
| Conread position: | 254-514 |
| Cow position: | chr24:11839873-11840143 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 254-521 |
| Cow position: | chr24:211674-211946 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 255-521 |
| Cow position: | chr24:16556935-16556678 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 257-518 |
| Cow position: | chr24:28496889-28496627 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 47 |
| Conread position: | 258-516 |
| Cow position: | chr24:3165521-3165772 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 234, 118 |
| Conread position: | 258-516 |
| Cow position: | chr24:29063946-29063699 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 88, 81 |
| Conread position: | 258-520 |
| Cow position: | chr24:32693402-32693663 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 168, 189 |
| Conread position: | 258-523 |
| Cow position: | chr24:32205096-32204834 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 263-518 |
| Cow position: | chr24:27633118-27633365 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 248, 115 |
| Conread position: | 263-523 |
| Cow position: | chr24:36404443-36404182 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 7, 51 |
| Conread position: | 264-501 |
| Cow position: | chr24:29388956-29389181 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 184, 26 |
| Conread position: | 264-509 |
| Cow position: | chr24:35568897-35569132 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 194, 11 |
| Conread position: | 264-512 |
| Cow position: | chr24:25677740-25677989 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 185, 90 |
| Conread position: | 265-502 |
| Cow position: | chr24:11876590-11876826 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 117 |
| Conread position: | 265-510 |
| Cow position: | chr24:27809886-27810136 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 265-510 |
| Cow position: | chr24:28699302-28699532 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 157, 26 |
| Conread position: | 265-522 |
| Cow position: | chr24:17104860-17104611 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 266-493 |
| Cow position: | chr24:11006924-11007152 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 155, 14 |
| Conread position: | 266-501 |
| Cow position: | chr24:28553836-28553612 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 267-501 |
| Cow position: | chr24:17860542-17860321 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 269-502 |
| Cow position: | chr24:29170676-29170910 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 152, 108 |
| Conread position: | 269-521 |
| Cow position: | chr24:5141652-5141902 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 46 |
| Conread position: | 272-516 |
| Cow position: | chr24:35073806-35074048 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 152, 104 |
| Conread position: | 273-500 |
| Cow position: | chr24:27941293-27941070 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 64 |
| Conread position: | 276-490 |
| Cow position: | chr24:43200556-43200350 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 61, 101 |
| Conread position: | 281-518 |
| Cow position: | chr24:27967803-27968035 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 205, 99 |
| Conread position: | 281-523 |
| Cow position: | chr24:30314313-30314066 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 291-520 |
| Cow position: | chr24:11734455-11734680 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 219, 160 |
| Conread position: | 299-518 |
| Cow position: | chr24:33724110-33723888 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 128 |
| Conread position: | 308-482 |
| Cow position: | chr24:18474998-18474824 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 309-520 |
| Cow position: | chr24:6487671-6487876 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 310-506 |
| Cow position: | chr24:27054152-27054353 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 312-523 |
| Cow position: | chr24:31324034-31324245 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 137, 23 |
| Conread position: | 338-507 |
| Cow position: | chr24:29540131-29539962 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 111, 166 |
| Conread position: | 338-518 |
| Cow position: | chr24:39833736-39833550 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 341-517 |
| Cow position: | chr24:22079239-22079418 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 365-505 |
| Cow position: | chr24:30897735-30897594 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 385-501 |
| Cow position: | chr24:18357230-18357115 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 386-523 |
| Cow position: | chr24:37037723-37037860 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 40 |
Show alignments to all cow chromosomes.