Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 190-501 |
| Cow position: | chr27:28038032-28038349 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 36, 78 |
| Conread position: | 238-507 |
| Cow position: | chr27:22171554-22171286 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 241-490 |
| Cow position: | chr27:11762491-11762731 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 242-490 |
| Cow position: | chr27:8629627-8629870 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 17 |
| Conread position: | 242-491 |
| Cow position: | chr27:815612-815368 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 16 |
| Conread position: | 245-511 |
| Cow position: | chr27:30890532-30890268 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 92 |
| Conread position: | 248-501 |
| Cow position: | chr27:22220799-22220548 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 179 |
| Conread position: | 251-510 |
| Cow position: | chr27:27259848-27259592 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 251-516 |
| Cow position: | chr27:30406789-30407063 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 150 |
| Conread position: | 252-507 |
| Cow position: | chr27:27388791-27389032 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 253-501 |
| Cow position: | chr27:7212482-7212719 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 14, 75 |
| Conread position: | 253-523 |
| Cow position: | chr27:22418527-22418798 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 254-512 |
| Cow position: | chr27:6550690-6550438 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 254-512 |
| Cow position: | chr27:19388256-19387995 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 254-521 |
| Cow position: | chr27:1123257-1123004 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 33 |
| Conread position: | 255-523 |
| Cow position: | chr27:23070125-23070387 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 43 |
| Conread position: | 258-511 |
| Cow position: | chr27:26424357-26424604 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 86, 28 |
| Conread position: | 258-523 |
| Cow position: | chr27:23576307-23576566 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 161 |
| Conread position: | 260-520 |
| Cow position: | chr27:4673251-4672991 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 123 |
| Conread position: | 265-506 |
| Cow position: | chr27:30792712-30792950 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 266-499 |
| Cow position: | chr27:17473037-17472803 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 158, 110 |
| Conread position: | 266-520 |
| Cow position: | chr27:23483447-23483199 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 100 |
| Conread position: | 267-514 |
| Cow position: | chr27:12596980-12596743 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 267-516 |
| Cow position: | chr27:30527389-30527155 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 226, 37 |
| Conread position: | 267-520 |
| Cow position: | chr27:27632386-27632631 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 187, 125 |
| Conread position: | 268-518 |
| Cow position: | chr27:29493695-29493930 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 180, 31 |
| Conread position: | 277-511 |
| Cow position: | chr27:28164198-28164425 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 175, 62 |
| Conread position: | 277-518 |
| Cow position: | chr27:16871706-16871939 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 172, 22 |
| Conread position: | 283-512 |
| Cow position: | chr27:1498521-1498296 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 167, 68 |
| Conread position: | 285-518 |
| Cow position: | chr27:19685509-19685736 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 93 |
| Conread position: | 289-523 |
| Cow position: | chr27:22330469-22330701 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 150, 10 |
| Conread position: | 302-492 |
| Cow position: | chr27:22547216-22547407 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 305-510 |
| Cow position: | chr27:30988983-30988779 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 122, 87 |
| Conread position: | 309-513 |
| Cow position: | chr27:8353658-8353452 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 321-507 |
| Cow position: | chr27:15408874-15409048 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 351-492 |
| Cow position: | chr27:17331642-17331500 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 363-513 |
| Cow position: | chr27:16103936-16103787 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 36 |
| Conread position: | 383-519 |
| Cow position: | chr27:26226179-26226315 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 385-520 |
| Cow position: | chr27:16626006-16625872 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 66, 25 |
| Conread position: | 386-516 |
| Cow position: | chr27:30804448-30804318 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 89 |
| Conread position: | 390-523 |
| Cow position: | chr27:22386974-22386840 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 127 |
| Conread position: | 393-518 |
| Cow position: | chr27:20481276-20481398 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 400-523 |
| Cow position: | chr27:23511084-23510959 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.