Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 229-516 |
| Cow position: | chr28:25701156-25700888 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 197, 29 |
| Conread position: | 242-509 |
| Cow position: | chr28:3914425-3914688 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 16 |
| Conread position: | 242-511 |
| Cow position: | chr28:13693464-13693731 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 242-518 |
| Cow position: | chr28:8787265-8787526 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 242-520 |
| Cow position: | chr28:4536185-4536442 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 207, 16 |
| Conread position: | 242-523 |
| Cow position: | chr28:5904451-5904722 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 246-513 |
| Cow position: | chr28:10172697-10172431 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 16, 191 |
| Conread position: | 250-523 |
| Cow position: | chr28:5203923-5204184 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 251-523 |
| Cow position: | chr28:27428474-27428736 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 11, 109 |
| Conread position: | 253-502 |
| Cow position: | chr28:5129002-5128761 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 254-505 |
| Cow position: | chr28:2800969-2801209 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 111, 45 |
| Conread position: | 254-506 |
| Cow position: | chr28:10534206-10533960 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 54 |
| Conread position: | 254-515 |
| Cow position: | chr28:15375099-15374837 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 168, 19 |
| Conread position: | 254-520 |
| Cow position: | chr28:22308384-22308632 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 169, 44 |
| Conread position: | 254-520 |
| Cow position: | chr28:28163819-28164075 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 254-523 |
| Cow position: | chr28:12619288-12619560 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 258-512 |
| Cow position: | chr28:5826675-5826934 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 258-517 |
| Cow position: | chr28:11426815-11426557 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 54 |
| Conread position: | 258-518 |
| Cow position: | chr28:13474035-13474286 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 42 |
| Conread position: | 262-461 |
| Cow position: | chr28:11924083-11923884 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 263-519 |
| Cow position: | chr28:10744944-10745199 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 119 |
| Conread position: | 265-518 |
| Cow position: | chr28:7549325-7549074 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 34 |
| Conread position: | 265-518 |
| Cow position: | chr28:24966125-24966371 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 68, 34 |
| Conread position: | 265-518 |
| Cow position: | chr28:26614632-26614867 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 186, 41 |
| Conread position: | 265-518 |
| Cow position: | chr28:34443027-34442769 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 132, 250 |
| Conread position: | 265-519 |
| Cow position: | chr28:2961085-2960846 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 265-519 |
| Cow position: | chr28:9390628-9390378 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 265-523 |
| Cow position: | chr28:24672010-24672254 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 157, 90 |
| Conread position: | 268-512 |
| Cow position: | chr28:21868192-21868437 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 31 |
| Conread position: | 268-520 |
| Cow position: | chr28:3493044-3492797 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 76, 31 |
| Conread position: | 271-521 |
| Cow position: | chr28:21844699-21844946 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 28 |
| Conread position: | 274-523 |
| Cow position: | chr28:13607631-13607878 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 276-501 |
| Cow position: | chr28:2862609-2862834 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 208 |
| Conread position: | 276-522 |
| Cow position: | chr28:11687285-11687037 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 276-523 |
| Cow position: | chr28:25596380-25596619 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 228, 90 |
| Conread position: | 277-511 |
| Cow position: | chr28:8022362-8022130 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 172, 70 |
| Conread position: | 277-523 |
| Cow position: | chr28:23775793-23776037 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 170 |
| Conread position: | 278-520 |
| Cow position: | chr28:2905330-2905561 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 279-490 |
| Cow position: | chr28:2898746-2898957 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 148, 97 |
| Conread position: | 280-501 |
| Cow position: | chr28:28414422-28414643 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 178, 19 |
| Conread position: | 283-502 |
| Cow position: | chr28:14649102-14649319 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 290-518 |
| Cow position: | chr28:4914340-4914106 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 291-518 |
| Cow position: | chr28:5658317-5658538 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 157, 8 |
| Conread position: | 294-521 |
| Cow position: | chr28:11884757-11884531 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 65 |
| Conread position: | 299-493 |
| Cow position: | chr28:12951203-12951391 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 127, 75 |
| Conread position: | 303-523 |
| Cow position: | chr28:4016304-4016520 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 308-505 |
| Cow position: | chr28:9108221-9108420 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 309-508 |
| Cow position: | chr28:5188621-5188427 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 118, 67 |
| Conread position: | 325-518 |
| Cow position: | chr28:4090248-4090060 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 124, 51 |
| Conread position: | 341-513 |
| Cow position: | chr28:26982934-26982755 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 350-513 |
| Cow position: | chr28:14720956-14720796 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 76, 26 |
| Conread position: | 400-520 |
| Cow position: | chr28:11079175-11079294 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 5 |
Show alignments to all cow chromosomes.