Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 219-506 |
| Cow position: | chr3:22954184-22953913 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 219-511 |
| Cow position: | chr3:53790885-53790587 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 222-501 |
| Cow position: | chr3:4031635-4031911 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 238-512 |
| Cow position: | chr3:71430527-71430256 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 241-479 |
| Cow position: | chr3:73467302-73467542 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 104 |
| Conread position: | 242-507 |
| Cow position: | chr3:59798940-59799194 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 242-509 |
| Cow position: | chr3:21341277-21341013 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 16 |
| Conread position: | 242-518 |
| Cow position: | chr3:69751015-69750746 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 242-518 |
| Cow position: | chr3:70566052-70565783 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 251-490 |
| Cow position: | chr3:70401598-70401831 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 197, 7 |
| Conread position: | 251-510 |
| Cow position: | chr3:66610147-66609892 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 17, 111 |
| Conread position: | 252-523 |
| Cow position: | chr3:27274236-27274491 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 253-513 |
| Cow position: | chr3:58969200-58968947 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 254-472 |
| Cow position: | chr3:59514808-59515016 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 194, 122 |
| Conread position: | 254-490 |
| Cow position: | chr3:79292529-79292759 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 23, 124 |
| Conread position: | 254-499 |
| Cow position: | chr3:55117275-55117026 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 254-509 |
| Cow position: | chr3:2506785-2506526 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 254-510 |
| Cow position: | chr3:15057900-15057660 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 254-516 |
| Cow position: | chr3:82657391-82657129 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 254-518 |
| Cow position: | chr3:78076886-78077150 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 206 |
| Conread position: | 254-520 |
| Cow position: | chr3:23169376-23169106 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 215 |
| Conread position: | 254-520 |
| Cow position: | chr3:55272346-55272088 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 254-520 |
| Cow position: | chr3:83474443-83474701 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 254-521 |
| Cow position: | chr3:62826926-62826660 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 249 |
| Conread position: | 254-522 |
| Cow position: | chr3:29891723-29891450 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 14, 90 |
| Conread position: | 254-522 |
| Cow position: | chr3:60597247-60597503 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 254-524 |
| Cow position: | chr3:34270628-34270879 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 142, 45 |
| Conread position: | 255-492 |
| Cow position: | chr3:26894366-26894593 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 194, 44 |
| Conread position: | 258-492 |
| Cow position: | chr3:49327644-49327873 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 62 |
| Conread position: | 258-497 |
| Cow position: | chr3:12323769-12324011 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 170, 29 |
| Conread position: | 258-502 |
| Cow position: | chr3:55190049-55189815 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 258-512 |
| Cow position: | chr3:81371357-81371597 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 258-513 |
| Cow position: | chr3:26219360-26219099 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 137, 54 |
| Conread position: | 258-523 |
| Cow position: | chr3:13353061-13353324 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 41 |
| Conread position: | 262-502 |
| Cow position: | chr3:34316259-34316016 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 159, 188 |
| Conread position: | 265-474 |
| Cow position: | chr3:72123-72327 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 265-511 |
| Cow position: | chr3:57554139-57553897 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 265-521 |
| Cow position: | chr3:32619135-32618880 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 40, 240 |
| Conread position: | 266-501 |
| Cow position: | chr3:8591634-8591418 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 160, 46 |
| Conread position: | 266-508 |
| Cow position: | chr3:56059516-56059755 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 100 |
| Conread position: | 266-516 |
| Cow position: | chr3:53150036-53150283 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 102 |
| Conread position: | 267-507 |
| Cow position: | chr3:27544619-27544386 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 160, 109 |
| Conread position: | 267-523 |
| Cow position: | chr3:56659-56417 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 94, 32 |
| Conread position: | 270-521 |
| Cow position: | chr3:73443374-73443126 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 112 |
| Conread position: | 272-507 |
| Cow position: | chr3:61278621-61278862 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 152, 114 |
| Conread position: | 272-523 |
| Cow position: | chr3:19789404-19789154 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 182 |
| Conread position: | 273-502 |
| Cow position: | chr3:59208530-59208756 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 175, 105 |
| Conread position: | 276-510 |
| Cow position: | chr3:81277985-81277748 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 276-521 |
| Cow position: | chr3:26682074-26681842 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 238, 23 |
| Conread position: | 276-523 |
| Cow position: | chr3:80564682-80564927 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 173, 22 |
| Conread position: | 277-507 |
| Cow position: | chr3:75158085-75158306 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 171, 91 |
| Conread position: | 277-512 |
| Cow position: | chr3:26065721-26065956 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 119 |
| Conread position: | 277-523 |
| Cow position: | chr3:74409215-74409445 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 173, 30 |
| Conread position: | 278-512 |
| Cow position: | chr3:20437924-20437701 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 173, 21 |
| Conread position: | 280-518 |
| Cow position: | chr3:23408619-23408391 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 282-502 |
| Cow position: | chr3:7331394-7331171 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 283-510 |
| Cow position: | chr3:54945851-54946078 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 29 |
| Conread position: | 287-516 |
| Cow position: | chr3:70899630-70899851 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 206, 94 |
| Conread position: | 290-506 |
| Cow position: | chr3:7366144-7365938 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 302-519 |
| Cow position: | chr3:26970570-26970787 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 146, 67 |
| Conread position: | 308-520 |
| Cow position: | chr3:44932259-44932473 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 308-523 |
| Cow position: | chr3:15052194-15051988 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 140, 51 |
| Conread position: | 309-523 |
| Cow position: | chr3:15752876-15752671 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 181, 57 |
| Conread position: | 321-512 |
| Cow position: | chr3:13507227-13507416 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 322-517 |
| Cow position: | chr3:188624-188820 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 325-512 |
| Cow position: | chr3:68156498-68156687 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 47, 80 |
| Conread position: | 328-522 |
| Cow position: | chr3:23105595-23105403 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 120, 40 |
| Conread position: | 331-518 |
| Cow position: | chr3:60265462-60265286 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 118, 47 |
| Conread position: | 341-523 |
| Cow position: | chr3:15859887-15859706 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 342-509 |
| Cow position: | chr3:6772813-6772644 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 164 |
| Conread position: | 342-516 |
| Cow position: | chr3:70609407-70609580 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 141 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 357-519 |
| Cow position: | chr3:53095140-53094975 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 141 |
| Conread position: | 368-523 |
| Cow position: | chr3:74079832-74079676 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 80, 149 |
| Conread position: | 378-509 |
| Cow position: | chr3:20678018-20677887 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 125 |
| Conread position: | 383-492 |
| Cow position: | chr3:76922841-76922731 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 383-511 |
| Cow position: | chr3:70762301-70762171 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 383-518 |
| Cow position: | chr3:36418644-36418507 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 384-502 |
| Cow position: | chr3:54506532-54506645 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 393-513 |
| Cow position: | chr3:34294453-34294331 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.