Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 239-521 |
| Cow position: | chr4:51727782-51728053 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 66, 19 |
| Conread position: | 242-519 |
| Cow position: | chr4:54190801-54191063 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 206, 57 |
| Conread position: | 242-523 |
| Cow position: | chr4:53999818-53999532 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 242-524 |
| Cow position: | chr4:25879099-25879375 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 177, 27 |
| Conread position: | 251-502 |
| Cow position: | chr4:14152784-14153050 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 138, 129 |
| Conread position: | 251-502 |
| Cow position: | chr4:53100513-53100756 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 251-516 |
| Cow position: | chr4:19434972-19435231 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 7 |
| Conread position: | 251-520 |
| Cow position: | chr4:51898713-51898983 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 252-520 |
| Cow position: | chr4:24458384-24458129 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 252-523 |
| Cow position: | chr4:19584412-19584693 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 17, 270 |
| Conread position: | 253-506 |
| Cow position: | chr4:21257417-21257165 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 253-512 |
| Cow position: | chr4:21392092-21391845 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 46 |
| Conread position: | 254-459 |
| Cow position: | chr4:65826142-65825937 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-468 |
| Cow position: | chr4:43543024-43542806 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 195 |
| Conread position: | 254-482 |
| Cow position: | chr4:10412092-10412313 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 254-498 |
| Cow position: | chr4:9136987-9137232 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 254-502 |
| Cow position: | chr4:37915619-37915380 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 254-511 |
| Cow position: | chr4:11671163-11671423 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 134 |
| Conread position: | 254-511 |
| Cow position: | chr4:24002259-24001999 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 10, 90 |
| Conread position: | 254-512 |
| Cow position: | chr4:37703976-37704234 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-516 |
| Cow position: | chr4:20328002-20327734 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 90 |
| Conread position: | 254-523 |
| Cow position: | chr4:11099955-11099690 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 254-523 |
| Cow position: | chr4:19306966-19307237 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 254-523 |
| Cow position: | chr4:36893066-36893336 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 255-500 |
| Cow position: | chr4:63459504-63459255 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 255-518 |
| Cow position: | chr4:2422293-2422558 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 138 |
| Conread position: | 258-513 |
| Cow position: | chr4:275182-275436 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 191, 41 |
| Conread position: | 260-510 |
| Cow position: | chr4:12048961-12049211 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 265-501 |
| Cow position: | chr4:54501725-54501492 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 183, 113 |
| Conread position: | 265-511 |
| Cow position: | chr4:23311536-23311289 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 142, 34 |
| Conread position: | 265-512 |
| Cow position: | chr4:16799468-16799220 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 145, 40 |
| Conread position: | 265-512 |
| Cow position: | chr4:17474161-17474407 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 66, 38 |
| Conread position: | 265-514 |
| Cow position: | chr4:61391477-61391236 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 34 |
| Conread position: | 265-516 |
| Cow position: | chr4:46526723-46526970 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 41, 104 |
| Conread position: | 265-517 |
| Cow position: | chr4:68387516-68387764 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 184, 34 |
| Conread position: | 266-506 |
| Cow position: | chr4:27292234-27291993 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 85 |
| Conread position: | 266-520 |
| Cow position: | chr4:21064764-21065011 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 33 |
| Conread position: | 267-502 |
| Cow position: | chr4:31136481-31136709 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 267-502 |
| Cow position: | chr4:46059013-46058794 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 182, 32 |
| Conread position: | 267-520 |
| Cow position: | chr4:27529839-27530092 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 222 |
| Conread position: | 267-524 |
| Cow position: | chr4:45114880-45114626 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 182, 117 |
| Conread position: | 268-492 |
| Cow position: | chr4:7571136-7571357 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 91 |
| Conread position: | 269-506 |
| Cow position: | chr4:12903546-12903779 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 52 |
| Conread position: | 269-520 |
| Cow position: | chr4:19097020-19097262 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 270-499 |
| Cow position: | chr4:20298998-20299228 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 146 |
| Conread position: | 276-491 |
| Cow position: | chr4:66918636-66918857 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 100, 154 |
| Conread position: | 276-502 |
| Cow position: | chr4:59888864-59888636 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 173, 139 |
| Conread position: | 276-512 |
| Cow position: | chr4:23847316-23847080 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 117 |
| Conread position: | 276-518 |
| Cow position: | chr4:19699834-19700080 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 276-522 |
| Cow position: | chr4:4321271-4321025 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 230 |
| Conread position: | 276-523 |
| Cow position: | chr4:35981724-35981973 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 242 |
| Conread position: | 277-513 |
| Cow position: | chr4:45644577-45644342 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 209 |
| Conread position: | 277-523 |
| Cow position: | chr4:1237380-1237137 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 144, 44 |
| Conread position: | 283-506 |
| Cow position: | chr4:10378840-10379070 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 283-511 |
| Cow position: | chr4:47730604-47730822 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 167, 87 |
| Conread position: | 284-502 |
| Cow position: | chr4:33357674-33357892 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 60 |
| Conread position: | 284-513 |
| Cow position: | chr4:45367479-45367705 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 143, 15 |
| Conread position: | 296-521 |
| Cow position: | chr4:54455589-54455366 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 88 |
| Conread position: | 309-512 |
| Cow position: | chr4:21258984-21259184 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 133, 67 |
| Conread position: | 311-490 |
| Cow position: | chr4:13222406-13222237 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 311-518 |
| Cow position: | chr4:25356536-25356336 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 137, 95 |
| Conread position: | 313-504 |
| Cow position: | chr4:44902215-44902396 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 135, 55 |
| Conread position: | 316-518 |
| Cow position: | chr4:24810672-24810467 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 25, 76 |
| Conread position: | 325-520 |
| Cow position: | chr4:38935142-38935333 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 58 |
| Conread position: | 333-511 |
| Cow position: | chr4:36929105-36929287 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 338-490 |
| Cow position: | chr4:20842717-20842869 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 111, 97 |
| Conread position: | 341-512 |
| Cow position: | chr4:51768912-51769080 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 35 |
| Conread position: | 341-519 |
| Cow position: | chr4:29106699-29106880 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 81, 167 |
| Conread position: | 342-508 |
| Cow position: | chr4:29238242-29238072 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 342-512 |
| Cow position: | chr4:38944464-38944288 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 342-523 |
| Cow position: | chr4:11331890-11332071 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 343-514 |
| Cow position: | chr4:43515524-43515696 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 105, 140 |
| Conread position: | 344-506 |
| Cow position: | chr4:3689511-3689664 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 353-512 |
| Cow position: | chr4:46552508-46552351 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 96, 25 |
| Conread position: | 378-514 |
| Cow position: | chr4:16881530-16881392 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 395-521 |
| Cow position: | chr4:47047743-47047871 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 396-520 |
| Cow position: | chr4:48409415-48409295 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 407-518 |
| Cow position: | chr4:25537407-25537519 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.