Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 219-521 |
| Cow position: | chr5:25035518-25035228 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 9, 52 |
| Conread position: | 237-518 |
| Cow position: | chr5:4797583-4797308 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 26, 134 |
| Conread position: | 239-505 |
| Cow position: | chr5:34638617-34638878 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 21 |
| Conread position: | 241-509 |
| Cow position: | chr5:26046066-26046332 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 242-518 |
| Cow position: | chr5:30276430-30276705 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 16 |
| Conread position: | 242-520 |
| Cow position: | chr5:6045021-6045301 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 242-520 |
| Cow position: | chr5:62827020-62826745 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 242-523 |
| Cow position: | chr5:16206407-16206143 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 153, 16 |
| Conread position: | 251-516 |
| Cow position: | chr5:29903778-29903515 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 7 |
| Conread position: | 251-516 |
| Cow position: | chr5:64321492-64321762 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 7 |
| Conread position: | 251-518 |
| Cow position: | chr5:34049849-34050123 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 17, 135 |
| Conread position: | 251-523 |
| Cow position: | chr5:46510124-46509855 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 7 |
| Conread position: | 253-516 |
| Cow position: | chr5:43858686-43858428 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 97 |
| Conread position: | 253-519 |
| Cow position: | chr5:29680820-29681089 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 104 |
| Conread position: | 254-458 |
| Cow position: | chr5:54875934-54875732 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 169, 43 |
| Conread position: | 254-492 |
| Cow position: | chr5:47601563-47601800 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 45 |
| Conread position: | 254-497 |
| Cow position: | chr5:20555006-20554761 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 254-502 |
| Cow position: | chr5:33661597-33661848 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 196 |
| Conread position: | 254-507 |
| Cow position: | chr5:34506183-34505934 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 254-508 |
| Cow position: | chr5:44848268-44848023 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 254-509 |
| Cow position: | chr5:21524907-21525168 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 246 |
| Conread position: | 254-509 |
| Cow position: | chr5:65933185-65932930 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 254-509 |
| Cow position: | chr5:66257388-66257636 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 76 |
| Conread position: | 254-513 |
| Cow position: | chr5:16894026-16893768 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 15 |
| Conread position: | 254-514 |
| Cow position: | chr5:61030486-61030220 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 254-514 |
| Cow position: | chr5:65887271-65887002 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-517 |
| Cow position: | chr5:51357759-51357496 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 242 |
| Conread position: | 254-517 |
| Cow position: | chr5:56523917-56524175 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 254-518 |
| Cow position: | chr5:65924958-65924684 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 14, 97 |
| Conread position: | 254-520 |
| Cow position: | chr5:21617198-21617465 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 123 |
| Conread position: | 254-523 |
| Cow position: | chr5:24485667-24485424 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 194, 30 |
| Conread position: | 254-523 |
| Cow position: | chr5:52165436-52165167 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 45 |
| Conread position: | 256-523 |
| Cow position: | chr5:51999967-52000233 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 43 |
| Conread position: | 258-512 |
| Cow position: | chr5:27015442-27015681 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 192, 19 |
| Conread position: | 259-502 |
| Cow position: | chr5:28330584-28330342 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 9, 118 |
| Conread position: | 263-502 |
| Cow position: | chr5:21828619-21828857 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 119 |
| Conread position: | 263-511 |
| Cow position: | chr5:35684689-35684936 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 263-513 |
| Cow position: | chr5:55967128-55966875 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 263-523 |
| Cow position: | chr5:40109256-40109503 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 264-511 |
| Cow position: | chr5:45940851-45940614 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 76 |
| Conread position: | 265-476 |
| Cow position: | chr5:41392502-41392702 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 156, 64 |
| Conread position: | 265-502 |
| Cow position: | chr5:31469826-31469591 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 161, 55 |
| Conread position: | 265-512 |
| Cow position: | chr5:21944138-21944398 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 265-514 |
| Cow position: | chr5:47704378-47704120 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 265-518 |
| Cow position: | chr5:19278936-19278691 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 265-518 |
| Cow position: | chr5:30302655-30302901 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 185, 49 |
| Conread position: | 265-523 |
| Cow position: | chr5:32140948-32140698 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 183, 24 |
| Conread position: | 266-516 |
| Cow position: | chr5:53835475-53835722 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 10 |
| Conread position: | 267-470 |
| Cow position: | chr5:37814382-37814581 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 181, 96 |
| Conread position: | 267-510 |
| Cow position: | chr5:37714146-37713898 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 267-512 |
| Cow position: | chr5:73252855-73253094 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 182, 101 |
| Conread position: | 270-502 |
| Cow position: | chr5:60519928-60520154 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 178, 89 |
| Conread position: | 273-523 |
| Cow position: | chr5:74858338-74858585 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 276-471 |
| Cow position: | chr5:56135201-56135008 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 146, 100 |
| Conread position: | 276-512 |
| Cow position: | chr5:24996456-24996222 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 48 |
| Conread position: | 276-514 |
| Cow position: | chr5:45036788-45037024 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 279-510 |
| Cow position: | chr5:39710610-39710841 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 115, 29 |
| Conread position: | 279-520 |
| Cow position: | chr5:56070624-56070866 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 34 |
| Conread position: | 287-516 |
| Cow position: | chr5:15722275-15722061 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 162, 25 |
| Conread position: | 295-471 |
| Cow position: | chr5:35969329-35969501 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 299-502 |
| Cow position: | chr5:63185463-63185265 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 299-523 |
| Cow position: | chr5:40039980-40039758 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 149, 99 |
| Conread position: | 300-511 |
| Cow position: | chr5:458273-458491 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 124, 70 |
| Conread position: | 309-511 |
| Cow position: | chr5:23169018-23168829 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 313-517 |
| Cow position: | chr5:44447082-44446862 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 321-509 |
| Cow position: | chr5:52040507-52040317 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 100, 55 |
| Conread position: | 321-520 |
| Cow position: | chr5:7044898-7044698 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 129, 183 |
| Conread position: | 333-481 |
| Cow position: | chr5:6286602-6286454 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 115, 46 |
| Conread position: | 335-524 |
| Cow position: | chr5:3549951-3549774 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 345-512 |
| Cow position: | chr5:46512930-46512763 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 103, 149 |
| Conread position: | 368-513 |
| Cow position: | chr5:70952020-70951874 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 374-522 |
| Cow position: | chr5:72951701-72951853 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 380-511 |
| Cow position: | chr5:7921532-7921400 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 380-516 |
| Cow position: | chr5:38647227-38647363 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 383-518 |
| Cow position: | chr5:44726455-44726319 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 400-521 |
| Cow position: | chr5:7697893-7698013 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 94 |
Show alignments to all cow chromosomes.