Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 231-518 |
| Cow position: | chr6:55282557-55282265 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 237-499 |
| Cow position: | chr6:57685903-57686156 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 106, 21 |
| Conread position: | 242-458 |
| Cow position: | chr6:5958267-5958059 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 242-505 |
| Cow position: | chr6:47026226-47026486 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 242-512 |
| Cow position: | chr6:32287369-32287653 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 246-518 |
| Cow position: | chr6:54365570-54365309 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 251-501 |
| Cow position: | chr6:36470807-36470562 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 251-502 |
| Cow position: | chr6:12551026-12551273 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 251-512 |
| Cow position: | chr6:46465582-46465840 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 251-520 |
| Cow position: | chr6:18961764-18961494 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 107, 7 |
| Conread position: | 252-484 |
| Cow position: | chr6:1784013-1783790 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 175, 7 |
| Conread position: | 253-490 |
| Cow position: | chr6:34196389-34196157 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 199, 115 |
| Conread position: | 253-523 |
| Cow position: | chr6:62479409-62479136 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 254-498 |
| Cow position: | chr6:24902380-24902143 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 167, 16 |
| Conread position: | 254-507 |
| Cow position: | chr6:18447751-18447499 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 254-507 |
| Cow position: | chr6:31525809-31526055 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 194, 45 |
| Conread position: | 254-512 |
| Cow position: | chr6:67044727-67044972 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 254-513 |
| Cow position: | chr6:44098845-44099103 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 152, 45 |
| Conread position: | 254-518 |
| Cow position: | chr6:23695755-23696015 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 254-519 |
| Cow position: | chr6:52478668-52478391 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 254-523 |
| Cow position: | chr6:15242593-15242858 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 254-523 |
| Cow position: | chr6:16410953-16411215 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 206 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-523 |
| Cow position: | chr6:54991235-54990978 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 255-468 |
| Cow position: | chr6:61631857-61631637 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 74, 5 |
| Conread position: | 258-482 |
| Cow position: | chr6:2012783-2013004 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 125 |
| Conread position: | 258-510 |
| Cow position: | chr6:8637036-8637292 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 119 |
| Conread position: | 258-515 |
| Cow position: | chr6:65870788-65871047 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 254 |
| Conread position: | 258-517 |
| Cow position: | chr6:35471762-35471498 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 258-519 |
| Cow position: | chr6:1770431-1770178 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 79 |
| Conread position: | 262-519 |
| Cow position: | chr6:13040222-13040471 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 263-493 |
| Cow position: | chr6:1474965-1475184 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 263-512 |
| Cow position: | chr6:21542089-21542334 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 115 |
| Conread position: | 265-510 |
| Cow position: | chr6:54885142-54884896 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 109 |
| Conread position: | 265-512 |
| Cow position: | chr6:38853887-38853640 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 178 |
| Conread position: | 265-518 |
| Cow position: | chr6:17414682-17414428 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 266-500 |
| Cow position: | chr6:32210854-32210625 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 33 |
| Conread position: | 266-518 |
| Cow position: | chr6:4383265-4383509 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 33 |
| Conread position: | 266-518 |
| Cow position: | chr6:57164202-57164448 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 166, 48 |
| Conread position: | 267-502 |
| Cow position: | chr6:28977258-28977039 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 111 |
| Conread position: | 267-512 |
| Cow position: | chr6:45065233-45065002 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 92 |
| Conread position: | 273-513 |
| Cow position: | chr6:7190340-7190102 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 148, 103 |
| Conread position: | 273-523 |
| Cow position: | chr6:23248184-23247938 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 179 |
| Conread position: | 275-501 |
| Cow position: | chr6:15923216-15922995 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 178, 24 |
| Conread position: | 277-506 |
| Cow position: | chr6:48344111-48344341 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 277-513 |
| Cow position: | chr6:5609657-5609430 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 278-507 |
| Cow position: | chr6:899500-899280 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 179 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 172, 43 |
| Conread position: | 281-493 |
| Cow position: | chr6:31564546-31564343 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 281-520 |
| Cow position: | chr6:24961932-24962164 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 287-519 |
| Cow position: | chr6:61137158-61137395 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 290-523 |
| Cow position: | chr6:38641294-38641521 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 158, 90 |
| Conread position: | 291-518 |
| Cow position: | chr6:6400745-6400973 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 79, 118 |
| Conread position: | 297-492 |
| Cow position: | chr6:63720002-63720190 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 147, 65 |
| Conread position: | 301-511 |
| Cow position: | chr6:36652226-36652433 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 144, 76 |
| Conread position: | 321-523 |
| Cow position: | chr6:11246591-11246790 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 128, 38 |
| Conread position: | 322-524 |
| Cow position: | chr6:17334229-17334028 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 325-519 |
| Cow position: | chr6:27888178-27888371 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 333-524 |
| Cow position: | chr6:12543094-12542905 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 115, 43 |
| Conread position: | 336-520 |
| Cow position: | chr6:61608349-61608533 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 151 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 112, 167 |
| Conread position: | 341-505 |
| Cow position: | chr6:7128553-7128398 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 108, 37 |
| Conread position: | 345-495 |
| Cow position: | chr6:22254136-22253986 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 377-511 |
| Cow position: | chr6:25615223-25615089 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 37 |
Show alignments to all cow chromosomes.