Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 226-523 |
| Cow position: | chr8:31253515-31253808 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 17, 6 |
| Conread position: | 229-492 |
| Cow position: | chr8:36055698-36055435 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 29 |
| Conread position: | 251-501 |
| Cow position: | chr8:35457114-35456867 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 170, 7 |
| Conread position: | 251-509 |
| Cow position: | chr8:38893736-38893991 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 251-520 |
| Cow position: | chr8:17103692-17103424 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 49 |
| Conread position: | 251-521 |
| Cow position: | chr8:55925925-55926195 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 186 |
| Conread position: | 251-522 |
| Cow position: | chr8:10456198-10456461 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 251-523 |
| Cow position: | chr8:23179818-23179546 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 48 |
| Conread position: | 254-492 |
| Cow position: | chr8:16938722-16938491 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 14, 120 |
| Conread position: | 254-502 |
| Cow position: | chr8:38464740-38464985 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 254-505 |
| Cow position: | chr8:25579269-25579514 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 254-520 |
| Cow position: | chr8:3015202-3015468 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 98 |
| Conread position: | 254-520 |
| Cow position: | chr8:33407104-33406855 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 12 |
| Conread position: | 254-522 |
| Cow position: | chr8:32621269-32620995 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 254-523 |
| Cow position: | chr8:554458-554190 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 114 |
| Conread position: | 254-523 |
| Cow position: | chr8:24390467-24390201 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 258-492 |
| Cow position: | chr8:25628082-25628314 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 156 |
| Conread position: | 258-510 |
| Cow position: | chr8:38357115-38356863 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 163, 107 |
| Conread position: | 258-518 |
| Cow position: | chr8:20355026-20354773 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 238, 47 |
| Conread position: | 258-520 |
| Cow position: | chr8:32093617-32093873 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 190, 113 |
| Conread position: | 258-523 |
| Cow position: | chr8:39721397-39721664 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 125 |
| Conread position: | 263-510 |
| Cow position: | chr8:44437507-44437751 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 43, 114 |
| Conread position: | 263-517 |
| Cow position: | chr8:10176404-10176151 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 36 |
| Conread position: | 265-464 |
| Cow position: | chr8:39475181-39475380 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 97, 134 |
| Conread position: | 265-502 |
| Cow position: | chr8:20355412-20355196 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 265-513 |
| Cow position: | chr8:48528212-48527975 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 265-516 |
| Cow position: | chr8:31775925-31776180 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 265-516 |
| Cow position: | chr8:33993910-33994156 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 173, 21 |
| Conread position: | 265-520 |
| Cow position: | chr8:10970569-10970826 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 195 |
| Conread position: | 265-521 |
| Cow position: | chr8:8513882-8513628 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 157, 145 |
| Conread position: | 266-489 |
| Cow position: | chr8:10434551-10434771 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 182, 75 |
| Conread position: | 266-512 |
| Cow position: | chr8:49265566-49265320 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 183, 127 |
| Conread position: | 266-513 |
| Cow position: | chr8:15395112-15394873 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 161, 110 |
| Conread position: | 266-523 |
| Cow position: | chr8:1834664-1834916 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 161, 110 |
| Conread position: | 266-523 |
| Cow position: | chr8:10263420-10263170 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 54 |
| Conread position: | 267-505 |
| Cow position: | chr8:16053285-16053512 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 267-512 |
| Cow position: | chr8:42794568-42794332 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 267-516 |
| Cow position: | chr8:20108039-20107792 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 103, 32 |
| Conread position: | 267-519 |
| Cow position: | chr8:48775559-48775811 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 159, 109 |
| Conread position: | 268-510 |
| Cow position: | chr8:1393975-1394212 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 159, 40 |
| Conread position: | 268-521 |
| Cow position: | chr8:40033072-40032820 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 236 |
| Conread position: | 269-503 |
| Cow position: | chr8:22103436-22103205 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 108 |
| Conread position: | 269-513 |
| Cow position: | chr8:2814366-2814610 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 50 |
| Conread position: | 270-506 |
| Cow position: | chr8:37122718-37122954 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 178, 90 |
| Conread position: | 271-517 |
| Cow position: | chr8:60989396-60989627 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 178, 28 |
| Conread position: | 273-501 |
| Cow position: | chr8:1297266-1297486 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 276-518 |
| Cow position: | chr8:6724588-6724348 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 133 |
| Conread position: | 276-520 |
| Cow position: | chr8:34477867-34478112 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 241 |
| Conread position: | 278-498 |
| Cow position: | chr8:2953389-2953604 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 85 |
| Conread position: | 278-511 |
| Cow position: | chr8:1023715-1023950 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 278-516 |
| Cow position: | chr8:42762672-42762438 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 174, 85 |
| Conread position: | 279-519 |
| Cow position: | chr8:41627365-41627125 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 147, 97 |
| Conread position: | 279-522 |
| Cow position: | chr8:28412856-28412619 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 149, 77 |
| Conread position: | 283-502 |
| Cow position: | chr8:2897861-2897642 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 165, 115 |
| Conread position: | 285-517 |
| Cow position: | chr8:60463278-60463509 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 164, 97 |
| Conread position: | 287-489 |
| Cow position: | chr8:1596408-1596206 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 135, 80 |
| Conread position: | 290-523 |
| Cow position: | chr8:20683739-20683967 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 146, 60 |
| Conread position: | 294-505 |
| Cow position: | chr8:19818350-19818144 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 299-510 |
| Cow position: | chr8:5979719-5979923 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 150, 20 |
| Conread position: | 299-514 |
| Cow position: | chr8:36464981-36465197 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 128, 58 |
| Conread position: | 300-523 |
| Cow position: | chr8:4205702-4205921 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 148, 105 |
| Conread position: | 303-518 |
| Cow position: | chr8:4591293-4591084 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 146, 73 |
| Conread position: | 309-521 |
| Cow position: | chr8:31297054-31297264 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 140, 26 |
| Conread position: | 315-523 |
| Cow position: | chr8:37433413-37433620 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 134, 188 |
| Conread position: | 318-512 |
| Cow position: | chr8:6485141-6484947 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 68 |
| Conread position: | 320-510 |
| Cow position: | chr8:57397735-57397547 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 127, 66 |
| Conread position: | 324-516 |
| Cow position: | chr8:28313924-28313728 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 125, 33 |
| Conread position: | 325-520 |
| Cow position: | chr8:8190267-8190072 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 5, 73 |
| Conread position: | 328-523 |
| Cow position: | chr8:39174445-39174248 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 341-523 |
| Cow position: | chr8:39100659-39100839 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 111, 162 |
| Conread position: | 342-519 |
| Cow position: | chr8:35932244-35932424 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 14 |
| Conread position: | 343-511 |
| Cow position: | chr8:20150741-20150570 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 83, 95 |
| Conread position: | 346-512 |
| Cow position: | chr8:60126675-60126839 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 32 |
| Conread position: | 349-524 |
| Cow position: | chr8:37636165-37635998 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 102, 49 |
| Conread position: | 351-516 |
| Cow position: | chr8:35596931-35596767 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 98, 23 |
| Conread position: | 362-523 |
| Cow position: | chr8:55897970-55897819 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 380-524 |
| Cow position: | chr8:35563184-35563332 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 70, 140 |
| Conread position: | 393-506 |
| Cow position: | chr8:45447236-45447122 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.