Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 223-512 |
| Cow position: | chr9:5209925-5209635 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 232-518 |
| Cow position: | chr9:57896794-57897070 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 234-518 |
| Cow position: | chr9:45285199-45285479 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 137 |
| Conread position: | 242-501 |
| Cow position: | chr9:22227765-22228018 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 242-502 |
| Cow position: | chr9:34957732-34957989 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 16 |
| Conread position: | 242-508 |
| Cow position: | chr9:60037976-60037711 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 242-512 |
| Cow position: | chr9:19542228-19541960 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 163, 16 |
| Conread position: | 242-513 |
| Cow position: | chr9:5218860-5219117 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 210, 16 |
| Conread position: | 250-510 |
| Cow position: | chr9:7634580-7634329 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 251-498 |
| Cow position: | chr9:19539408-19539157 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 7 |
| Conread position: | 251-500 |
| Cow position: | chr9:5442300-5442057 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 158, 7 |
| Conread position: | 251-509 |
| Cow position: | chr9:21888480-21888222 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 170, 7 |
| Conread position: | 251-516 |
| Cow position: | chr9:56773394-56773132 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 18, 89 |
| Conread position: | 251-521 |
| Cow position: | chr9:50606642-50606906 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 252-501 |
| Cow position: | chr9:36490581-36490827 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 14, 122 |
| Conread position: | 253-512 |
| Cow position: | chr9:64092000-64091739 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 254 |
| Conread position: | 253-521 |
| Cow position: | chr9:28773430-28773167 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 254-468 |
| Cow position: | chr9:18252618-18252825 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 171, 38 |
| Conread position: | 254-492 |
| Cow position: | chr9:5226853-5227097 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 254-501 |
| Cow position: | chr9:41513928-41513688 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 173, 124 |
| Conread position: | 254-510 |
| Cow position: | chr9:29006872-29006618 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 105 |
| Conread position: | 254-512 |
| Cow position: | chr9:38344207-38343944 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 254-516 |
| Cow position: | chr9:5141385-5141130 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 254-520 |
| Cow position: | chr9:20848248-20847977 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 254-523 |
| Cow position: | chr9:9552397-9552135 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 16, 115 |
| Conread position: | 254-523 |
| Cow position: | chr9:37528768-37528496 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 14, 119 |
| Conread position: | 256-512 |
| Cow position: | chr9:45141311-45141550 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 193, 43 |
| Conread position: | 258-490 |
| Cow position: | chr9:39971338-39971120 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 191, 75 |
| Conread position: | 258-502 |
| Cow position: | chr9:5393355-5393111 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 190, 47 |
| Conread position: | 258-522 |
| Cow position: | chr9:44831752-44832009 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 115, 41 |
| Conread position: | 259-524 |
| Cow position: | chr9:22361319-22361054 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 55 |
| Conread position: | 263-492 |
| Cow position: | chr9:17871806-17872033 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 263-501 |
| Cow position: | chr9:31078784-31079018 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 52 |
| Conread position: | 265-502 |
| Cow position: | chr9:10144176-10144413 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 11 |
| Conread position: | 265-502 |
| Cow position: | chr9:11299399-11299627 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 61 |
| Conread position: | 265-523 |
| Cow position: | chr9:22114335-22114592 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 183, 124 |
| Conread position: | 266-523 |
| Cow position: | chr9:36999764-37000016 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 156, 102 |
| Conread position: | 267-512 |
| Cow position: | chr9:61022906-61022664 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 82, 52 |
| Conread position: | 267-523 |
| Cow position: | chr9:49404050-49403804 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 269-521 |
| Cow position: | chr9:23430852-23431100 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 224, 17 |
| Conread position: | 270-490 |
| Cow position: | chr9:36067198-36066984 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 161, 29 |
| Conread position: | 271-523 |
| Cow position: | chr9:29825321-29825079 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 178, 28 |
| Conread position: | 276-476 |
| Cow position: | chr9:43912216-43912016 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 108, 103 |
| Conread position: | 277-524 |
| Cow position: | chr9:5029801-5029552 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 166, 99 |
| Conread position: | 279-511 |
| Cow position: | chr9:24997232-24997464 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 111, 61 |
| Conread position: | 284-516 |
| Cow position: | chr9:8563120-8562887 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 294-513 |
| Cow position: | chr9:41653058-41652835 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 295-520 |
| Cow position: | chr9:34287062-34286847 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 154, 56 |
| Conread position: | 296-493 |
| Cow position: | chr9:11068202-11068398 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 95, 54 |
| Conread position: | 299-500 |
| Cow position: | chr9:23541154-23541342 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 149, 72 |
| Conread position: | 301-490 |
| Cow position: | chr9:38846087-38846268 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 303-490 |
| Cow position: | chr9:38875314-38875501 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 119, 75 |
| Conread position: | 314-507 |
| Cow position: | chr9:33119633-33119827 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 316-502 |
| Cow position: | chr9:61493274-61493084 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 92, 88 |
| Conread position: | 339-502 |
| Cow position: | chr9:32829792-32829943 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 340-516 |
| Cow position: | chr9:31090676-31090502 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 81, 154 |
| Conread position: | 353-492 |
| Cow position: | chr9:61303217-61303077 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 368-502 |
| Cow position: | chr9:4340971-4341106 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 370-492 |
| Cow position: | chr9:12910202-12910328 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 374-520 |
| Cow position: | chr9:41728448-41728306 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 388-511 |
| Cow position: | chr9:49292970-49293092 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 10 |
Show alignments to all cow chromosomes.