Cow genome map
| Conread name: | rpigcf0_003920.y1 |
| Conread position: | 229-486 |
| Cow position: | chrX:12249526-12249778 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 14, 124 |
| Conread position: | 234-519 |
| Cow position: | chrX:34411569-34411853 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 242-492 |
| Cow position: | chrX:42086598-42086839 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 242-511 |
| Cow position: | chrX:40647714-40647988 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 14 |
| Conread position: | 242-514 |
| Cow position: | chrX:19188672-19188942 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 185, 16 |
| Conread position: | 242-519 |
| Cow position: | chrX:40269212-40269498 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 16 |
| Conread position: | 242-523 |
| Cow position: | chrX:11718044-11717772 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 251-507 |
| Cow position: | chrX:17743804-17744061 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 251-509 |
| Cow position: | chrX:6563255-6563520 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 251-512 |
| Cow position: | chrX:45414555-45414298 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 7 |
| Conread position: | 251-523 |
| Cow position: | chrX:13785624-13785349 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 11, 67 |
| Conread position: | 253-502 |
| Cow position: | chrX:35388164-35387910 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 254-511 |
| Cow position: | chrX:40557932-40557680 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 108 |
| Conread position: | 254-512 |
| Cow position: | chrX:25337921-25338187 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 254-516 |
| Cow position: | chrX:6413790-6414056 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 15, 92 |
| Conread position: | 254-520 |
| Cow position: | chrX:14884220-14883948 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 254-523 |
| Cow position: | chrX:38963856-38964119 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 45 |
| Conread position: | 254-523 |
| Cow position: | chrX:42171552-42171283 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 45 |
| Conread position: | 254-523 |
| Cow position: | chrX:42994358-42994624 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 96 |
| Conread position: | 255-506 |
| Cow position: | chrX:34192425-34192667 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 256-521 |
| Cow position: | chrX:33639720-33639984 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 258-507 |
| Cow position: | chrX:40452462-40452212 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 258-518 |
| Cow position: | chrX:1616300-1616035 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 258-518 |
| Cow position: | chrX:7571657-7571911 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 190, 120 |
| Conread position: | 258-519 |
| Cow position: | chrX:23497912-23497660 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 191, 41 |
| Conread position: | 263-523 |
| Cow position: | chrX:40035695-40035430 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 140 |
| Conread position: | 265-501 |
| Cow position: | chrX:1810403-1810172 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 156, 34 |
| Conread position: | 267-523 |
| Cow position: | chrX:619248-618990 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 267-523 |
| Cow position: | chrX:23514258-23514004 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 59 |
| Conread position: | 269-514 |
| Cow position: | chrX:917607-917360 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 113, 35 |
| Conread position: | 271-509 |
| Cow position: | chrX:11589828-11589587 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 277-488 |
| Cow position: | chrX:42247414-42247208 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 171, 115 |
| Conread position: | 277-490 |
| Cow position: | chrX:42381330-42381122 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 111 |
| Conread position: | 282-502 |
| Cow position: | chrX:4750523-4750312 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 166, 26 |
| Conread position: | 282-518 |
| Cow position: | chrX:21642703-21642470 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 149, 17 |
| Conread position: | 283-511 |
| Cow position: | chrX:17042466-17042694 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 166, 93 |
| Conread position: | 286-515 |
| Cow position: | chrX:37574635-37574849 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 287-501 |
| Cow position: | chrX:46073042-46072829 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 112 |
| Conread position: | 287-523 |
| Cow position: | chrX:29602053-29601817 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 161, 106 |
| Conread position: | 290-516 |
| Cow position: | chrX:37781330-37781104 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 18 |
| Conread position: | 298-524 |
| Cow position: | chrX:8869617-8869389 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 299-520 |
| Cow position: | chrX:45845887-45846110 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 301-512 |
| Cow position: | chrX:36961428-36961647 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 304-512 |
| Cow position: | chrX:17908487-17908282 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 144, 64 |
| Conread position: | 306-519 |
| Cow position: | chrX:47301105-47300896 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 117, 72 |
| Conread position: | 306-519 |
| Cow position: | chrX:47303081-47302870 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 120, 142 |
| Conread position: | 321-492 |
| Cow position: | chrX:31256681-31256848 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 131, 57 |
| Conread position: | 322-479 |
| Cow position: | chrX:35383205-35383048 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 121, 131 |
| Conread position: | 329-499 |
| Cow position: | chrX:9770863-9770687 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 329-512 |
| Cow position: | chrX:31252239-31252423 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 341-513 |
| Cow position: | chrX:34792477-34792304 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 108, 56 |
| Conread position: | 342-523 |
| Cow position: | chrX:14275901-14275732 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 168, 17 |
| Conread position: | 353-512 |
| Cow position: | chrX:27227969-27228130 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 21 |
| Conread position: | 364-523 |
| Cow position: | chrX:9365822-9365665 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 374-523 |
| Cow position: | chrX:5919359-5919503 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 379-522 |
| Cow position: | chrX:40685463-40685318 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 391-508 |
| Cow position: | chrX:26881688-26881570 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.