Cow genome map

Conread name: rpigcf0_004127.y1

Conread position: 1-179
Cow position:
Alignm length: 182
Alignm identity: 132
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 98, 59

Conread position: 1-180
Cow position:
Alignm length: 183
Alignm identity: 132
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 98, 59

Conread position: 1-180
Cow position:
Alignm length: 183
Alignm identity: 131
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 98, 59

Conread position: 1-225
Cow position:
Alignm length: 234
Alignm identity: 162
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 98, 14

Conread position: 1-251
Cow position:
Alignm length: 258
Alignm identity: 185
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 98, 59

Conread position: 1-267
Cow position:
Alignm length: 278
Alignm identity: 200
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 98, 59

Conread position: 1-267
Cow position:
Alignm length: 278
Alignm identity: 196
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 98, 59

Conread position: 1-332
Cow position:
Alignm length: 347
Alignm identity: 241
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 36, 29

Conread position: 1-353
Cow position:
Alignm length: 367
Alignm identity: 232
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 98, 65

Conread position: 1-363
Cow position:
Alignm length: 370
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 59

Conread position: 1-364
Cow position:
Alignm length: 375
Alignm identity: 248
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 98, 59

Conread position: 1-365
Cow position:
Alignm length: 376
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-370
Cow position:
Alignm length: 381
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 65

Conread position: 1-412
Cow position:
Alignm length: 428
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-468
Cow position:
Alignm length: 479
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-468
Cow position:
Alignm length: 478
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 53

Conread position: 1-470
Cow position:
Alignm length: 484
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-475
Cow position:
Alignm length: 489
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 41

Conread position: 1-475
Cow position:
Alignm length: 487
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-477
Cow position:
Alignm length: 488
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-477
Cow position:
Alignm length: 486
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 22

Conread position: 1-477
Cow position:
Alignm length: 489
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 53

Conread position: 1-477
Cow position:
Alignm length: 490
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 59

Conread position: 1-477
Cow position:
Alignm length: 486
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 52

Conread position: 1-477
Cow position:
Alignm length: 488
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-477
Cow position:
Alignm length: 492
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-482
Cow position:
Alignm length: 498
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 34

Conread position: 1-487
Cow position:
Alignm length: 502
Alignm identity: 324
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 98, 59

Conread position: 1-487
Cow position:
Alignm length: 498
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 15

Conread position: 1-488
Cow position:
Alignm length: 500
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 496
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 500
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 499
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 497
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 500
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 500
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 499
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 506
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 501
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 505
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 497
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 59

Conread position: 1-488
Cow position:
Alignm length: 500
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 60

Conread position: 1-488
Cow position:
Alignm length: 498
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 499
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 62

Conread position: 1-488
Cow position:
Alignm length: 498
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 500
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 52

Conread position: 1-488
Cow position:
Alignm length: 496
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 59

Conread position: 1-488
Cow position:
Alignm length: 500
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 503
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 23

Conread position: 1-488
Cow position:
Alignm length: 500
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 53

Conread position: 1-488
Cow position:
Alignm length: 499
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position:
Alignm length: 499
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-489
Cow position:
Alignm length: 497
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 62

Conread position: 1-490
Cow position:
Alignm length: 501
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 52

Conread position: 1-490
Cow position:
Alignm length: 502
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position:
Alignm length: 502
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 59

Conread position: 1-490
Cow position:
Alignm length: 505
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 32

Conread position: 1-490
Cow position:
Alignm length: 502
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position:
Alignm length: 502
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position:
Alignm length: 500
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 47

Conread position: 1-490
Cow position:
Alignm length: 501
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position:
Alignm length: 503
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 53

Conread position: 1-490
Cow position:
Alignm length: 504
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 58

Conread position: 1-490
Cow position:
Alignm length: 501
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-491
Cow position:
Alignm length: 499
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 21

Conread position: 1-491
Cow position:
Alignm length: 503
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 60

Conread position: 1-491
Cow position:
Alignm length: 504
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 2-488
Cow position:
Alignm length: 498
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 58

Conread position: 3-282
Cow position:
Alignm length: 289
Alignm identity: 186
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 59

Conread position: 3-420
Cow position:
Alignm length: 432
Alignm identity: 272
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 18, 60

Conread position: 3-477
Cow position:
Alignm length: 487
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 57

Conread position: 3-487
Cow position:
Alignm length: 495
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 56

Conread position: 3-488
Cow position:
Alignm length: 497
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 57

Conread position: 3-490
Cow position:
Alignm length: 502
Alignm identity: 326
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 96, 36

Conread position: 3-490
Cow position:
Alignm length: 503
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 12

Conread position: 4-490
Cow position:
Alignm length: 502
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 51

Conread position: 5-251
Cow position:
Alignm length: 256
Alignm identity: 184
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 94, 55

Conread position: 5-336
Cow position:
Alignm length: 343
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 55

Conread position: 5-396
Cow position:
Alignm length: 401
Alignm identity: 271
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 41, 56

Conread position: 5-466
Cow position:
Alignm length: 475
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 42

Conread position: 5-496
Cow position:
Alignm length: 496
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 55

Conread position: 6-370
Cow position:
Alignm length: 376
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 54

Conread position: 6-490
Cow position:
Alignm length: 490
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 54

Conread position: 6-490
Cow position:
Alignm length: 497
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 28

Conread position: 8-488
Cow position:
Alignm length: 492
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 52

Conread position: 8-491
Cow position:
Alignm length: 498
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 46

Conread position: 10-376
Cow position:
Alignm length: 370
Alignm identity: 254
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 89, 38

Conread position: 11-375
Cow position:
Alignm length: 375
Alignm identity: 238
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 105, 51

Conread position: 12-490
Cow position:
Alignm length: 492
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 42

Conread position: 16-245
Cow position:
Alignm length: 240
Alignm identity: 177
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 83, 44

Conread position: 16-468
Cow position:
Alignm length: 465
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 44

Conread position: 16-489
Cow position:
Alignm length: 476
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 44

Conread position: 16-490
Cow position:
Alignm length: 487
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 44

Conread position: 17-480
Cow position:
Alignm length: 474
Alignm identity: 311
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 90, 43

Conread position: 18-469
Cow position:
Alignm length: 456
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 35

Conread position: 20-363
Cow position:
Alignm length: 352
Alignm identity: 241
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 72, 40

Conread position: 30-490
Cow position:
Alignm length: 466
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 17

Conread position: 35-488
Cow position:
Alignm length: 468
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 25

Conread position: 42-480
Cow position:
Alignm length: 451
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 18

Conread position: 49-488
Cow position:
Alignm length: 449
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 51-455
Cow position:
Alignm length: 406
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 9

Conread position: 51-477
Cow position:
Alignm length: 439
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 14

Conread position: 53-488
Cow position:
Alignm length: 446
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 53-490
Cow position:
Alignm length: 458
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 54-477
Cow position:
Alignm length: 441
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 6

Conread position: 58-385
Cow position:
Alignm length: 347
Alignm identity: 242
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 41, 63

Conread position: 62-345
Cow position:
Alignm length: 294
Alignm identity: 207
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 40, 227

Conread position: 66-477
Cow position:
Alignm length: 423
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 55

Conread position: 66-488
Cow position:
Alignm length: 434
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 55

Conread position: 69-488
Cow position:
Alignm length: 430
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 52

Conread position: 70-491
Cow position:
Alignm length: 437
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 51

Conread position: 76-420
Cow position:
Alignm length: 348
Alignm identity: 221
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 38

Conread position: 81-482
Cow position:
Alignm length: 410
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 38

Conread position: 86-480
Cow position:
Alignm length: 403
Alignm identity: 255
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 59, 9

Conread position: 91-468
Cow position:
Alignm length: 385
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 18

Conread position: 93-488
Cow position:
Alignm length: 405
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 26

Conread position: 93-490
Cow position:
Alignm length: 409
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 26

Conread position: 100-482
Cow position:
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 100-490
Cow position:
Alignm length: 404
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 114-490
Cow position:
Alignm length: 386
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 174

Conread position: 118-354
Cow position:
Alignm length: 245
Alignm identity: 177
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 64, 152

Conread position: 118-482
Cow position:
Alignm length: 373
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 95

Conread position: 132-488
Cow position:
Alignm length: 366
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 80

Conread position: 132-490
Cow position:
Alignm length: 366
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 155

Conread position: 135-475
Cow position:
Alignm length: 349
Alignm identity: 243
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 46, 153

Conread position: 135-477
Cow position:
Alignm length: 351
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 153

Conread position: 135-488
Cow position:
Alignm length: 362
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 75

Conread position: 138-486
Cow position:
Alignm length: 359
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 140

Conread position: 148-368
Cow position:
Alignm length: 230
Alignm identity: 171
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 34, 140

Conread position: 148-488
Cow position:
Alignm length: 349
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 140

Conread position: 154-477
Cow position:
Alignm length: 332
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 134

Conread position: 174-423
Cow position:
Alignm length: 260
Alignm identity: 186
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 5, 0

Conread position: 178-413
Cow position:
Alignm length: 238
Alignm identity: 177
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 75, 104

Conread position: 178-468
Cow position:
Alignm length: 294
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 28

Conread position: 178-477
Cow position:
Alignm length: 302
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 102

Conread position: 178-477
Cow position:
Alignm length: 303
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 12

Conread position: 178-488
Cow position:
Alignm length: 313
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 91

Conread position: 178-488
Cow position:
Alignm length: 312
Alignm identity: 221
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 68, 95

Conread position: 178-488
Cow position:
Alignm length: 313
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 104

Conread position: 178-488
Cow position:
Alignm length: 316
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 96

Conread position: 178-490
Cow position:
Alignm length: 315
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 104

Conread position: 178-490
Cow position:
Alignm length: 316
Alignm identity: 220
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 69, 27

Conread position: 179-461
Cow position:
Alignm length: 285
Alignm identity: 198
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 6, 14

Conread position: 179-491
Cow position:
Alignm length: 315
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 95

Conread position: 180-487
Cow position:
Alignm length: 312
Alignm identity: 209
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 86, 62

Conread position: 188-457
Cow position:
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 18

Conread position: 191-480
Cow position:
Alignm length: 291
Alignm identity: 192
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 10

Conread position: 196-488
Cow position:
Alignm length: 295
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 78

Conread position: 209-477
Cow position:
Alignm length: 271
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 73

Conread position: 219-480
Cow position:
Alignm length: 264
Alignm identity: 192
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 53, 34

Show alignments to all cow chromosomes.