Cow genome map
| Conread name: | rpigcf0_004127.y1 | 
| Conread position: | 1-161 | 
| Cow position: | chr3:53518746-53518907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-166 | 
| Cow position: | chr3:12664843-12665009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-166 | 
| Cow position: | chr3:36614319-36614153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-173 | 
| Cow position: | chr3:32326510-32326343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 98, 60 | 
| Conread position: | 1-179 | 
| Cow position: | chr3:62882270-62882449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 98, 62 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:29578725-29578545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:32412779-32412599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:50941483-50941663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:60142929-60143105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-180 | 
| Cow position: | chr3:77272886-77272706 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 95, 59 | 
| Conread position: | 1-205 | 
| Cow position: | chr3:41207687-41207476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-235 | 
| Cow position: | chr3:42747812-42747571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-238 | 
| Cow position: | chr3:77706736-77706979 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 98, 62 | 
| Conread position: | 1-266 | 
| Cow position: | chr3:48845916-48846189 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-271 | 
| Cow position: | chr3:28094046-28094326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 23, 60 | 
| Conread position: | 1-276 | 
| Cow position: | chr3:54568938-54569221 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 99, 62 | 
| Conread position: | 1-320 | 
| Cow position: | chr3:14054183-14054507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 38, 42 | 
| Conread position: | 1-322 | 
| Cow position: | chr3:54777844-54778171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 93, 39 | 
| Conread position: | 1-322 | 
| Cow position: | chr3:66623123-66623448 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-326 | 
| Cow position: | chr3:32620131-32619805 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-328 | 
| Cow position: | chr3:12987106-12986769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-341 | 
| Cow position: | chr3:13115526-13115187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 52 | 
| Conread position: | 1-347 | 
| Cow position: | chr3:19798242-19797890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 59 | 
| Conread position: | 1-357 | 
| Cow position: | chr3:6713917-6714280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-367 | 
| Cow position: | chr3:57554687-57555052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-373 | 
| Cow position: | chr3:58034727-58034356 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-375 | 
| Cow position: | chr3:34027965-34027585 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-385 | 
| Cow position: | chr3:55108679-55108304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 98, 58 | 
| Conread position: | 1-387 | 
| Cow position: | chr3:6854708-6854325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 53 | 
| Conread position: | 1-389 | 
| Cow position: | chr3:22338818-22339210 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-389 | 
| Cow position: | chr3:37280305-37280699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-401 | 
| Cow position: | chr3:39555677-39555271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 61 | 
| Conread position: | 1-401 | 
| Cow position: | chr3:39856373-39856779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 59 | 
| Conread position: | 1-407 | 
| Cow position: | chr3:1033772-1034184 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-423 | 
| Cow position: | chr3:43084152-43084577 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-451 | 
| Cow position: | chr3:22724861-22724405 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 53 | 
| Conread position: | 1-452 | 
| Cow position: | chr3:68510426-68509972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 59 | 
| Conread position: | 1-457 | 
| Cow position: | chr3:31418444-31418906 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 26 | 
| Conread position: | 1-457 | 
| Cow position: | chr3:54087461-54087004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-457 | 
| Cow position: | chr3:74848255-74847809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 59 | 
| Conread position: | 1-458 | 
| Cow position: | chr3:66736655-66736201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-466 | 
| Cow position: | chr3:1739963-1739492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 477 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-467 | 
| Cow position: | chr3:35342560-35343032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-468 | 
| Cow position: | chr3:2790661-2791131 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 62 | 
| Conread position: | 1-468 | 
| Cow position: | chr3:38496701-38497176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 51 | 
| Conread position: | 1-468 | 
| Cow position: | chr3:53047884-53047409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 51 | 
| Conread position: | 1-468 | 
| Cow position: | chr3:68697055-68696583 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-469 | 
| Cow position: | chr3:18886375-18886841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 47 | 
| Conread position: | 1-470 | 
| Cow position: | chr3:24573251-24572786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 59 | 
| Conread position: | 1-476 | 
| Cow position: | chr3:32490803-32490322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:2572437-2572919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:2707959-2707483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:2834629-2834147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:5951706-5951232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 53 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:6864577-6865050 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 26 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:7477011-7476528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 60 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:10243571-10244051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 65 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:15663527-15663057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 26 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:23010282-23010747 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:24443184-24442711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 52 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:29574216-29573736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:30938410-30938890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 26 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:38095809-38096292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:45185073-45184596 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:46858373-46857892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:49134627-49134145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:56148203-56148687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 11 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:56297294-56297776 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:57481827-57481354 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:58953068-58953521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 90, 34 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:66830029-66829557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 53 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:78024520-78024048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:81100990-81101470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 26 | 
| Conread position: | 1-477 | 
| Cow position: | chr3:83290032-83289556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 62 | 
| Conread position: | 1-478 | 
| Cow position: | chr3:3552234-3552709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 59 | 
| Conread position: | 1-478 | 
| Cow position: | chr3:27245778-27245301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 53 | 
| Conread position: | 1-480 | 
| Cow position: | chr3:60178190-60177709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 62 | 
| Conread position: | 1-484 | 
| Cow position: | chr3:33269148-33269622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-485 | 
| Cow position: | chr3:3984022-3984508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 39 | 
| Conread position: | 1-485 | 
| Cow position: | chr3:64171139-64171639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 15 | 
| Conread position: | 1-486 | 
| Cow position: | chr3:42993960-42993471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 180, 59 | 
| Conread position: | 1-487 | 
| Cow position: | chr3:944605-945096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-487 | 
| Cow position: | chr3:27783390-27782929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 39 | 
| Conread position: | 1-487 | 
| Cow position: | chr3:58207935-58207454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 93, 59 | 
| Conread position: | 1-487 | 
| Cow position: | chr3:63736299-63736793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-487 | 
| Cow position: | chr3:72603124-72603617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 87, 59 | 
| Conread position: | 1-487 | 
| Cow position: | chr3:77447904-77448383 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 26 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:823181-822688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:2866745-2866253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:5474448-5474941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 60 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:6528902-6529394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:6837939-6838431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:7155897-7155405 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:7246194-7245704 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:11384226-11384715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 60 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:11417456-11417948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:12798141-12797660 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:13723803-13723310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:14679997-14680489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:15416376-15416868 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:16225787-16226276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:16294000-16293514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 60 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:18759512-18759003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 380 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 61 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:18862351-18862842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 52 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:19880959-19881451 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:19883380-19883860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 11 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:19941801-19942285 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:20379807-20379317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:21026490-21026008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 110, 42 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:21593194-21593684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:26533086-26532603 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 26 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:26742963-26742471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:26993036-26993527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:28435789-28435297 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:30616027-30615539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:31021592-31022083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:34504213-34503733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:37627805-37628287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 37 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:37893743-37894233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:38251763-38252236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:38869483-38869968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:40048799-40049290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 58 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:40337233-40336744 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:40521030-40520538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:43525829-43525338 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:44926724-44927215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:45977412-45977901 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:49563921-49564418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 65 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:49605529-49605041 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:49611298-49610809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:49908113-49907631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:49999048-49999537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 11 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:52150376-52149884 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:52689666-52690142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 61 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:53880357-53879865 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:56102658-56103142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:56485350-56484853 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:63202156-63202640 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 40 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:64376799-64376313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:65473340-65473828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:66968969-66968478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 61 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:68717800-68717309 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:68870840-68870348 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:68889662-68889171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 62 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:72175393-72174904 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 52 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:73636791-73637281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:74060382-74060870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:74402838-74403322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 85 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:76864341-76864833 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:78519957-78520449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr3:83767163-83767648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-489 | 
| Cow position: | chr3:64317650-64318141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:3837675-3837201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:13276372-13275872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:17938092-17937612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:19108474-19108962 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:19753817-19753329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:21179349-21178851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:23170283-23169821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 52 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:23204763-23204271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 53 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:25689565-25690051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:32220634-32221114 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:34087285-34086798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 51 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:36875157-36874655 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 53 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:42846263-42846749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 53 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:43190360-43189867 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:46014772-46014280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 56 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:47272970-47272473 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:48361851-48362333 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 11 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:48603161-48603667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:54787996-54788492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 137, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:55374000-55374480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 9 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:56645421-56644925 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:56719415-56718926 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 60 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:58950371-58950864 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:61173404-61173897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 62 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:64653579-64654074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:65988833-65989315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:69930924-69930431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:70914354-70913865 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 375 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:72632982-72633478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 364 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 60 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:75038932-75038436 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 55 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:76001045-76000553 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 42 | 
| Conread position: | 1-490 | 
| Cow position: | chr3:77426609-77427079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 48 | 
| Conread position: | 1-491 | 
| Cow position: | chr3:2904527-2904052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 46 | 
| Conread position: | 1-491 | 
| Cow position: | chr3:18814416-18814910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-491 | 
| Cow position: | chr3:24265112-24265603 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 114, 59 | 
| Conread position: | 1-491 | 
| Cow position: | chr3:24586320-24585827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 59 | 
| Conread position: | 1-491 | 
| Cow position: | chr3:45311702-45312185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-491 | 
| Cow position: | chr3:49542291-49541803 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-493 | 
| Cow position: | chr3:40826307-40826805 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 59 | 
| Conread position: | 2-363 | 
| Cow position: | chr3:523030-523367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 201, 58 | 
| Conread position: | 2-477 | 
| Cow position: | chr3:33326293-33326781 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 58 | 
| Conread position: | 2-487 | 
| Cow position: | chr3:64697743-64698201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 58 | 
| Conread position: | 2-488 | 
| Cow position: | chr3:322940-322462 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 90, 63 | 
| Conread position: | 2-488 | 
| Cow position: | chr3:20795204-20795695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 58 | 
| Conread position: | 2-488 | 
| Cow position: | chr3:31934426-31933935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 59 | 
| Conread position: | 2-488 | 
| Cow position: | chr3:57742427-57742913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 58 | 
| Conread position: | 2-490 | 
| Cow position: | chr3:2365986-2365504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 61 | 
| Conread position: | 2-490 | 
| Cow position: | chr3:84198705-84199178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 45 | 
| Conread position: | 3-258 | 
| Cow position: | chr3:31771051-31771306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 96, 38 | 
| Conread position: | 3-296 | 
| Cow position: | chr3:6875362-6875079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 96, 57 | 
| Conread position: | 3-387 | 
| Cow position: | chr3:44100959-44101354 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 57 | 
| Conread position: | 3-473 | 
| Cow position: | chr3:48215561-48215100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 96, 27 | 
| Conread position: | 3-475 | 
| Cow position: | chr3:24638323-24638795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 57 | 
| Conread position: | 3-476 | 
| Cow position: | chr3:48240164-48240642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 24 | 
| Conread position: | 3-477 | 
| Cow position: | chr3:3653374-3652910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 9 | 
| Conread position: | 3-477 | 
| Cow position: | chr3:76187444-76187931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 364 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 57 | 
| Conread position: | 3-480 | 
| Cow position: | chr3:46224807-46225274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 62 | 
| Conread position: | 3-486 | 
| Cow position: | chr3:12253960-12254441 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 57 | 
| Conread position: | 3-488 | 
| Cow position: | chr3:20475425-20475909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 60 | 
| Conread position: | 3-488 | 
| Cow position: | chr3:49336110-49336595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 57 | 
| Conread position: | 3-488 | 
| Cow position: | chr3:82363701-82364178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 59 | 
| Conread position: | 3-490 | 
| Cow position: | chr3:1482942-1483431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 96, 56 | 
| Conread position: | 3-490 | 
| Cow position: | chr3:24455605-24455132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 56 | 
| Conread position: | 3-490 | 
| Cow position: | chr3:61677450-61677938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 57 | 
| Conread position: | 3-490 | 
| Cow position: | chr3:74850236-74849759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 24 | 
| Conread position: | 4-323 | 
| Cow position: | chr3:56337046-56336721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 9, 60 | 
| Conread position: | 4-427 | 
| Cow position: | chr3:50112114-50111685 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 9, 28 | 
| Conread position: | 4-461 | 
| Cow position: | chr3:39233503-39233965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 93, 49 | 
| Conread position: | 4-488 | 
| Cow position: | chr3:68273753-68274241 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 56 | 
| Conread position: | 4-488 | 
| Cow position: | chr3:77225648-77226124 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 56 | 
| Conread position: | 4-490 | 
| Cow position: | chr3:226965-226485 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 57 | 
| Conread position: | 4-490 | 
| Cow position: | chr3:72669648-72669154 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 8 | 
| Conread position: | 5-265 | 
| Cow position: | chr3:65177924-65178192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-320 | 
| Cow position: | chr3:83700406-83700083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 34, 24 | 
| Conread position: | 5-325 | 
| Cow position: | chr3:32838272-32838596 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 70, 57 | 
| Conread position: | 5-340 | 
| Cow position: | chr3:2921172-2921512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-472 | 
| Cow position: | chr3:13312092-13311615 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-477 | 
| Cow position: | chr3:46505682-46506160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-488 | 
| Cow position: | chr3:13035582-13035094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-488 | 
| Cow position: | chr3:35612068-35612549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-488 | 
| Cow position: | chr3:37971958-37972430 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 173, 55 | 
| Conread position: | 5-488 | 
| Cow position: | chr3:66888282-66887796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-490 | 
| Cow position: | chr3:29130010-29130498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-491 | 
| Cow position: | chr3:15570353-15570835 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 11 | 
| Conread position: | 6-246 | 
| Cow position: | chr3:5497517-5497278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 93, 47 | 
| Conread position: | 6-387 | 
| Cow position: | chr3:40285401-40285017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 54 | 
| Conread position: | 6-477 | 
| Cow position: | chr3:63148723-63148249 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 54 | 
| Conread position: | 7-277 | 
| Cow position: | chr3:48527473-48527754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 25, 57 | 
| Conread position: | 7-477 | 
| Cow position: | chr3:42977668-42977201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 53 | 
| Conread position: | 7-477 | 
| Cow position: | chr3:45692122-45691659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 53 | 
| Conread position: | 7-488 | 
| Cow position: | chr3:40101932-40101456 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 33 | 
| Conread position: | 7-490 | 
| Cow position: | chr3:6688732-6689235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 508 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 52 | 
| Conread position: | 7-490 | 
| Cow position: | chr3:48272695-48273184 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 53 | 
| Conread position: | 8-468 | 
| Cow position: | chr3:34116447-34115981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 52 | 
| Conread position: | 8-488 | 
| Cow position: | chr3:27547531-27547036 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 112 | 
| Conread position: | 10-420 | 
| Cow position: | chr3:72105743-72105344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 73, 50 | 
| Conread position: | 10-488 | 
| Cow position: | chr3:27866575-27867064 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 50 | 
| Conread position: | 10-490 | 
| Cow position: | chr3:50920958-50921443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 51 | 
| Conread position: | 11-470 | 
| Cow position: | chr3:82931550-82932004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 48 | 
| Conread position: | 11-490 | 
| Cow position: | chr3:75165147-75164672 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 49 | 
| Conread position: | 12-257 | 
| Cow position: | chr3:54765929-54766176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 88, 48 | 
| Conread position: | 12-429 | 
| Cow position: | chr3:31121220-31120792 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 42 | 
| Conread position: | 12-491 | 
| Cow position: | chr3:23287414-23286932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 48 | 
| Conread position: | 14-488 | 
| Cow position: | chr3:56696771-56697239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 30 | 
| Conread position: | 15-488 | 
| Cow position: | chr3:302155-302623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 45 | 
| Conread position: | 16-231 | 
| Cow position: | chr3:41056865-41057082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 164, 44 | 
| Conread position: | 16-252 | 
| Cow position: | chr3:38528892-38528652 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 83, 25 | 
| Conread position: | 16-256 | 
| Cow position: | chr3:67545669-67545430 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 163, 44 | 
| Conread position: | 19-490 | 
| Cow position: | chr3:34557441-34556973 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 13 | 
| Conread position: | 20-488 | 
| Cow position: | chr3:41019385-41018909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 40 | 
| Conread position: | 20-491 | 
| Cow position: | chr3:77726389-77726841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 40 | 
| Conread position: | 21-491 | 
| Cow position: | chr3:39327478-39327951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 39 | 
| Conread position: | 31-325 | 
| Cow position: | chr3:37021468-37021171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 8e-39 | 
| Alignm gaps (pig, cow): | 68, 29 | 
| Conread position: | 31-490 | 
| Cow position: | chr3:27454993-27454532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 29 | 
| Conread position: | 32-346 | 
| Cow position: | chr3:11949729-11950031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 150, 31 | 
| Conread position: | 32-420 | 
| Cow position: | chr3:46136133-46135732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 28 | 
| Conread position: | 32-488 | 
| Cow position: | chr3:4039990-4039527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 31 | 
| Conread position: | 33-490 | 
| Cow position: | chr3:7773057-7772630 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 7 | 
| Conread position: | 40-342 | 
| Cow position: | chr3:77466642-77466948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 54, 20 | 
| Conread position: | 40-452 | 
| Cow position: | chr3:30908756-30909183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 20 | 
| Conread position: | 40-488 | 
| Cow position: | chr3:36671672-36671215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 20 | 
| Conread position: | 41-490 | 
| Cow position: | chr3:26566726-26567179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 19 | 
| Conread position: | 42-490 | 
| Cow position: | chr3:31396325-31396773 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 18 | 
| Conread position: | 49-480 | 
| Cow position: | chr3:57977590-57977152 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 50, 13 | 
| Conread position: | 49-488 | 
| Cow position: | chr3:19215874-19216302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 11 | 
| Conread position: | 51-248 | 
| Cow position: | chr3:49454577-49454779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 48, 9 | 
| Conread position: | 51-414 | 
| Cow position: | chr3:63239069-63238707 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 34 | 
| Conread position: | 51-490 | 
| Cow position: | chr3:54654214-54653771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 9 | 
| Conread position: | 53-234 | 
| Cow position: | chr3:24315935-24316123 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-401 | 
| Cow position: | chr3:32412524-32412170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-476 | 
| Cow position: | chr3:65084896-65085324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-477 | 
| Cow position: | chr3:49732833-49732406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-488 | 
| Cow position: | chr3:14212352-14212792 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-488 | 
| Cow position: | chr3:35918526-35918961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-488 | 
| Cow position: | chr3:36121137-36121577 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-488 | 
| Cow position: | chr3:42508247-42507812 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-488 | 
| Cow position: | chr3:47986403-47986841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 7 | 
| Conread position: | 53-488 | 
| Cow position: | chr3:50204527-50204966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-490 | 
| Cow position: | chr3:6442031-6442474 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-493 | 
| Cow position: | chr3:57455920-57456353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 54-465 | 
| Cow position: | chr3:60185220-60184789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 6 | 
| Conread position: | 54-488 | 
| Cow position: | chr3:49930798-49931237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 6 | 
| Conread position: | 55-477 | 
| Cow position: | chr3:35619521-35619944 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 5 | 
| Conread position: | 55-489 | 
| Cow position: | chr3:12676677-12676236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 5 | 
| Conread position: | 55-491 | 
| Cow position: | chr3:23497794-23497352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 11 | 
| Conread position: | 56-472 | 
| Cow position: | chr3:30351240-30351662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 14 | 
| Conread position: | 58-277 | 
| Cow position: | chr3:45237524-45237297 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 41, 63 | 
| Conread position: | 59-490 | 
| Cow position: | chr3:35885156-35884717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 64 | 
| Conread position: | 60-489 | 
| Cow position: | chr3:597083-597511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 40 | 
| Conread position: | 62-293 | 
| Cow position: | chr3:2508358-2508120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 37, 155 | 
| Conread position: | 62-486 | 
| Cow position: | chr3:3031221-3031633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 59 | 
| Conread position: | 62-488 | 
| Cow position: | chr3:2074753-2075182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 58 | 
| Conread position: | 62-490 | 
| Cow position: | chr3:50461304-50461715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 63 | 
| Conread position: | 66-381 | 
| Cow position: | chr3:33692075-33691754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 19 | 
| Conread position: | 66-490 | 
| Cow position: | chr3:31423153-31422716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 224 | 
| Conread position: | 69-490 | 
| Cow position: | chr3:14863861-14864288 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 52 | 
| Conread position: | 70-413 | 
| Cow position: | chr3:4191958-4191609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 9 | 
| Conread position: | 72-477 | 
| Cow position: | chr3:64875753-64876164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 49 | 
| Conread position: | 73-325 | 
| Cow position: | chr3:51255880-51256129 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 26, 115 | 
| Conread position: | 73-496 | 
| Cow position: | chr3:15656329-15655903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 48 | 
| Conread position: | 74-420 | 
| Cow position: | chr3:2432669-2432320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 10 | 
| Conread position: | 79-316 | 
| Cow position: | chr3:53674234-53673990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 20, 42 | 
| Conread position: | 79-334 | 
| Cow position: | chr3:45947829-45947574 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 20, 42 | 
| Conread position: | 79-477 | 
| Cow position: | chr3:33125268-33124863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 42 | 
| Conread position: | 79-488 | 
| Cow position: | chr3:19718272-19717866 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 58 | 
| Conread position: | 79-488 | 
| Cow position: | chr3:63218928-63219332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 147 | 
| Conread position: | 79-491 | 
| Cow position: | chr3:65582208-65581788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 33 | 
| Conread position: | 80-477 | 
| Cow position: | chr3:12673380-12672987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 11 | 
| Conread position: | 81-490 | 
| Cow position: | chr3:12667693-12668105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 40 | 
| Conread position: | 85-423 | 
| Cow position: | chr3:32768783-32769122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 14, 36 | 
| Conread position: | 85-488 | 
| Cow position: | chr3:79668100-79668512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 36 | 
| Conread position: | 85-490 | 
| Cow position: | chr3:73451321-73450908 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 36 | 
| Conread position: | 86-488 | 
| Cow position: | chr3:55245537-55245945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 35 | 
| Conread position: | 89-491 | 
| Cow position: | chr3:49387651-49388053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 24 | 
| Conread position: | 92-444 | 
| Cow position: | chr3:54291265-54291612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 11, 18 | 
| Conread position: | 92-487 | 
| Cow position: | chr3:56160815-56160423 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 18 | 
| Conread position: | 93-488 | 
| Cow position: | chr3:45675775-45675376 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 26 | 
| Conread position: | 98-477 | 
| Cow position: | chr3:11659459-11659846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 80, 158 | 
| Conread position: | 101-490 | 
| Cow position: | chr3:52257504-52257122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 175 | 
| Conread position: | 108-267 | 
| Cow position: | chr3:43263616-43263451 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 69, 16 | 
| Conread position: | 111-490 | 
| Cow position: | chr3:46752870-46753252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 174 | 
| Conread position: | 112-488 | 
| Cow position: | chr3:37487020-37486647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 116 | 
| Conread position: | 113-490 | 
| Cow position: | chr3:16114429-16114812 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 164 | 
| Conread position: | 114-366 | 
| Cow position: | chr3:36571165-36571418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 65, 86 | 
| Conread position: | 114-420 | 
| Cow position: | chr3:69962821-69962511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 42 | 
| Conread position: | 114-474 | 
| Cow position: | chr3:600740-601093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 33, 142 | 
| Conread position: | 114-477 | 
| Cow position: | chr3:37983341-37982974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 34 | 
| Conread position: | 114-488 | 
| Cow position: | chr3:59602825-59603203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 174 | 
| Conread position: | 114-490 | 
| Cow position: | chr3:22352641-22353019 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 166 | 
| Conread position: | 114-490 | 
| Cow position: | chr3:49416824-49416441 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 175 | 
| Conread position: | 115-488 | 
| Cow position: | chr3:33318158-33318523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 52, 77 | 
| Conread position: | 116-457 | 
| Cow position: | chr3:68344299-68343975 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 47, 113 | 
| Conread position: | 119-347 | 
| Cow position: | chr3:32211256-32211025 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 60, 169 | 
| Conread position: | 119-488 | 
| Cow position: | chr3:3885168-3884784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 60, 82 | 
| Conread position: | 123-477 | 
| Cow position: | chr3:16657834-16657483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 32, 78 | 
| Conread position: | 125-486 | 
| Cow position: | chr3:55894992-55895352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 14, 7 | 
| Conread position: | 128-487 | 
| Cow position: | chr3:51490341-51490700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 51, 41 | 
| Conread position: | 129-488 | 
| Cow position: | chr3:26722774-26722410 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 160 | 
| Conread position: | 132-488 | 
| Cow position: | chr3:6785359-6785718 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 156 | 
| Conread position: | 132-488 | 
| Cow position: | chr3:26919772-26920122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 55 | 
| Conread position: | 132-488 | 
| Cow position: | chr3:35109268-35109628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 156 | 
| Conread position: | 132-490 | 
| Cow position: | chr3:5886928-5887289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 157 | 
| Conread position: | 134-468 | 
| Cow position: | chr3:14466818-14466475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 142 | 
| Conread position: | 135-369 | 
| Cow position: | chr3:36402869-36403108 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 33, 77 | 
| Conread position: | 135-468 | 
| Cow position: | chr3:3300687-3301024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 153 | 
| Conread position: | 135-488 | 
| Cow position: | chr3:42186514-42186870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 153 | 
| Conread position: | 135-488 | 
| Cow position: | chr3:75997840-75997486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 149 | 
| Conread position: | 135-493 | 
| Cow position: | chr3:29311195-29311552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 47, 145 | 
| Conread position: | 139-496 | 
| Cow position: | chr3:31748729-31749087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 120 | 
| Conread position: | 148-463 | 
| Cow position: | chr3:30622931-30623252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 34, 141 | 
| Conread position: | 148-490 | 
| Cow position: | chr3:19795034-19794687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 140 | 
| Conread position: | 150-488 | 
| Cow position: | chr3:8605845-8605511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 60 | 
| Conread position: | 153-468 | 
| Cow position: | chr3:64024969-64024648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 127 | 
| Conread position: | 163-488 | 
| Cow position: | chr3:13248942-13248618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 24, 120 | 
| Conread position: | 171-481 | 
| Cow position: | chr3:58129177-58129487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 83 | 
| Conread position: | 172-326 | 
| Cow position: | chr3:26833721-26833568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 74, 101 | 
| Conread position: | 172-452 | 
| Cow position: | chr3:59332669-59332950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 73, 103 | 
| Conread position: | 174-490 | 
| Cow position: | chr3:69208144-69207836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 13, 69 | 
| Conread position: | 175-391 | 
| Cow position: | chr3:51547850-51548065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 78, 107 | 
| Conread position: | 178-327 | 
| Cow position: | chr3:26670947-26670798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 52, 99 | 
| Conread position: | 178-338 | 
| Cow position: | chr3:32325530-32325371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 70, 96 | 
| Conread position: | 178-387 | 
| Cow position: | chr3:57996652-57996860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 71, 104 | 
| Conread position: | 178-442 | 
| Cow position: | chr3:42602750-42603026 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 75, 96 | 
| Conread position: | 178-460 | 
| Cow position: | chr3:13117959-13117687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 55 | 
| Conread position: | 178-477 | 
| Cow position: | chr3:36416833-36417131 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 104 | 
| Conread position: | 178-487 | 
| Cow position: | chr3:39214466-39214778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 96 | 
| Conread position: | 178-488 | 
| Cow position: | chr3:579268-579574 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 71, 104 | 
| Conread position: | 178-488 | 
| Cow position: | chr3:17056971-17056666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 14 | 
| Conread position: | 178-488 | 
| Cow position: | chr3:24275663-24275974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 96 | 
| Conread position: | 178-488 | 
| Cow position: | chr3:34015505-34015813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 178-488 | 
| Cow position: | chr3:34464461-34464766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 96 | 
| Conread position: | 178-488 | 
| Cow position: | chr3:75772041-75771733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 104 | 
| Conread position: | 178-490 | 
| Cow position: | chr3:59864576-59864885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 306, 74 | 
| Conread position: | 178-490 | 
| Cow position: | chr3:73416091-73416405 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 96 | 
| Conread position: | 180-488 | 
| Cow position: | chr3:35043255-35043561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 102 | 
| Conread position: | 181-488 | 
| Cow position: | chr3:2117543-2117847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 101 | 
| Conread position: | 186-488 | 
| Cow position: | chr3:21779676-21779376 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 96 | 
| Conread position: | 186-488 | 
| Cow position: | chr3:53787950-53788250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 96 | 
| Conread position: | 187-469 | 
| Cow position: | chr3:53518905-53519187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 41, 96 | 
| Conread position: | 187-483 | 
| Cow position: | chr3:37451203-37451499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 87 | 
| Conread position: | 188-488 | 
| Cow position: | chr3:8391469-8391758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 86 | 
| Conread position: | 192-480 | 
| Cow position: | chr3:65960996-65961275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 59, 68 | 
| Conread position: | 193-490 | 
| Cow position: | chr3:70322564-70322269 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 56, 79 | 
| Conread position: | 196-488 | 
| Cow position: | chr3:41207454-41207164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 50, 86 | 
| Conread position: | 199-389 | 
| Cow position: | chr3:7481387-7481203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 50, 83 | 
| Conread position: | 202-488 | 
| Cow position: | chr3:26891608-26891892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 80 | 
| Conread position: | 202-489 | 
| Cow position: | chr3:33469540-33469262 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 203-488 | 
| Cow position: | chr3:64655329-64655606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 46, 79 | 
| Conread position: | 204-488 | 
| Cow position: | chr3:69271721-69272003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 78 | 
| Conread position: | 212-488 | 
| Cow position: | chr3:34393159-34392885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 52 | 
| Conread position: | 214-476 | 
| Cow position: | chr3:10371506-10371762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 228, 48 | 
| Conread position: | 215-475 | 
| Cow position: | chr3:4017637-4017891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 38, 55 | 
| Conread position: | 215-488 | 
| Cow position: | chr3:33254728-33254460 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 215-488 | 
| Cow position: | chr3:70215302-70215573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 34, 67 | 
| Conread position: | 216-377 | 
| Cow position: | chr3:2366434-2366274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 33, 66 | 
| Conread position: | 216-488 | 
| Cow position: | chr3:37599868-37600133 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 0 | 
| Conread position: | 236-487 | 
| Cow position: | chr3:22220294-22220541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 243-469 | 
| Cow position: | chr3:60932428-60932649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 245-463 | 
| Cow position: | chr3:74391743-74391533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 35, 0 | 
Show alignments to all cow chromosomes.
