Cow genome map

Conread name: rpigcf0_004127.y1

Conread position: 1-161
Cow position: chr3:53518746-53518907 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 59

Conread position: 1-166
Cow position: chr3:12664843-12665009 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 98, 59

Conread position: 1-166
Cow position: chr3:36614319-36614153 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 59

Conread position: 1-173
Cow position: chr3:32326510-32326343 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 98, 60

Conread position: 1-179
Cow position: chr3:62882270-62882449 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 62

Conread position: 1-180
Cow position: chr3:29578725-29578545 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 98, 59

Conread position: 1-180
Cow position: chr3:32412779-32412599 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 98, 59

Conread position: 1-180
Cow position: chr3:50941483-50941663 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 59

Conread position: 1-180
Cow position: chr3:60142929-60143105 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 59

Conread position: 1-180
Cow position: chr3:77272886-77272706 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 95, 59

Conread position: 1-205
Cow position: chr3:41207687-41207476 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 98, 59

Conread position: 1-235
Cow position: chr3:42747812-42747571 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 98, 59

Conread position: 1-238
Cow position: chr3:77706736-77706979 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 98, 62

Conread position: 1-266
Cow position: chr3:48845916-48846189 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 98, 59

Conread position: 1-271
Cow position: chr3:28094046-28094326 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 23, 60

Conread position: 1-276
Cow position: chr3:54568938-54569221 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 193
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 99, 62

Conread position: 1-320
Cow position: chr3:14054183-14054507 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 38, 42

Conread position: 1-322
Cow position: chr3:54777844-54778171 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 209
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 93, 39

Conread position: 1-322
Cow position: chr3:66623123-66623448 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 98, 59

Conread position: 1-326
Cow position: chr3:32620131-32619805 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 231
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 98, 59

Conread position: 1-328
Cow position: chr3:12987106-12986769 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 198
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 98, 59

Conread position: 1-341
Cow position: chr3:13115526-13115187 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 52

Conread position: 1-347
Cow position: chr3:19798242-19797890 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 59

Conread position: 1-357
Cow position: chr3:6713917-6714280 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-367
Cow position: chr3:57554687-57555052 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 265
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 98, 59

Conread position: 1-373
Cow position: chr3:58034727-58034356 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-375
Cow position: chr3:34027965-34027585 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-385
Cow position: chr3:55108679-55108304 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 252
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 98, 58

Conread position: 1-387
Cow position: chr3:6854708-6854325 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 53

Conread position: 1-389
Cow position: chr3:22338818-22339210 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-389
Cow position: chr3:37280305-37280699 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-401
Cow position: chr3:39555677-39555271 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 61

Conread position: 1-401
Cow position: chr3:39856373-39856779 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 59

Conread position: 1-407
Cow position: chr3:1033772-1034184 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-423
Cow position: chr3:43084152-43084577 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-451
Cow position: chr3:22724861-22724405 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 53

Conread position: 1-452
Cow position: chr3:68510426-68509972 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 59

Conread position: 1-457
Cow position: chr3:31418444-31418906 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 26

Conread position: 1-457
Cow position: chr3:54087461-54087004 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-457
Cow position: chr3:74848255-74847809 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 59

Conread position: 1-458
Cow position: chr3:66736655-66736201 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-466
Cow position: chr3:1739963-1739492 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-467
Cow position: chr3:35342560-35343032 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-468
Cow position: chr3:2790661-2791131 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 62

Conread position: 1-468
Cow position: chr3:38496701-38497176 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 51

Conread position: 1-468
Cow position: chr3:53047884-53047409 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 51

Conread position: 1-468
Cow position: chr3:68697055-68696583 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-469
Cow position: chr3:18886375-18886841 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 47

Conread position: 1-470
Cow position: chr3:24573251-24572786 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 59

Conread position: 1-476
Cow position: chr3:32490803-32490322 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-477
Cow position: chr3:2572437-2572919 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-477
Cow position: chr3:2707959-2707483 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-477
Cow position: chr3:2834629-2834147 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-477
Cow position: chr3:5951706-5951232 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 53

Conread position: 1-477
Cow position: chr3:6864577-6865050 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 26

Conread position: 1-477
Cow position: chr3:7477011-7476528 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 60

Conread position: 1-477
Cow position: chr3:10243571-10244051 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 65

Conread position: 1-477
Cow position: chr3:15663527-15663057 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 26

Conread position: 1-477
Cow position: chr3:23010282-23010747 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-477
Cow position: chr3:24443184-24442711 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 52

Conread position: 1-477
Cow position: chr3:29574216-29573736 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 59

Conread position: 1-477
Cow position: chr3:30938410-30938890 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 26

Conread position: 1-477
Cow position: chr3:38095809-38096292 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 59

Conread position: 1-477
Cow position: chr3:45185073-45184596 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-477
Cow position: chr3:46858373-46857892 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 59

Conread position: 1-477
Cow position: chr3:49134627-49134145 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-477
Cow position: chr3:56148203-56148687 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 11

Conread position: 1-477
Cow position: chr3:56297294-56297776 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-477
Cow position: chr3:57481827-57481354 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 59

Conread position: 1-477
Cow position: chr3:58953068-58953521 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 326
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 90, 34

Conread position: 1-477
Cow position: chr3:66830029-66829557 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 53

Conread position: 1-477
Cow position: chr3:78024520-78024048 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 59

Conread position: 1-477
Cow position: chr3:81100990-81101470 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 26

Conread position: 1-477
Cow position: chr3:83290032-83289556 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 62

Conread position: 1-478
Cow position: chr3:3552234-3552709 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 59

Conread position: 1-478
Cow position: chr3:27245778-27245301 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 53

Conread position: 1-480
Cow position: chr3:60178190-60177709 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 62

Conread position: 1-484
Cow position: chr3:33269148-33269622 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-485
Cow position: chr3:3984022-3984508 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 39

Conread position: 1-485
Cow position: chr3:64171139-64171639 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 15

Conread position: 1-486
Cow position: chr3:42993960-42993471 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 315
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 180, 59

Conread position: 1-487
Cow position: chr3:944605-945096 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-487
Cow position: chr3:27783390-27782929 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 39

Conread position: 1-487
Cow position: chr3:58207935-58207454 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 327
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 93, 59

Conread position: 1-487
Cow position: chr3:63736299-63736793 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-487
Cow position: chr3:72603124-72603617 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 322
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 87, 59

Conread position: 1-487
Cow position: chr3:77447904-77448383 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 26

Conread position: 1-488
Cow position: chr3:823181-822688 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:2866745-2866253 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:5474448-5474941 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 60

Conread position: 1-488
Cow position: chr3:6528902-6529394 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:6837939-6838431 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:7155897-7155405 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:7246194-7245704 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:11384226-11384715 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 60

Conread position: 1-488
Cow position: chr3:11417456-11417948 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:12798141-12797660 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:13723803-13723310 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:14679997-14680489 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:15416376-15416868 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:16225787-16226276 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:16294000-16293514 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 60

Conread position: 1-488
Cow position: chr3:18759512-18759003 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 61

Conread position: 1-488
Cow position: chr3:18862351-18862842 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 52

Conread position: 1-488
Cow position: chr3:19880959-19881451 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:19883380-19883860 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 11

Conread position: 1-488
Cow position: chr3:19941801-19942285 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:20379807-20379317 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 59

Conread position: 1-488
Cow position: chr3:21026490-21026008 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 321
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 110, 42

Conread position: 1-488
Cow position: chr3:21593194-21593684 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:26533086-26532603 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 26

Conread position: 1-488
Cow position: chr3:26742963-26742471 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:26993036-26993527 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:28435789-28435297 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 59

Conread position: 1-488
Cow position: chr3:30616027-30615539 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:31021592-31022083 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 59

Conread position: 1-488
Cow position: chr3:34504213-34503733 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 59

Conread position: 1-488
Cow position: chr3:37627805-37628287 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 37

Conread position: 1-488
Cow position: chr3:37893743-37894233 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 59

Conread position: 1-488
Cow position: chr3:38251763-38252236 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:38869483-38869968 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:40048799-40049290 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 58

Conread position: 1-488
Cow position: chr3:40337233-40336744 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 59

Conread position: 1-488
Cow position: chr3:40521030-40520538 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:43525829-43525338 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:44926724-44927215 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:45977412-45977901 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 59

Conread position: 1-488
Cow position: chr3:49563921-49564418 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 65

Conread position: 1-488
Cow position: chr3:49605529-49605041 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 59

Conread position: 1-488
Cow position: chr3:49611298-49610809 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:49908113-49907631 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:49999048-49999537 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 11

Conread position: 1-488
Cow position: chr3:52150376-52149884 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:52689666-52690142 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 61

Conread position: 1-488
Cow position: chr3:53880357-53879865 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:56102658-56103142 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 59

Conread position: 1-488
Cow position: chr3:56485350-56484853 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:63202156-63202640 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 40

Conread position: 1-488
Cow position: chr3:64376799-64376313 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:65473340-65473828 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:66968969-66968478 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 61

Conread position: 1-488
Cow position: chr3:68717800-68717309 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:68870840-68870348 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:68889662-68889171 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 62

Conread position: 1-488
Cow position: chr3:72175393-72174904 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 52

Conread position: 1-488
Cow position: chr3:73636791-73637281 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:74060382-74060870 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 59

Conread position: 1-488
Cow position: chr3:74402838-74403322 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 85

Conread position: 1-488
Cow position: chr3:76864341-76864833 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:78519957-78520449 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-488
Cow position: chr3:83767163-83767648 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-489
Cow position: chr3:64317650-64318141 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 59

Conread position: 1-490
Cow position: chr3:3837675-3837201 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 59

Conread position: 1-490
Cow position: chr3:13276372-13275872 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position: chr3:17938092-17937612 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 59

Conread position: 1-490
Cow position: chr3:19108474-19108962 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 59

Conread position: 1-490
Cow position: chr3:19753817-19753329 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position: chr3:21179349-21178851 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position: chr3:23170283-23169821 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 52

Conread position: 1-490
Cow position: chr3:23204763-23204271 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 53

Conread position: 1-490
Cow position: chr3:25689565-25690051 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position: chr3:32220634-32221114 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position: chr3:34087285-34086798 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 51

Conread position: 1-490
Cow position: chr3:36875157-36874655 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 53

Conread position: 1-490
Cow position: chr3:42846263-42846749 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 53

Conread position: 1-490
Cow position: chr3:43190360-43189867 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position: chr3:46014772-46014280 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 56

Conread position: 1-490
Cow position: chr3:47272970-47272473 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position: chr3:48361851-48362333 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 11

Conread position: 1-490
Cow position: chr3:48603161-48603667 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 59

Conread position: 1-490
Cow position: chr3:54787996-54788492 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 59

Conread position: 1-490
Cow position: chr3:55374000-55374480 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 9

Conread position: 1-490
Cow position: chr3:56645421-56644925 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 59

Conread position: 1-490
Cow position: chr3:56719415-56718926 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 60

Conread position: 1-490
Cow position: chr3:58950371-58950864 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position: chr3:61173404-61173897 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 62

Conread position: 1-490
Cow position: chr3:64653579-64654074 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position: chr3:65988833-65989315 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position: chr3:69930924-69930431 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position: chr3:70914354-70913865 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-490
Cow position: chr3:72632982-72633478 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 60

Conread position: 1-490
Cow position: chr3:75038932-75038436 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 55

Conread position: 1-490
Cow position: chr3:76001045-76000553 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 42

Conread position: 1-490
Cow position: chr3:77426609-77427079 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 48

Conread position: 1-491
Cow position: chr3:2904527-2904052 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 46

Conread position: 1-491
Cow position: chr3:18814416-18814910 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-491
Cow position: chr3:24265112-24265603 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 59

Conread position: 1-491
Cow position: chr3:24586320-24585827 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 59

Conread position: 1-491
Cow position: chr3:45311702-45312185 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-491
Cow position: chr3:49542291-49541803 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 59

Conread position: 1-493
Cow position: chr3:40826307-40826805 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 59

Conread position: 2-363
Cow position: chr3:523030-523367 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 241
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 201, 58

Conread position: 2-477
Cow position: chr3:33326293-33326781 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 58

Conread position: 2-487
Cow position: chr3:64697743-64698201 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 58

Conread position: 2-488
Cow position: chr3:322940-322462 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 323
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 90, 63

Conread position: 2-488
Cow position: chr3:20795204-20795695 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 58

Conread position: 2-488
Cow position: chr3:31934426-31933935 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 59

Conread position: 2-488
Cow position: chr3:57742427-57742913 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 58

Conread position: 2-490
Cow position: chr3:2365986-2365504 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 61

Conread position: 2-490
Cow position: chr3:84198705-84199178 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 45

Conread position: 3-258
Cow position: chr3:31771051-31771306 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 96, 38

Conread position: 3-296
Cow position: chr3:6875362-6875079 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 96, 57

Conread position: 3-387
Cow position: chr3:44100959-44101354 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 57

Conread position: 3-473
Cow position: chr3:48215561-48215100 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 294
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 96, 27

Conread position: 3-475
Cow position: chr3:24638323-24638795 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 57

Conread position: 3-476
Cow position: chr3:48240164-48240642 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 24

Conread position: 3-477
Cow position: chr3:3653374-3652910 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 9

Conread position: 3-477
Cow position: chr3:76187444-76187931 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 57

Conread position: 3-480
Cow position: chr3:46224807-46225274 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 62

Conread position: 3-486
Cow position: chr3:12253960-12254441 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 57

Conread position: 3-488
Cow position: chr3:20475425-20475909 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 60

Conread position: 3-488
Cow position: chr3:49336110-49336595 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 57

Conread position: 3-488
Cow position: chr3:82363701-82364178 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 59

Conread position: 3-490
Cow position: chr3:1482942-1483431 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 321
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 96, 56

Conread position: 3-490
Cow position: chr3:24455605-24455132 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 56

Conread position: 3-490
Cow position: chr3:61677450-61677938 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 57

Conread position: 3-490
Cow position: chr3:74850236-74849759 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 24

Conread position: 4-323
Cow position: chr3:56337046-56336721 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 222
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 60

Conread position: 4-427
Cow position: chr3:50112114-50111685 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 291
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 9, 28

Conread position: 4-461
Cow position: chr3:39233503-39233965 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 290
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 93, 49

Conread position: 4-488
Cow position: chr3:68273753-68274241 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 56

Conread position: 4-488
Cow position: chr3:77225648-77226124 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 56

Conread position: 4-490
Cow position: chr3:226965-226485 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 57

Conread position: 4-490
Cow position: chr3:72669648-72669154 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 8

Conread position: 5-265
Cow position: chr3:65177924-65178192 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 94, 55

Conread position: 5-320
Cow position: chr3:83700406-83700083 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 34, 24

Conread position: 5-325
Cow position: chr3:32838272-32838596 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 223
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 70, 57

Conread position: 5-340
Cow position: chr3:2921172-2921512 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 55

Conread position: 5-472
Cow position: chr3:13312092-13311615 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 55

Conread position: 5-477
Cow position: chr3:46505682-46506160 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 55

Conread position: 5-488
Cow position: chr3:13035582-13035094 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 55

Conread position: 5-488
Cow position: chr3:35612068-35612549 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 55

Conread position: 5-488
Cow position: chr3:37971958-37972430 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 55

Conread position: 5-488
Cow position: chr3:66888282-66887796 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 55

Conread position: 5-490
Cow position: chr3:29130010-29130498 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 55

Conread position: 5-491
Cow position: chr3:15570353-15570835 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 11

Conread position: 6-246
Cow position: chr3:5497517-5497278 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 93, 47

Conread position: 6-387
Cow position: chr3:40285401-40285017 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 54

Conread position: 6-477
Cow position: chr3:63148723-63148249 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 54

Conread position: 7-277
Cow position: chr3:48527473-48527754 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 194
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 25, 57

Conread position: 7-477
Cow position: chr3:42977668-42977201 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 53

Conread position: 7-477
Cow position: chr3:45692122-45691659 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 53

Conread position: 7-488
Cow position: chr3:40101932-40101456 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 33

Conread position: 7-490
Cow position: chr3:6688732-6689235 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 52

Conread position: 7-490
Cow position: chr3:48272695-48273184 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 53

Conread position: 8-468
Cow position: chr3:34116447-34115981 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 52

Conread position: 8-488
Cow position: chr3:27547531-27547036 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 112

Conread position: 10-420
Cow position: chr3:72105743-72105344 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 275
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 73, 50

Conread position: 10-488
Cow position: chr3:27866575-27867064 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 50

Conread position: 10-490
Cow position: chr3:50920958-50921443 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 51

Conread position: 11-470
Cow position: chr3:82931550-82932004 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 48

Conread position: 11-490
Cow position: chr3:75165147-75164672 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 49

Conread position: 12-257
Cow position: chr3:54765929-54766176 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 88, 48

Conread position: 12-429
Cow position: chr3:31121220-31120792 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 42

Conread position: 12-491
Cow position: chr3:23287414-23286932 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 48

Conread position: 14-488
Cow position: chr3:56696771-56697239 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 30

Conread position: 15-488
Cow position: chr3:302155-302623 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 45

Conread position: 16-231
Cow position: chr3:41056865-41057082 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 164, 44

Conread position: 16-252
Cow position: chr3:38528892-38528652 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 83, 25

Conread position: 16-256
Cow position: chr3:67545669-67545430 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 163, 44

Conread position: 19-490
Cow position: chr3:34557441-34556973 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 13

Conread position: 20-488
Cow position: chr3:41019385-41018909 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 40

Conread position: 20-491
Cow position: chr3:77726389-77726841 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 40

Conread position: 21-491
Cow position: chr3:39327478-39327951 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 39

Conread position: 31-325
Cow position: chr3:37021468-37021171 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 68, 29

Conread position: 31-490
Cow position: chr3:27454993-27454532 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 29

Conread position: 32-346
Cow position: chr3:11949729-11950031 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 150, 31

Conread position: 32-420
Cow position: chr3:46136133-46135732 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 28

Conread position: 32-488
Cow position: chr3:4039990-4039527 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 31

Conread position: 33-490
Cow position: chr3:7773057-7772630 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 7

Conread position: 40-342
Cow position: chr3:77466642-77466948 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 212
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 54, 20

Conread position: 40-452
Cow position: chr3:30908756-30909183 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 20

Conread position: 40-488
Cow position: chr3:36671672-36671215 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 20

Conread position: 41-490
Cow position: chr3:26566726-26567179 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 19

Conread position: 42-490
Cow position: chr3:31396325-31396773 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 18

Conread position: 49-480
Cow position: chr3:57977590-57977152 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 282
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 13

Conread position: 49-488
Cow position: chr3:19215874-19216302 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 11

Conread position: 51-248
Cow position: chr3:49454577-49454779 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 9

Conread position: 51-414
Cow position: chr3:63239069-63238707 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 51-490
Cow position: chr3:54654214-54653771 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 9

Conread position: 53-234
Cow position: chr3:24315935-24316123 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 7

Conread position: 53-401
Cow position: chr3:32412524-32412170 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 53-476
Cow position: chr3:65084896-65085324 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 53-477
Cow position: chr3:49732833-49732406 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 53-488
Cow position: chr3:14212352-14212792 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 53-488
Cow position: chr3:35918526-35918961 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 53-488
Cow position: chr3:36121137-36121577 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 53-488
Cow position: chr3:42508247-42507812 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 53-488
Cow position: chr3:47986403-47986841 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 7

Conread position: 53-488
Cow position: chr3:50204527-50204966 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 53-490
Cow position: chr3:6442031-6442474 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 53-493
Cow position: chr3:57455920-57456353 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 54-465
Cow position: chr3:60185220-60184789 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 6

Conread position: 54-488
Cow position: chr3:49930798-49931237 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 6

Conread position: 55-477
Cow position: chr3:35619521-35619944 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 5

Conread position: 55-489
Cow position: chr3:12676677-12676236 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 5

Conread position: 55-491
Cow position: chr3:23497794-23497352 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 11

Conread position: 56-472
Cow position: chr3:30351240-30351662 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 14

Conread position: 58-277
Cow position: chr3:45237524-45237297 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 41, 63

Conread position: 59-490
Cow position: chr3:35885156-35884717 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 64

Conread position: 60-489
Cow position: chr3:597083-597511 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 40

Conread position: 62-293
Cow position: chr3:2508358-2508120 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 37, 155

Conread position: 62-486
Cow position: chr3:3031221-3031633 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 59

Conread position: 62-488
Cow position: chr3:2074753-2075182 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 58

Conread position: 62-490
Cow position: chr3:50461304-50461715 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 63

Conread position: 66-381
Cow position: chr3:33692075-33691754 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 19

Conread position: 66-490
Cow position: chr3:31423153-31422716 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 224

Conread position: 69-490
Cow position: chr3:14863861-14864288 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 52

Conread position: 70-413
Cow position: chr3:4191958-4191609 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 9

Conread position: 72-477
Cow position: chr3:64875753-64876164 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 49

Conread position: 73-325
Cow position: chr3:51255880-51256129 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 115

Conread position: 73-496
Cow position: chr3:15656329-15655903 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 48

Conread position: 74-420
Cow position: chr3:2432669-2432320 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 10

Conread position: 79-316
Cow position: chr3:53674234-53673990 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 20, 42

Conread position: 79-334
Cow position: chr3:45947829-45947574 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 190
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 20, 42

Conread position: 79-477
Cow position: chr3:33125268-33124863 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 42

Conread position: 79-488
Cow position: chr3:19718272-19717866 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 58

Conread position: 79-488
Cow position: chr3:63218928-63219332 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 147

Conread position: 79-491
Cow position: chr3:65582208-65581788 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 33

Conread position: 80-477
Cow position: chr3:12673380-12672987 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 11

Conread position: 81-490
Cow position: chr3:12667693-12668105 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 40

Conread position: 85-423
Cow position: chr3:32768783-32769122 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 14, 36

Conread position: 85-488
Cow position: chr3:79668100-79668512 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 36

Conread position: 85-490
Cow position: chr3:73451321-73450908 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 36

Conread position: 86-488
Cow position: chr3:55245537-55245945 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 35

Conread position: 89-491
Cow position: chr3:49387651-49388053 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 24

Conread position: 92-444
Cow position: chr3:54291265-54291612 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 229
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 18

Conread position: 92-487
Cow position: chr3:56160815-56160423 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 18

Conread position: 93-488
Cow position: chr3:45675775-45675376 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 26

Conread position: 98-477
Cow position: chr3:11659459-11659846 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 245
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 80, 158

Conread position: 101-490
Cow position: chr3:52257504-52257122 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 175

Conread position: 108-267
Cow position: chr3:43263616-43263451 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 69, 16

Conread position: 111-490
Cow position: chr3:46752870-46753252 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 174

Conread position: 112-488
Cow position: chr3:37487020-37486647 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 116

Conread position: 113-490
Cow position: chr3:16114429-16114812 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 164

Conread position: 114-366
Cow position: chr3:36571165-36571418 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 65, 86

Conread position: 114-420
Cow position: chr3:69962821-69962511 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 42

Conread position: 114-474
Cow position: chr3:600740-601093 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 245
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 33, 142

Conread position: 114-477
Cow position: chr3:37983341-37982974 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 34

Conread position: 114-488
Cow position: chr3:59602825-59603203 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 174

Conread position: 114-490
Cow position: chr3:22352641-22353019 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 166

Conread position: 114-490
Cow position: chr3:49416824-49416441 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 175

Conread position: 115-488
Cow position: chr3:33318158-33318523 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 263
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 52, 77

Conread position: 116-457
Cow position: chr3:68344299-68343975 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 242
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 47, 113

Conread position: 119-347
Cow position: chr3:32211256-32211025 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 60, 169

Conread position: 119-488
Cow position: chr3:3885168-3884784 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 273
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 82

Conread position: 123-477
Cow position: chr3:16657834-16657483 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 249
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 32, 78

Conread position: 125-486
Cow position: chr3:55894992-55895352 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 249
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 7

Conread position: 128-487
Cow position: chr3:51490341-51490700 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 241
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 51, 41

Conread position: 129-488
Cow position: chr3:26722774-26722410 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 160

Conread position: 132-488
Cow position: chr3:6785359-6785718 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 156

Conread position: 132-488
Cow position: chr3:26919772-26920122 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 55

Conread position: 132-488
Cow position: chr3:35109268-35109628 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 156

Conread position: 132-490
Cow position: chr3:5886928-5887289 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 157

Conread position: 134-468
Cow position: chr3:14466818-14466475 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 142

Conread position: 135-369
Cow position: chr3:36402869-36403108 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 33, 77

Conread position: 135-468
Cow position: chr3:3300687-3301024 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 153

Conread position: 135-488
Cow position: chr3:42186514-42186870 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 153

Conread position: 135-488
Cow position: chr3:75997840-75997486 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 149

Conread position: 135-493
Cow position: chr3:29311195-29311552 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 243
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 47, 145

Conread position: 139-496
Cow position: chr3:31748729-31749087 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 120

Conread position: 148-463
Cow position: chr3:30622931-30623252 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 34, 141

Conread position: 148-490
Cow position: chr3:19795034-19794687 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 140

Conread position: 150-488
Cow position: chr3:8605845-8605511 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 60

Conread position: 153-468
Cow position: chr3:64024969-64024648 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 127

Conread position: 163-488
Cow position: chr3:13248942-13248618 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 230
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 24, 120

Conread position: 171-481
Cow position: chr3:58129177-58129487 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 83

Conread position: 172-326
Cow position: chr3:26833721-26833568 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 74, 101

Conread position: 172-452
Cow position: chr3:59332669-59332950 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 73, 103

Conread position: 174-490
Cow position: chr3:69208144-69207836 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 219
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 13, 69

Conread position: 175-391
Cow position: chr3:51547850-51548065 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 78, 107

Conread position: 178-327
Cow position: chr3:26670947-26670798 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 99

Conread position: 178-338
Cow position: chr3:32325530-32325371 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 96

Conread position: 178-387
Cow position: chr3:57996652-57996860 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 71, 104

Conread position: 178-442
Cow position: chr3:42602750-42603026 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 75, 96

Conread position: 178-460
Cow position: chr3:13117959-13117687 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 55

Conread position: 178-477
Cow position: chr3:36416833-36417131 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 104

Conread position: 178-487
Cow position: chr3:39214466-39214778 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 96

Conread position: 178-488
Cow position: chr3:579268-579574 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 220
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 71, 104

Conread position: 178-488
Cow position: chr3:17056971-17056666 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 14

Conread position: 178-488
Cow position: chr3:24275663-24275974 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 96

Conread position: 178-488
Cow position: chr3:34015505-34015813 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 178-488
Cow position: chr3:34464461-34464766 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 96

Conread position: 178-488
Cow position: chr3:75772041-75771733 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 104

Conread position: 178-490
Cow position: chr3:59864576-59864885 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 74

Conread position: 178-490
Cow position: chr3:73416091-73416405 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 96

Conread position: 180-488
Cow position: chr3:35043255-35043561 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 102

Conread position: 181-488
Cow position: chr3:2117543-2117847 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 101

Conread position: 186-488
Cow position: chr3:21779676-21779376 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 96

Conread position: 186-488
Cow position: chr3:53787950-53788250 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 96

Conread position: 187-469
Cow position: chr3:53518905-53519187 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 41, 96

Conread position: 187-483
Cow position: chr3:37451203-37451499 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 87

Conread position: 188-488
Cow position: chr3:8391469-8391758 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 86

Conread position: 192-480
Cow position: chr3:65960996-65961275 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 187
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 59, 68

Conread position: 193-490
Cow position: chr3:70322564-70322269 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 214
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 56, 79

Conread position: 196-488
Cow position: chr3:41207454-41207164 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 50, 86

Conread position: 199-389
Cow position: chr3:7481387-7481203 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 83

Conread position: 202-488
Cow position: chr3:26891608-26891892 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 80

Conread position: 202-489
Cow position: chr3:33469540-33469262 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 0

Conread position: 203-488
Cow position: chr3:64655329-64655606 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 46, 79

Conread position: 204-488
Cow position: chr3:69271721-69272003 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 78

Conread position: 212-488
Cow position: chr3:34393159-34392885 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 52

Conread position: 214-476
Cow position: chr3:10371506-10371762 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 228, 48

Conread position: 215-475
Cow position: chr3:4017637-4017891 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 38, 55

Conread position: 215-488
Cow position: chr3:33254728-33254460 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 215-488
Cow position: chr3:70215302-70215573 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 34, 67

Conread position: 216-377
Cow position: chr3:2366434-2366274 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 66

Conread position: 216-488
Cow position: chr3:37599868-37600133 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 236-487
Cow position: chr3:22220294-22220541 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 243-469
Cow position: chr3:60932428-60932649 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 29, 0

Conread position: 245-463
Cow position: chr3:74391743-74391533 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 35, 0

Show alignments to all cow chromosomes.