Cow genome map
| Conread name: | rpigcf0_004127.y1 | 
| Conread position: | 1-166 | 
| Cow position: | chr6:1262836-1263002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-178 | 
| Cow position: | chr6:22679809-22679987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-180 | 
| Cow position: | chr6:27761656-27761836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-180 | 
| Cow position: | chr6:44510016-44510196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-180 | 
| Cow position: | chr6:45591502-45591682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-180 | 
| Cow position: | chr6:62577228-62577048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 6e-27 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-184 | 
| Cow position: | chr6:6474493-6474309 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 98, 58 | 
| Conread position: | 1-205 | 
| Cow position: | chr6:1818845-1818635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-216 | 
| Cow position: | chr6:17927377-17927599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-231 | 
| Cow position: | chr6:24584421-24584188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 97, 46 | 
| Conread position: | 1-231 | 
| Cow position: | chr6:50721052-50721287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-234 | 
| Cow position: | chr6:25217908-25218140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 6e-28 | 
| Alignm gaps (pig, cow): | 38, 48 | 
| Conread position: | 1-240 | 
| Cow position: | chr6:18520128-18519882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 6e-37 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-241 | 
| Cow position: | chr6:10267138-10266890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 6e-28 | 
| Alignm gaps (pig, cow): | 45, 60 | 
| Conread position: | 1-247 | 
| Cow position: | chr6:21975906-21976158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-250 | 
| Cow position: | chr6:49165648-49165392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-251 | 
| Cow position: | chr6:1888483-1888237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 7e-29 | 
| Alignm gaps (pig, cow): | 98, 40 | 
| Conread position: | 1-265 | 
| Cow position: | chr6:17595331-17595058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-267 | 
| Cow position: | chr6:38932300-38932025 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 8e-40 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-267 | 
| Cow position: | chr6:49826298-49826023 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 8.00001e-41 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-271 | 
| Cow position: | chr6:48618-48339 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 8.00001e-41 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-271 | 
| Cow position: | chr6:40975140-40975417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 38, 53 | 
| Conread position: | 1-271 | 
| Cow position: | chr6:48875377-48875107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 9e-21 | 
| Alignm gaps (pig, cow): | 98, 18 | 
| Conread position: | 1-274 | 
| Cow position: | chr6:43790624-43790340 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 7e-29 | 
| Alignm gaps (pig, cow): | 38, 53 | 
| Conread position: | 1-280 | 
| Cow position: | chr6:39897904-39898192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-280 | 
| Cow position: | chr6:49625787-49626072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 97, 59 | 
| Conread position: | 1-316 | 
| Cow position: | chr6:16699160-16699460 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-325 | 
| Cow position: | chr6:38873707-38873377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-325 | 
| Cow position: | chr6:57181774-57182098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-327 | 
| Cow position: | chr6:67211634-67211308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 59 | 
| Conread position: | 1-331 | 
| Cow position: | chr6:28488614-28488288 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 98, 37 | 
| Conread position: | 1-333 | 
| Cow position: | chr6:46218644-46218985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 6e-38 | 
| Alignm gaps (pig, cow): | 98, 15 | 
| Conread position: | 1-336 | 
| Cow position: | chr6:56377942-56377588 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 97, 59 | 
| Conread position: | 1-338 | 
| Cow position: | chr6:42616052-42616392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 58 | 
| Conread position: | 1-342 | 
| Cow position: | chr6:2543683-2544029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-346 | 
| Cow position: | chr6:43049241-43048890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-347 | 
| Cow position: | chr6:18970477-18970136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 46 | 
| Conread position: | 1-348 | 
| Cow position: | chr6:45724191-45723840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-353 | 
| Cow position: | chr6:1105195-1104854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 98, 39 | 
| Conread position: | 1-353 | 
| Cow position: | chr6:41408359-41408716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-358 | 
| Cow position: | chr6:2452802-2453163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 60 | 
| Conread position: | 1-370 | 
| Cow position: | chr6:34129411-34129787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-380 | 
| Cow position: | chr6:33490100-33489716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-387 | 
| Cow position: | chr6:12628856-12629242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 58 | 
| Conread position: | 1-395 | 
| Cow position: | chr6:1507556-1507156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-405 | 
| Cow position: | chr6:52899904-52900310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 59 | 
| Conread position: | 1-407 | 
| Cow position: | chr6:27151487-27151075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-419 | 
| Cow position: | chr6:68030133-68030557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-423 | 
| Cow position: | chr6:30269949-30269520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-423 | 
| Cow position: | chr6:51867949-51868369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-423 | 
| Cow position: | chr6:58605485-58605908 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 44 | 
| Conread position: | 1-427 | 
| Cow position: | chr6:10570942-10570503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-443 | 
| Cow position: | chr6:53935678-53935237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 59 | 
| Conread position: | 1-451 | 
| Cow position: | chr6:41192280-41192735 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-457 | 
| Cow position: | chr6:12514462-12514905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 250, 59 | 
| Conread position: | 1-457 | 
| Cow position: | chr6:59619028-59619493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 59 | 
| Conread position: | 1-467 | 
| Cow position: | chr6:36230572-36230100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-468 | 
| Cow position: | chr6:33983777-33984232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 61 | 
| Conread position: | 1-468 | 
| Cow position: | chr6:67173509-67173983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-471 | 
| Cow position: | chr6:6595377-6595849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-471 | 
| Cow position: | chr6:34843759-34843283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 58 | 
| Conread position: | 1-472 | 
| Cow position: | chr6:16766886-16766411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-475 | 
| Cow position: | chr6:4680549-4681035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 86, 9 | 
| Conread position: | 1-476 | 
| Cow position: | chr6:7138386-7137907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-476 | 
| Cow position: | chr6:15924636-15924160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:7467696-7467215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:24242245-24242723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 52 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:25790745-25790281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:26772167-26771686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:27527005-27526530 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 16 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:28064945-28065426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:33465914-33466393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 61 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:35873761-35873296 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 53 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:39331577-39331097 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:41231441-41231923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:41556289-41556760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:47848951-47848492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 59 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:51733036-51733517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 62 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:52249548-52249079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 29 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:52978201-52977731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 26 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:55539316-55538835 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 43 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:58072614-58073101 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 62 | 
| Conread position: | 1-477 | 
| Cow position: | chr6:61829183-61829665 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-486 | 
| Cow position: | chr6:3928102-3928579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 59 | 
| Conread position: | 1-486 | 
| Cow position: | chr6:6720925-6721416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 63 | 
| Conread position: | 1-486 | 
| Cow position: | chr6:35417006-35416529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 59 | 
| Conread position: | 1-487 | 
| Cow position: | chr6:3573750-3574232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 59 | 
| Conread position: | 1-487 | 
| Cow position: | chr6:15276285-15275794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 45 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:127178-126689 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:328406-327917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:1498155-1498648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 26 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:2087475-2087970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 62 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:2876077-2875588 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:3152172-3152661 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:6120032-6119548 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 12 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:6556915-6557407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:9234466-9234957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:10044169-10044652 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:11019611-11020104 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:11453914-11453421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:11869980-11869490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:12663361-12662876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:14143987-14144467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 40 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:14928413-14928897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:16050336-16049847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:17386477-17386969 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:19103954-19103462 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:19713280-19712799 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:22044054-22043563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:22737753-22737260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:25375140-25374662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:26325245-26324754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:27172784-27173287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:28001422-28000950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:28185376-28184874 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:30077328-30076829 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 16 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:31913221-31912729 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:31940821-31941313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:33950198-33949714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 10 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:37387532-37388012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:43087638-43087158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:43187059-43187556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:44017874-44017382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:44146993-44146502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:45937252-45937725 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:46947773-46948261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:47024993-47025502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:50120972-50120484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:50637241-50637715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:51149896-51150388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 62 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:51717509-51718004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:53543529-53543037 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:55238650-55239136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:55474261-55474753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 26 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:56452141-56451649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:57521128-57521621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 60 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:59596212-59596692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 173, 54 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:60379117-60379610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:62664729-62665221 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:65819626-65819136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-488 | 
| Cow position: | chr6:67553187-67553678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-489 | 
| Cow position: | chr6:727666-727183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 59 | 
| Conread position: | 1-489 | 
| Cow position: | chr6:11193629-11193134 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 62 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:182586-182103 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:478504-479000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:916997-917508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:1096780-1096283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 143, 58 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:3272526-3272032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 52 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:3893688-3893189 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:5946822-5946325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 364 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 60 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:10611781-10612279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:17049324-17049823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 53 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:17112211-17111716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:20450914-20451409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:20553286-20552793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 60 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:21832705-21832210 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 38 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:24632293-24631802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:28550107-28549587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 529 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 34 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:39999503-39999009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:58030734-58031226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 54 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:60167605-60167113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 57 | 
| Conread position: | 1-490 | 
| Cow position: | chr6:62001385-62000895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 38, 31 | 
| Conread position: | 1-491 | 
| Cow position: | chr6:618370-618861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-491 | 
| Cow position: | chr6:4904030-4903552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 60 | 
| Conread position: | 1-491 | 
| Cow position: | chr6:9738299-9737807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 59 | 
| Conread position: | 1-491 | 
| Cow position: | chr6:27534850-27534340 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 62 | 
| Conread position: | 1-491 | 
| Cow position: | chr6:28171858-28172352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 506 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 126 | 
| Conread position: | 1-491 | 
| Cow position: | chr6:38438560-38439059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-491 | 
| Cow position: | chr6:40278013-40278500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-491 | 
| Cow position: | chr6:40550745-40550251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-491 | 
| Cow position: | chr6:40864078-40863583 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 59 | 
| Conread position: | 1-491 | 
| Cow position: | chr6:41676888-41677378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-491 | 
| Cow position: | chr6:60332297-60332794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 59 | 
| Conread position: | 1-493 | 
| Cow position: | chr6:1536659-1537158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 53 | 
| Conread position: | 1-496 | 
| Cow position: | chr6:29085421-29084929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 26 | 
| Conread position: | 2-179 | 
| Cow position: | chr6:42135944-42136122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 97, 58 | 
| Conread position: | 2-342 | 
| Cow position: | chr6:4388695-4389042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 58 | 
| Conread position: | 2-407 | 
| Cow position: | chr6:41531535-41531959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 8e-40 | 
| Alignm gaps (pig, cow): | 97, 58 | 
| Conread position: | 2-420 | 
| Cow position: | chr6:14851791-14851370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 61 | 
| Conread position: | 2-477 | 
| Cow position: | chr6:26668068-26667589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 51 | 
| Conread position: | 2-488 | 
| Cow position: | chr6:39912280-39912768 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 58 | 
| Conread position: | 2-489 | 
| Cow position: | chr6:35600634-35601126 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 58 | 
| Conread position: | 3-219 | 
| Cow position: | chr6:11829680-11829453 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 95, 56 | 
| Conread position: | 3-235 | 
| Cow position: | chr6:7191605-7191379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 51, 106 | 
| Conread position: | 3-250 | 
| Cow position: | chr6:58952165-58951914 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 87, 57 | 
| Conread position: | 3-321 | 
| Cow position: | chr6:35883527-35883843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 36, 58 | 
| Conread position: | 3-337 | 
| Cow position: | chr6:365844-366186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 91, 59 | 
| Conread position: | 3-376 | 
| Cow position: | chr6:31009852-31009486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 7e-39 | 
| Alignm gaps (pig, cow): | 88, 63 | 
| Conread position: | 3-414 | 
| Cow position: | chr6:11354216-11353800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 51 | 
| Conread position: | 3-434 | 
| Cow position: | chr6:65867742-65868176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 57 | 
| Conread position: | 3-469 | 
| Cow position: | chr6:7105573-7105106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 477 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 58 | 
| Conread position: | 3-471 | 
| Cow position: | chr6:529934-529463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 57 | 
| Conread position: | 3-475 | 
| Cow position: | chr6:31303987-31304454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 89, 11 | 
| Conread position: | 3-482 | 
| Cow position: | chr6:30316987-30316504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 13 | 
| Conread position: | 3-487 | 
| Cow position: | chr6:3886549-3886059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 9 | 
| Conread position: | 3-488 | 
| Cow position: | chr6:10650832-10650348 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 44 | 
| Conread position: | 3-488 | 
| Cow position: | chr6:16703787-16703298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 59 | 
| Conread position: | 3-488 | 
| Cow position: | chr6:34074824-34075319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 57 | 
| Conread position: | 3-490 | 
| Cow position: | chr6:9840173-9839686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 57 | 
| Conread position: | 3-490 | 
| Cow position: | chr6:52245466-52245951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 27 | 
| Conread position: | 3-496 | 
| Cow position: | chr6:10236152-10236648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 59 | 
| Conread position: | 4-477 | 
| Cow position: | chr6:8205144-8205623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 57 | 
| Conread position: | 4-477 | 
| Cow position: | chr6:16592917-16593384 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 57 | 
| Conread position: | 4-490 | 
| Cow position: | chr6:16674656-16675125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 175, 43 | 
| Conread position: | 4-490 | 
| Cow position: | chr6:39957032-39957521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 57 | 
| Conread position: | 5-276 | 
| Cow position: | chr6:2581360-2581639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 94, 42 | 
| Conread position: | 5-345 | 
| Cow position: | chr6:20351131-20350785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-395 | 
| Cow position: | chr6:66188842-66188446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-466 | 
| Cow position: | chr6:43620689-43621156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-469 | 
| Cow position: | chr6:2089241-2089703 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-482 | 
| Cow position: | chr6:25783473-25782975 (view UCSC Genome Browser custom track) | 
| Alignm length: | 503 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 51, 127 | 
| Conread position: | 5-486 | 
| Cow position: | chr6:9734008-9733546 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 94, 36 | 
| Conread position: | 5-488 | 
| Cow position: | chr6:888515-889003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-488 | 
| Cow position: | chr6:1796585-1797071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-488 | 
| Cow position: | chr6:12997379-12997865 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-488 | 
| Cow position: | chr6:16595943-16596411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 5e-36 | 
| Alignm gaps (pig, cow): | 83, 58 | 
| Conread position: | 5-488 | 
| Cow position: | chr6:33809476-33808988 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 55 | 
| Conread position: | 5-496 | 
| Cow position: | chr6:15480535-15481015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 59 | 
| Conread position: | 6-386 | 
| Cow position: | chr6:58016315-58016694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 54 | 
| Conread position: | 6-420 | 
| Cow position: | chr6:27475371-27475784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 48 | 
| Conread position: | 6-423 | 
| Cow position: | chr6:50485814-50485402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 54 | 
| Conread position: | 6-477 | 
| Cow position: | chr6:11289497-11289031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 53 | 
| Conread position: | 6-477 | 
| Cow position: | chr6:60876259-60876732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 54 | 
| Conread position: | 6-477 | 
| Cow position: | chr6:64719277-64719752 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 54 | 
| Conread position: | 6-488 | 
| Cow position: | chr6:2186823-2186336 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 54 | 
| Conread position: | 6-491 | 
| Cow position: | chr6:16624735-16625231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 54 | 
| Conread position: | 7-348 | 
| Cow position: | chr6:65892909-65892566 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 53 | 
| Conread position: | 7-487 | 
| Cow position: | chr6:8634340-8633878 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 40 | 
| Conread position: | 7-488 | 
| Cow position: | chr6:12351792-12352283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 53 | 
| Conread position: | 10-467 | 
| Cow position: | chr6:39847875-39848341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 6, 54 | 
| Conread position: | 10-475 | 
| Cow position: | chr6:6182745-6182292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 50 | 
| Conread position: | 10-487 | 
| Cow position: | chr6:32419912-32420393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 50 | 
| Conread position: | 11-469 | 
| Cow position: | chr6:7112969-7112510 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 96, 52 | 
| Conread position: | 12-348 | 
| Cow position: | chr6:55042158-55041820 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 87, 48 | 
| Conread position: | 12-488 | 
| Cow position: | chr6:67448961-67448480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 48 | 
| Conread position: | 12-490 | 
| Cow position: | chr6:17121353-17121839 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 41 | 
| Conread position: | 12-490 | 
| Cow position: | chr6:34493640-34494125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 42 | 
| Conread position: | 12-490 | 
| Cow position: | chr6:34504556-34504071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 42 | 
| Conread position: | 12-491 | 
| Cow position: | chr6:47040244-47039760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 48 | 
| Conread position: | 12-494 | 
| Cow position: | chr6:16418717-16418230 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 48 | 
| Conread position: | 15-487 | 
| Cow position: | chr6:14950684-14950210 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 45 | 
| Conread position: | 15-488 | 
| Cow position: | chr6:14897152-14897628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 164, 45 | 
| Conread position: | 16-248 | 
| Cow position: | chr6:28476040-28476278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 83, 44 | 
| Conread position: | 16-405 | 
| Cow position: | chr6:25357892-25357503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 44 | 
| Conread position: | 16-488 | 
| Cow position: | chr6:5130484-5130024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 81, 50 | 
| Conread position: | 16-488 | 
| Cow position: | chr6:11722227-11721761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 38 | 
| Conread position: | 17-470 | 
| Cow position: | chr6:43797942-43797469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 43 | 
| Conread position: | 18-466 | 
| Cow position: | chr6:65049688-65049261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 42 | 
| Conread position: | 18-475 | 
| Cow position: | chr6:34030258-34030689 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 161, 42 | 
| Conread position: | 19-397 | 
| Cow position: | chr6:11168477-11168862 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 41 | 
| Conread position: | 21-490 | 
| Cow position: | chr6:50571165-50571641 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 348 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 33 | 
| Conread position: | 22-488 | 
| Cow position: | chr6:63177018-63177489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 38 | 
| Conread position: | 26-477 | 
| Cow position: | chr6:17556693-17556237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 34 | 
| Conread position: | 26-488 | 
| Cow position: | chr6:452284-451817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 34 | 
| Conread position: | 30-490 | 
| Cow position: | chr6:705981-706448 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 30 | 
| Conread position: | 31-267 | 
| Cow position: | chr6:13850722-13850967 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 4e-34 | 
| Alignm gaps (pig, cow): | 68, 29 | 
| Conread position: | 32-477 | 
| Cow position: | chr6:843843-843391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 28 | 
| Conread position: | 33-455 | 
| Cow position: | chr6:64425778-64426201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 27 | 
| Conread position: | 33-488 | 
| Cow position: | chr6:2618577-2618120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 27 | 
| Conread position: | 40-488 | 
| Cow position: | chr6:21711697-21712152 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 20 | 
| Conread position: | 40-491 | 
| Cow position: | chr6:59507232-59507657 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 20 | 
| Conread position: | 49-488 | 
| Cow position: | chr6:50113687-50114120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 7 | 
| Conread position: | 49-490 | 
| Cow position: | chr6:40813367-40813811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 10 | 
| Conread position: | 50-459 | 
| Cow position: | chr6:13405231-13405638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 49, 10 | 
| Conread position: | 50-490 | 
| Cow position: | chr6:36531276-36531724 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 10 | 
| Conread position: | 51-352 | 
| Cow position: | chr6:22930646-22930342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 56, 9 | 
| Conread position: | 51-455 | 
| Cow position: | chr6:49761467-49761877 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 9 | 
| Conread position: | 51-487 | 
| Cow position: | chr6:35825073-35825493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 9 | 
| Conread position: | 51-490 | 
| Cow position: | chr6:12926577-12927022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 9 | 
| Conread position: | 51-490 | 
| Cow position: | chr6:57856770-57857220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 73 | 
| Conread position: | 52-488 | 
| Cow position: | chr6:15962913-15962478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 8, 32 | 
| Conread position: | 53-419 | 
| Cow position: | chr6:43039061-43038693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 7 | 
| Conread position: | 53-488 | 
| Cow position: | chr6:6034791-6034353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-488 | 
| Cow position: | chr6:6569212-6568788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-488 | 
| Cow position: | chr6:21857359-21856929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-488 | 
| Cow position: | chr6:23880050-23879613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 53-488 | 
| Cow position: | chr6:45480082-45479642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 7 | 
| Conread position: | 54-488 | 
| Cow position: | chr6:13308392-13307952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 69 | 
| Conread position: | 54-488 | 
| Cow position: | chr6:23568586-23568147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 6 | 
| Conread position: | 55-488 | 
| Cow position: | chr6:15181174-15181604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 5 | 
| Conread position: | 57-490 | 
| Cow position: | chr6:3485410-3484969 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 64 | 
| Conread position: | 62-266 | 
| Cow position: | chr6:34017995-34017781 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 37, 59 | 
| Conread position: | 63-477 | 
| Cow position: | chr6:15138158-15137737 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 58 | 
| Conread position: | 65-474 | 
| Cow position: | chr6:2367244-2366833 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 217 | 
| Conread position: | 69-490 | 
| Cow position: | chr6:32286574-32286999 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 206 | 
| Conread position: | 70-478 | 
| Cow position: | chr6:224486-224071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 216 | 
| Conread position: | 76-423 | 
| Cow position: | chr6:46633147-46633500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 45 | 
| Conread position: | 79-477 | 
| Cow position: | chr6:18987174-18987562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 20, 42 | 
| Conread position: | 85-489 | 
| Cow position: | chr6:46764365-46763957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 36 | 
| Conread position: | 85-490 | 
| Cow position: | chr6:13591351-13591759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 26 | 
| Conread position: | 93-423 | 
| Cow position: | chr6:34405348-34405684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 26 | 
| Conread position: | 93-477 | 
| Cow position: | chr6:1834042-1834431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 26 | 
| Conread position: | 93-482 | 
| Cow position: | chr6:11639152-11638765 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 26 | 
| Conread position: | 97-488 | 
| Cow position: | chr6:53537126-53537522 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 22 | 
| Conread position: | 98-429 | 
| Cow position: | chr6:25180128-25179797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 10 | 
| Conread position: | 98-431 | 
| Cow position: | chr6:3119490-3119149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 21 | 
| Conread position: | 98-490 | 
| Cow position: | chr6:35704469-35704068 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 176 | 
| Conread position: | 100-489 | 
| Cow position: | chr6:39136556-39136946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 19 | 
| Conread position: | 101-490 | 
| Cow position: | chr6:46284044-46283651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 120 | 
| Conread position: | 108-477 | 
| Cow position: | chr6:65909393-65909759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 56, 11 | 
| Conread position: | 109-460 | 
| Cow position: | chr6:14264191-14263838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 42 | 
| Conread position: | 109-490 | 
| Cow position: | chr6:29484044-29484428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 21 | 
| Conread position: | 111-488 | 
| Cow position: | chr6:11401385-11401766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 177 | 
| Conread position: | 111-490 | 
| Cow position: | chr6:8754383-8754005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 15 | 
| Conread position: | 114-317 | 
| Cow position: | chr6:12090899-12090697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 52, 115 | 
| Conread position: | 114-354 | 
| Cow position: | chr6:43585417-43585179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 9e-21 | 
| Alignm gaps (pig, cow): | 33, 37 | 
| Conread position: | 114-356 | 
| Cow position: | chr6:50113120-50113378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 68, 0 | 
| Conread position: | 114-357 | 
| Cow position: | chr6:18497391-18497639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 65, 166 | 
| Conread position: | 114-423 | 
| Cow position: | chr6:27939102-27939415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 174 | 
| Conread position: | 114-459 | 
| Cow position: | chr6:52557563-52557233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 94 | 
| Conread position: | 114-463 | 
| Cow position: | chr6:49963885-49963526 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 64, 175 | 
| Conread position: | 114-477 | 
| Cow position: | chr6:6944871-6944511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 77 | 
| Conread position: | 114-477 | 
| Cow position: | chr6:13314961-13314594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 93 | 
| Conread position: | 114-482 | 
| Cow position: | chr6:4274137-4274494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 167 | 
| Conread position: | 114-488 | 
| Cow position: | chr6:16644964-16645330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 59, 174 | 
| Conread position: | 114-488 | 
| Cow position: | chr6:18803990-18803613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 173 | 
| Conread position: | 114-488 | 
| Cow position: | chr6:24624070-24623697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 99 | 
| Conread position: | 115-468 | 
| Cow position: | chr6:10598072-10598428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 40 | 
| Conread position: | 115-486 | 
| Cow position: | chr6:38988742-38988379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 66, 133 | 
| Conread position: | 115-490 | 
| Cow position: | chr6:52240761-52240380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 58, 164 | 
| Conread position: | 118-490 | 
| Cow position: | chr6:53810664-53811028 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 9, 13 | 
| Conread position: | 119-370 | 
| Cow position: | chr6:19718658-19718914 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 4.06377e-44 | 
| Alignm gaps (pig, cow): | 60, 169 | 
| Conread position: | 132-488 | 
| Cow position: | chr6:21163389-21163749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 156 | 
| Conread position: | 134-344 | 
| Cow position: | chr6:57228681-57228895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 48, 153 | 
| Conread position: | 134-488 | 
| Cow position: | chr6:62960991-62961343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 8e-30 | 
| Alignm gaps (pig, cow): | 47, 77 | 
| Conread position: | 135-356 | 
| Cow position: | chr6:9587624-9587850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 47, 153 | 
| Conread position: | 135-358 | 
| Cow position: | chr6:28399683-28399456 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 47, 141 | 
| Conread position: | 135-475 | 
| Cow position: | chr6:67098323-67098655 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 117, 130 | 
| Conread position: | 135-488 | 
| Cow position: | chr6:58595317-58594961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 145 | 
| Conread position: | 136-456 | 
| Cow position: | chr6:7176475-7176153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 142 | 
| Conread position: | 136-488 | 
| Cow position: | chr6:16410148-16410501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 99 | 
| Conread position: | 139-476 | 
| Cow position: | chr6:52066028-52065687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 149 | 
| Conread position: | 139-477 | 
| Cow position: | chr6:27094493-27094151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 149 | 
| Conread position: | 152-488 | 
| Cow position: | chr6:48947549-48947212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 84 | 
| Conread position: | 157-466 | 
| Cow position: | chr6:44097823-44098130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 118 | 
| Conread position: | 161-387 | 
| Cow position: | chr6:66839508-66839729 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 23, 92 | 
| Conread position: | 161-488 | 
| Cow position: | chr6:27365291-27365618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 19, 116 | 
| Conread position: | 161-488 | 
| Cow position: | chr6:56925852-56926179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 123 | 
| Conread position: | 171-487 | 
| Cow position: | chr6:9756472-9756166 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 11, 99 | 
| Conread position: | 172-470 | 
| Cow position: | chr6:44510222-44510516 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 287, 100 | 
| Conread position: | 173-488 | 
| Cow position: | chr6:45792866-45793177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 103 | 
| Conread position: | 175-488 | 
| Cow position: | chr6:12388319-12388015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 105 | 
| Conread position: | 178-470 | 
| Cow position: | chr6:16274264-16274558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 38, 30 | 
| Conread position: | 178-477 | 
| Cow position: | chr6:6471795-6471500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 262, 94 | 
| Conread position: | 178-477 | 
| Cow position: | chr6:55903227-55903525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 104 | 
| Conread position: | 178-488 | 
| Cow position: | chr6:508384-508075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 104 | 
| Conread position: | 178-488 | 
| Cow position: | chr6:45975637-45975945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 104 | 
| Conread position: | 178-490 | 
| Cow position: | chr6:21588122-21588434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 103 | 
| Conread position: | 178-490 | 
| Cow position: | chr6:33300803-33301118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 28 | 
| Conread position: | 178-490 | 
| Cow position: | chr6:55386604-55386905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 67, 17 | 
| Conread position: | 178-496 | 
| Cow position: | chr6:33896502-33896188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 96 | 
| Conread position: | 180-420 | 
| Cow position: | chr6:1402417-1402180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 7e-39 | 
| Alignm gaps (pig, cow): | 92, 0 | 
| Conread position: | 180-420 | 
| Cow position: | chr6:1407005-1406768 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 8e-40 | 
| Alignm gaps (pig, cow): | 92, 0 | 
| Conread position: | 180-486 | 
| Cow position: | chr6:10694862-10695165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 94 | 
| Conread position: | 186-488 | 
| Cow position: | chr6:51876911-51877201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 8.00001e-41 | 
| Alignm gaps (pig, cow): | 256, 60 | 
| Conread position: | 191-477 | 
| Cow position: | chr6:2111248-2110964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 91 | 
| Conread position: | 196-490 | 
| Cow position: | chr6:7215951-7216245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 86 | 
| Conread position: | 197-488 | 
| Cow position: | chr6:55361638-55361349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 85 | 
| Conread position: | 199-431 | 
| Cow position: | chr6:53742086-53742310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 199-473 | 
| Cow position: | chr6:45901833-45901560 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 83 | 
| Conread position: | 202-490 | 
| Cow position: | chr6:45618431-45618135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 7e-29 | 
| Alignm gaps (pig, cow): | 48, 81 | 
| Conread position: | 203-488 | 
| Cow position: | chr6:7448658-7448941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 79 | 
| Conread position: | 203-488 | 
| Cow position: | chr6:9322166-9322447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 70 | 
| Conread position: | 208-475 | 
| Cow position: | chr6:26958924-26959196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 8e-30 | 
| Alignm gaps (pig, cow): | 44, 63 | 
| Conread position: | 208-491 | 
| Cow position: | chr6:51673940-51674215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 66 | 
| Conread position: | 209-488 | 
| Cow position: | chr6:18912565-18912289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 40, 73 | 
| Conread position: | 209-488 | 
| Cow position: | chr6:20268143-20267870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 9.00054e-42 | 
| Alignm gaps (pig, cow): | 71, 0 | 
| Conread position: | 209-488 | 
| Cow position: | chr6:28135921-28136197 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 8.00001e-41 | 
| Alignm gaps (pig, cow): | 40, 73 | 
| Conread position: | 215-488 | 
| Cow position: | chr6:3987881-3987610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 38, 67 | 
| Conread position: | 216-488 | 
| Cow position: | chr6:20581600-20581330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 4.06377e-44 | 
| Alignm gaps (pig, cow): | 33, 66 | 
| Conread position: | 216-488 | 
| Cow position: | chr6:48881923-48882189 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 37, 66 | 
| Conread position: | 219-490 | 
| Cow position: | chr6:54358339-54358075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 97 | 
Show alignments to all cow chromosomes.
